Wall clock time and date at job start Tue Mar 31 2020 05:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 112.85052 * 2 1 4 4 C 1.53782 * 113.61729 * 131.19258 * 2 1 3 5 5 C 1.53791 * 87.07681 * 89.11661 * 4 2 1 6 6 C 1.50704 * 113.61112 * 139.98247 * 5 4 2 7 7 O 1.21285 * 119.99696 * 1.53140 * 6 5 4 8 8 N 1.34776 * 119.99965 * 181.52484 * 6 5 4 9 9 C 1.39919 * 119.99869 * 175.48816 * 8 6 5 10 10 C 1.38967 * 120.03698 * 214.84729 * 9 8 6 11 11 C 1.38149 * 120.06668 * 179.79185 * 10 9 8 12 12 C 1.38170 * 120.13950 * 0.47404 * 11 10 9 13 13 C 1.38908 * 120.06986 * 359.78279 * 12 11 10 14 14 O 1.35747 * 120.03157 * 179.97438 * 13 12 11 15 15 C 1.34833 * 116.99898 * 5.36958 * 14 13 12 16 16 H 1.07994 * 120.00526 * 354.96312 * 15 14 13 17 17 C 1.38657 * 119.99554 * 174.96264 * 15 14 13 18 18 N 1.31554 * 120.00558 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99704 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47254 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47297 * 120.00141 * 19 17 15 22 22 H 1.48503 * 109.47199 * 240.00145 * 19 17 15 23 23 C 1.38709 * 120.03618 * 35.13241 * 9 8 6 24 24 C 1.53775 * 87.17189 * 25.39136 * 5 4 2 25 25 H 1.09004 * 109.47126 * 288.80622 * 1 2 3 26 26 H 1.09002 * 109.47396 * 48.80038 * 1 2 3 27 27 H 1.08997 * 109.47605 * 168.80667 * 1 2 3 28 28 H 1.09000 * 109.47243 * 191.19827 * 3 2 1 29 29 H 1.09007 * 109.46557 * 311.19455 * 3 2 1 30 30 H 1.08999 * 109.46785 * 71.19448 * 3 2 1 31 31 H 1.09001 * 113.61383 * 334.57413 * 4 2 1 32 32 H 1.08998 * 113.61717 * 203.66344 * 4 2 1 33 33 H 1.08999 * 113.61252 * 270.79768 * 5 4 2 34 34 H 0.97002 * 119.99444 * 355.22378 * 8 6 5 35 35 H 1.08005 * 119.96059 * 0.03116 * 10 9 8 36 36 H 1.08003 * 119.93214 * 180.23576 * 11 10 9 37 37 H 1.08000 * 119.96285 * 179.76595 * 12 11 10 38 38 H 0.97000 * 120.00270 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.06983 * 359.95545 * 23 9 8 40 40 H 1.09000 * 113.61332 * 89.15816 * 24 5 4 41 41 H 1.08994 * 113.61243 * 220.05607 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9280 1.0603 5 6 2.0929 -2.0425 0.0019 6 6 3.3079 -2.9341 0.0028 7 8 4.1939 -2.7509 0.8106 8 7 3.4098 -3.9351 -0.8939 9 6 4.5779 -4.7029 -0.9555 10 6 5.0328 -5.1803 -2.1787 11 6 6.1884 -5.9348 -2.2408 12 6 6.8900 -6.2255 -1.0865 13 6 6.4376 -5.7557 0.1399 14 8 7.1272 -6.0422 1.2735 15 6 8.3003 -6.6909 1.1289 16 1 8.6129 -7.0305 0.1525 17 6 9.1054 -6.9221 2.2339 18 7 8.7251 -6.5080 3.4232 19 14 10.7304 -7.8215 2.0337 20 1 10.9257 -8.1789 0.6056 21 1 11.8410 -6.9424 2.4797 22 1 10.7166 -9.0577 2.8564 23 6 5.2798 -4.9934 0.2051 24 6 2.1447 -0.9317 -1.0602 25 1 -0.3633 0.3313 0.9728 26 1 -0.3634 0.6769 -0.7732 27 1 -0.3634 -1.0081 -0.1995 28 1 3.1942 1.3534 -0.1996 29 1 1.6414 2.0076 -0.7734 30 1 1.9599 1.8734 0.9728 31 1 1.4945 -1.1068 1.9157 32 1 3.1591 -0.6485 1.3496 33 1 1.1574 -2.6019 0.0035 34 1 2.6718 -4.1257 -1.4940 35 1 4.4844 -4.9579 -3.0823 36 1 6.5421 -6.3016 -3.1931 37 1 7.7910 -6.8188 -1.1379 38 1 9.2885 -6.6694 4.1961 39 1 4.9263 -4.6268 1.1574 40 1 3.1574 -0.6533 -1.3517 41 1 1.4923 -1.1135 -1.9142 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706149758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:24 Heat of formation + Delta-G solvation = -23.632393 kcal Electronic energy + Delta-G solvation = -22331.776276 eV Core-core repulsion = 18984.907016 eV Total energy + Delta-G solvation = -3346.869260 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77075 -39.23893 -38.14605 -36.37322 -34.01202 -32.21430 -31.23958 -29.42610 -28.40873 -27.67724 -25.90108 -25.33481 -24.36351 -22.02728 -21.20606 -19.90218 -18.47028 -18.14406 -17.44153 -16.78022 -15.67217 -15.45907 -15.02880 -14.76273 -14.64602 -14.27312 -14.17116 -13.79643 -13.52386 -13.35383 -12.98668 -12.86733 -12.70935 -12.44266 -12.08102 -11.79245 -11.71851 -11.58125 -11.31217 -11.10697 -10.99518 -10.98204 -10.74059 -10.49023 -10.41277 -10.30168 -9.69920 -9.57319 -9.09355 -8.78910 -7.66272 -7.15151 -6.39022 -3.98238 2.04642 2.37315 2.90181 3.15841 3.17103 3.22711 3.31980 4.01340 4.19842 4.34221 4.47807 4.52077 4.63501 4.90310 5.08149 5.15554 5.20316 5.37700 5.39244 5.42249 5.52262 5.59934 5.65116 5.65453 5.71053 5.77059 5.86346 5.90373 5.98342 6.12933 6.15512 6.26317 6.32817 6.42350 6.74883 6.93279 7.07306 7.12280 7.37939 7.51430 7.76408 7.83863 8.05960 8.43996 9.05922 9.77699 10.79024 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025345 B = 0.003291 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.483570 B = 8505.501434 C = 9258.981903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.108 4.108 5 C -0.135 4.135 6 C 0.513 3.487 7 O -0.508 6.508 8 N -0.669 5.669 9 C 0.174 3.826 10 C -0.236 4.236 11 C -0.059 4.059 12 C -0.246 4.246 13 C 0.167 3.833 14 O -0.174 6.174 15 C -0.391 4.391 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.188 4.188 24 C -0.114 4.114 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.405 0.595 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.269 0.731 39 H 0.133 0.867 40 H 0.087 0.913 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.324 10.010 -10.143 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.193 4.193 4 C -0.146 4.146 5 C -0.157 4.157 6 C 0.300 3.700 7 O -0.382 6.382 8 N -0.314 5.314 9 C 0.081 3.919 10 C -0.257 4.257 11 C -0.078 4.078 12 C -0.266 4.266 13 C 0.112 3.888 14 O -0.077 6.077 15 C -0.468 4.468 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.209 4.209 24 C -0.152 4.152 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.130 0.870 34 H 0.239 0.761 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.151 0.849 40 H 0.105 0.895 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.657 10.231 -9.049 20.035 hybrid contribution 0.474 -0.690 -0.523 0.987 sum -14.183 9.541 -9.572 19.591 Atomic orbital electron populations 1.21606 0.93060 1.01883 1.01981 1.21825 0.95527 0.94811 0.96942 1.21722 1.00767 0.95076 1.01712 1.22981 1.02672 0.93177 0.95751 1.22731 0.97005 0.95173 1.00760 1.20642 0.88486 0.80294 0.80554 1.90781 1.40638 1.69989 1.36788 1.43437 1.17111 1.32460 1.38393 1.17223 0.87637 0.93741 0.93313 1.20274 1.00957 1.09617 0.94878 1.20499 0.93795 0.96352 0.97165 1.21179 1.04188 1.08851 0.92372 1.19144 0.91336 0.91451 0.86872 1.83992 1.31736 1.65985 1.26036 1.21394 0.94377 1.34821 0.96166 0.88956 1.25306 0.99302 0.97614 0.94377 1.70064 1.37465 1.43261 0.98753 0.85643 0.80234 0.78737 0.78758 1.19097 1.20163 1.20175 1.20176 0.97895 1.04566 0.98270 1.23046 1.01921 0.94221 0.95975 0.92212 0.92377 0.92383 0.92296 0.92686 0.92395 0.90935 0.88400 0.87012 0.76056 0.87447 0.87095 0.85479 0.92095 0.84891 0.89479 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.86 9.07 37.15 0.34 -0.53 16 2 C -0.09 -0.77 1.39 -153.61 -0.21 -0.98 16 3 C -0.14 -1.11 9.20 37.16 0.34 -0.76 16 4 C -0.11 -1.17 6.55 -25.91 -0.17 -1.34 16 5 C -0.14 -1.44 3.79 -90.95 -0.35 -1.78 16 6 C 0.51 8.01 7.20 -10.98 -0.08 7.93 16 7 O -0.51 -10.58 13.35 5.55 0.07 -10.50 16 8 N -0.67 -9.89 5.34 -9.88 -0.05 -9.95 16 9 C 0.17 3.33 6.30 -83.72 -0.53 2.81 16 10 C -0.24 -4.13 9.96 -39.34 -0.39 -4.53 16 11 C -0.06 -1.11 10.03 -39.64 -0.40 -1.50 16 12 C -0.25 -5.54 9.17 -39.36 -0.36 -5.90 16 13 C 0.17 4.29 6.64 -39.14 -0.26 4.03 16 14 O -0.17 -5.26 9.76 0.05 0.00 -5.26 16 15 C -0.39 -11.32 9.49 30.89 0.29 -11.03 16 16 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -26.12 13.67 55.48 0.76 -25.36 16 19 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 C -0.19 -4.44 8.64 -39.21 -0.34 -4.78 16 24 C -0.11 -1.03 6.76 -25.83 -0.17 -1.20 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.36 7.34 -51.93 -0.38 -0.02 16 28 H 0.06 0.53 7.96 -51.93 -0.41 0.12 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.10 1.30 7.41 -51.93 -0.38 0.91 16 33 H 0.11 0.92 7.66 -51.93 -0.40 0.53 16 34 H 0.40 4.25 8.82 -40.82 -0.36 3.89 16 35 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 36 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 37 H 0.13 2.84 5.63 -52.49 -0.30 2.54 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.13 3.39 6.23 -52.49 -0.33 3.06 16 40 H 0.09 0.91 7.93 -51.93 -0.41 0.49 16 41 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -34.31 340.02 -7.26 -41.57 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.76 Total: 6.93 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -2.38 Total: -18.58 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.71 Total: -35.31 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.07 Total: -15.76 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.31 -7.26 -41.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706149758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.940 kcal (2) G-P(sol) polarization free energy of solvation -34.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds