Wall clock time and date at job start Tue Mar 31 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 112.84812 * 2 1 4 4 C 1.53782 * 113.61453 * 131.19692 * 2 1 3 5 5 C 1.53781 * 87.07861 * 89.11467 * 4 2 1 6 6 C 1.50706 * 113.61215 * 139.97856 * 5 4 2 7 7 O 1.21288 * 120.00233 * 1.53026 * 6 5 4 8 8 N 1.34776 * 119.99743 * 181.52514 * 6 5 4 9 9 C 1.39994 * 119.99929 * 175.49259 * 8 6 5 10 10 C 1.38919 * 120.00231 * 215.12533 * 9 8 6 11 11 C 1.37999 * 119.99924 * 180.02562 * 10 9 8 12 12 C 1.38910 * 120.00160 * 0.02562 * 11 10 9 13 13 O 1.35779 * 119.99807 * 179.97438 * 12 11 10 14 14 C 1.34808 * 116.99993 * 5.34610 * 13 12 11 15 15 H 1.07993 * 120.00232 * 354.95901 * 14 13 12 16 16 C 1.38638 * 119.99879 * 174.96544 * 14 13 12 17 17 N 1.31574 * 119.99729 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99993 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47488 * 59.99764 * 18 16 14 20 20 H 1.48501 * 109.46725 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47029 * 299.99490 * 18 16 14 22 22 C 1.38916 * 120.00192 * 0.24907 * 12 11 10 23 23 C 1.38004 * 119.99934 * 359.45328 * 22 12 11 24 24 C 1.53781 * 87.17377 * 25.39275 * 5 4 2 25 25 H 1.09005 * 109.46635 * 288.80597 * 1 2 3 26 26 H 1.08997 * 109.46919 * 48.79938 * 1 2 3 27 27 H 1.08991 * 109.47032 * 168.80168 * 1 2 3 28 28 H 1.09003 * 109.46982 * 191.19640 * 3 2 1 29 29 H 1.08999 * 109.47485 * 311.19747 * 3 2 1 30 30 H 1.08994 * 109.47366 * 71.20241 * 3 2 1 31 31 H 1.08990 * 113.61291 * 334.56893 * 4 2 1 32 32 H 1.09001 * 113.61166 * 203.66300 * 4 2 1 33 33 H 1.09001 * 113.61577 * 270.79909 * 5 4 2 34 34 H 0.97000 * 120.00421 * 355.49787 * 8 6 5 35 35 H 1.08000 * 120.00375 * 0.02562 * 10 9 8 36 36 H 1.07998 * 120.00315 * 180.02562 * 11 10 9 37 37 H 0.97000 * 119.99551 * 180.02562 * 17 16 14 38 38 H 1.07999 * 119.99631 * 179.70245 * 22 12 11 39 39 H 1.07994 * 120.00054 * 180.27097 * 23 22 12 40 40 H 1.08999 * 113.61733 * 89.15822 * 24 5 4 41 41 H 1.09001 * 113.61038 * 220.05944 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9281 1.0602 5 6 2.0929 -2.0425 0.0019 6 6 3.3079 -2.9342 0.0027 7 8 4.1940 -2.7511 0.8104 8 7 3.4097 -3.9351 -0.8941 9 6 4.5784 -4.7034 -0.9558 10 6 5.0356 -5.1754 -2.1797 11 6 6.1873 -5.9332 -2.2404 12 6 6.8891 -6.2245 -1.0776 13 8 8.0220 -6.9706 -1.1373 14 6 8.4716 -7.3034 -2.3638 15 1 7.8926 -7.0482 -3.2389 16 6 9.6774 -7.9737 -2.5018 17 7 10.3830 -8.2843 -1.4356 18 14 10.3001 -8.4356 -4.2012 19 1 10.4781 -7.2059 -5.0144 20 1 11.6020 -9.1391 -4.0770 21 1 9.3155 -9.3286 -4.8633 22 6 6.4288 -5.7574 0.1470 23 6 5.2805 -4.9944 0.2071 24 6 2.1448 -0.9317 -1.0603 25 1 -0.3633 0.3313 0.9729 26 1 -0.3633 0.6769 -0.7732 27 1 -0.3633 -1.0080 -0.1996 28 1 3.1942 1.3533 -0.1996 29 1 1.6414 2.0077 -0.7732 30 1 1.9600 1.8734 0.9728 31 1 1.4946 -1.1068 1.9155 32 1 3.1591 -0.6486 1.3495 33 1 1.1573 -2.6019 0.0034 34 1 2.6734 -4.1231 -1.4968 35 1 4.4898 -4.9492 -3.0838 36 1 6.5430 -6.2998 -3.1919 37 1 11.2268 -8.7529 -1.5322 38 1 6.9719 -5.9880 1.0516 39 1 4.9251 -4.6276 1.1586 40 1 3.1575 -0.6532 -1.3518 41 1 1.4923 -1.1134 -1.9143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701489361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:21 Heat of formation + Delta-G solvation = -45.333346 kcal Electronic energy + Delta-G solvation = -22073.633665 eV Core-core repulsion = 18725.823381 eV Total energy + Delta-G solvation = -3347.810284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85421 -40.74148 -39.56790 -37.96934 -35.38678 -34.16364 -31.96058 -31.88083 -29.54486 -28.22753 -27.38599 -26.65756 -25.26203 -23.89958 -22.69598 -21.19668 -19.87953 -19.17181 -18.95683 -18.42000 -17.78334 -16.49079 -16.37748 -16.19015 -15.75431 -15.54991 -15.50901 -15.09946 -14.91383 -14.56489 -14.22065 -13.94417 -13.80729 -13.61827 -13.57404 -13.30421 -13.21483 -12.72091 -12.66570 -12.48089 -12.41497 -12.15761 -12.00669 -11.73185 -11.37323 -11.24303 -11.05518 -10.99833 -10.65866 -10.48833 -9.86259 -8.62550 -8.45707 -6.13557 0.49709 0.53470 1.36377 1.46360 1.53211 1.65764 2.16544 2.20965 2.81660 3.14515 3.45618 3.51267 3.57594 3.70434 3.76868 4.01501 4.11092 4.16205 4.38559 4.48082 4.53659 4.62973 4.72302 4.76738 4.79510 4.89273 4.91809 4.97673 5.06266 5.07773 5.18059 5.20591 5.24951 5.28102 5.30741 5.46096 5.48482 5.55814 5.64010 5.67687 6.01984 6.16349 6.57931 6.98098 7.27316 7.78822 8.77413 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.039131 B = 0.002747 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.372083 B =10188.707350 C =10418.388726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.138 4.138 4 C -0.117 4.117 5 C -0.125 4.125 6 C 0.511 3.489 7 O -0.572 6.572 8 N -0.648 5.648 9 C 0.060 3.940 10 C -0.079 4.079 11 C -0.221 4.221 12 C 0.108 3.892 13 O -0.232 6.232 14 C -0.414 4.414 15 H 0.107 0.893 16 C -0.026 4.026 17 N -0.923 5.923 18 Si 1.021 2.979 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.254 1.254 22 C -0.192 4.192 23 C -0.075 4.075 24 C -0.111 4.111 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.146 0.854 34 H 0.425 0.575 35 H 0.160 0.840 36 H 0.133 0.867 37 H 0.272 0.728 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.067 0.933 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.045 15.326 -3.056 27.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.082 4.082 3 C -0.195 4.195 4 C -0.155 4.155 5 C -0.146 4.146 6 C 0.301 3.699 7 O -0.451 6.451 8 N -0.294 5.294 9 C -0.034 4.034 10 C -0.099 4.099 11 C -0.240 4.240 12 C 0.057 3.943 13 O -0.138 6.138 14 C -0.490 4.490 15 H 0.124 0.876 16 C -0.223 4.223 17 N -0.561 5.561 18 Si 0.840 3.160 19 H -0.181 1.181 20 H -0.199 1.199 21 H -0.178 1.178 22 C -0.212 4.212 23 C -0.095 4.095 24 C -0.148 4.148 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.164 0.836 34 H 0.264 0.736 35 H 0.177 0.823 36 H 0.151 0.849 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.086 0.914 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.133 15.306 -2.255 27.004 hybrid contribution 0.807 -0.649 -0.383 1.104 sum -21.326 14.656 -2.638 26.011 Atomic orbital electron populations 1.21618 0.91163 1.02951 1.02597 1.21811 0.96779 0.94216 0.95345 1.21736 0.99976 0.95478 1.02307 1.22979 1.01335 0.94346 0.96796 1.22854 0.95989 0.94500 1.01268 1.21472 0.89037 0.79924 0.79491 1.90686 1.43110 1.71661 1.39643 1.43247 1.16281 1.31391 1.38528 1.17449 0.92012 1.00713 0.93179 1.20862 0.95063 0.97311 0.96658 1.21143 0.98525 1.06276 0.98088 1.19864 0.87880 0.91463 0.95105 1.83958 1.36279 1.61216 1.32362 1.21844 1.05816 1.38375 0.82992 0.87593 1.26658 0.95011 0.96252 1.04355 1.70204 1.14581 1.39592 1.31744 0.84614 0.77872 0.79174 0.74339 1.18115 1.19899 1.17796 1.20270 1.00264 1.05026 0.95646 1.20845 0.94337 0.95779 0.98568 1.23052 1.01576 0.93446 0.96759 0.91964 0.91354 0.91251 0.93831 0.91341 0.92232 0.90166 0.91488 0.83641 0.73588 0.82289 0.84919 0.91874 0.87172 0.85128 0.91418 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 9.07 71.98 0.65 -0.35 16 2 C -0.08 -1.01 1.39 -51.60 -0.07 -1.08 16 3 C -0.14 -1.79 9.20 71.98 0.66 -1.13 16 4 C -0.12 -2.01 6.55 31.12 0.20 -1.81 16 5 C -0.13 -1.97 3.79 -11.01 -0.04 -2.01 16 6 C 0.51 13.20 7.20 87.66 0.63 13.83 16 7 O -0.57 -20.64 13.35 -3.05 -0.04 -20.68 16 8 N -0.65 -15.57 5.34 -303.37 -1.62 -17.18 16 9 C 0.06 2.04 6.30 38.16 0.24 2.28 16 10 C -0.08 -2.64 9.96 22.38 0.22 -2.42 16 11 C -0.22 -9.47 9.16 22.37 0.20 -9.26 16 12 C 0.11 5.53 6.65 22.59 0.15 5.68 16 13 O -0.23 -14.23 9.75 -22.83 -0.22 -14.46 16 14 C -0.41 -24.19 9.48 67.92 0.64 -23.54 16 15 H 0.11 5.54 5.20 -2.91 -0.02 5.53 16 16 C -0.03 -1.46 5.49 84.83 0.47 -1.00 16 17 N -0.92 -57.52 13.67 21.61 0.30 -57.23 16 18 Si 1.02 42.73 29.55 68.60 2.03 44.76 16 19 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 22 C -0.19 -9.06 9.99 22.38 0.22 -8.83 16 23 C -0.08 -3.05 8.69 22.38 0.19 -2.85 16 24 C -0.11 -1.47 6.76 31.18 0.21 -1.26 16 25 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.42 7.34 -2.39 -0.02 0.40 16 28 H 0.04 0.69 7.96 -2.39 -0.02 0.67 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 32 H 0.07 1.58 7.41 -2.39 -0.02 1.56 16 33 H 0.15 1.36 7.66 -2.39 -0.02 1.34 16 34 H 0.43 6.35 8.82 -92.71 -0.82 5.54 16 35 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.13 5.58 5.63 -2.91 -0.02 5.56 16 37 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 39 H 0.13 5.24 6.23 -2.91 -0.02 5.22 16 40 H 0.07 1.19 7.93 -2.39 -0.02 1.17 16 41 H 0.10 0.85 8.10 -2.39 -0.02 0.83 16 Total: -1.00 -77.62 340.02 5.26 -72.36 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.23 Total: 26.20 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 4.59 Total: -33.76 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.32 Total: -74.41 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.26 Total: -35.14 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -77.62 5.26 -72.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701489361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.022 kcal (2) G-P(sol) polarization free energy of solvation -77.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds