Wall clock time and date at job start Tue Mar 31 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 112.85052 * 2 1 4 4 C 1.53782 * 113.61729 * 131.19258 * 2 1 3 5 5 C 1.53791 * 87.07681 * 89.11661 * 4 2 1 6 6 C 1.50704 * 113.61112 * 139.98247 * 5 4 2 7 7 O 1.21285 * 119.99696 * 1.53140 * 6 5 4 8 8 N 1.34776 * 119.99965 * 181.52484 * 6 5 4 9 9 C 1.39919 * 119.99869 * 175.48816 * 8 6 5 10 10 C 1.38967 * 120.03698 * 214.84729 * 9 8 6 11 11 C 1.38149 * 120.06668 * 179.79185 * 10 9 8 12 12 C 1.38170 * 120.13950 * 0.47404 * 11 10 9 13 13 C 1.38908 * 120.06986 * 359.78279 * 12 11 10 14 14 O 1.35747 * 120.03157 * 179.97438 * 13 12 11 15 15 C 1.34833 * 116.99898 * 5.36958 * 14 13 12 16 16 H 1.07994 * 120.00526 * 354.96312 * 15 14 13 17 17 C 1.38657 * 119.99554 * 174.96264 * 15 14 13 18 18 N 1.31554 * 120.00558 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99704 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47254 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47297 * 120.00141 * 19 17 15 22 22 H 1.48503 * 109.47199 * 240.00145 * 19 17 15 23 23 C 1.38709 * 120.03618 * 35.13241 * 9 8 6 24 24 C 1.53775 * 87.17189 * 25.39136 * 5 4 2 25 25 H 1.09004 * 109.47126 * 288.80622 * 1 2 3 26 26 H 1.09002 * 109.47396 * 48.80038 * 1 2 3 27 27 H 1.08997 * 109.47605 * 168.80667 * 1 2 3 28 28 H 1.09000 * 109.47243 * 191.19827 * 3 2 1 29 29 H 1.09007 * 109.46557 * 311.19455 * 3 2 1 30 30 H 1.08999 * 109.46785 * 71.19448 * 3 2 1 31 31 H 1.09001 * 113.61383 * 334.57413 * 4 2 1 32 32 H 1.08998 * 113.61717 * 203.66344 * 4 2 1 33 33 H 1.08999 * 113.61252 * 270.79768 * 5 4 2 34 34 H 0.97002 * 119.99444 * 355.22378 * 8 6 5 35 35 H 1.08005 * 119.96059 * 0.03116 * 10 9 8 36 36 H 1.08003 * 119.93214 * 180.23576 * 11 10 9 37 37 H 1.08000 * 119.96285 * 179.76595 * 12 11 10 38 38 H 0.97000 * 120.00270 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.06983 * 359.95545 * 23 9 8 40 40 H 1.09000 * 113.61332 * 89.15816 * 24 5 4 41 41 H 1.08994 * 113.61243 * 220.05607 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9280 1.0603 5 6 2.0929 -2.0425 0.0019 6 6 3.3079 -2.9341 0.0028 7 8 4.1939 -2.7509 0.8106 8 7 3.4098 -3.9351 -0.8939 9 6 4.5779 -4.7029 -0.9555 10 6 5.0328 -5.1803 -2.1787 11 6 6.1884 -5.9348 -2.2408 12 6 6.8900 -6.2255 -1.0865 13 6 6.4376 -5.7557 0.1399 14 8 7.1272 -6.0422 1.2735 15 6 8.3003 -6.6909 1.1289 16 1 8.6129 -7.0305 0.1525 17 6 9.1054 -6.9221 2.2339 18 7 8.7251 -6.5080 3.4232 19 14 10.7304 -7.8215 2.0337 20 1 10.9257 -8.1789 0.6056 21 1 11.8410 -6.9424 2.4797 22 1 10.7166 -9.0577 2.8564 23 6 5.2798 -4.9934 0.2051 24 6 2.1447 -0.9317 -1.0602 25 1 -0.3633 0.3313 0.9728 26 1 -0.3634 0.6769 -0.7732 27 1 -0.3634 -1.0081 -0.1995 28 1 3.1942 1.3534 -0.1996 29 1 1.6414 2.0076 -0.7734 30 1 1.9599 1.8734 0.9728 31 1 1.4945 -1.1068 1.9157 32 1 3.1591 -0.6485 1.3496 33 1 1.1574 -2.6019 0.0035 34 1 2.6718 -4.1257 -1.4940 35 1 4.4844 -4.9579 -3.0823 36 1 6.5421 -6.3016 -3.1931 37 1 7.7910 -6.8188 -1.1379 38 1 9.2885 -6.6694 4.1961 39 1 4.9263 -4.6268 1.1574 40 1 3.1574 -0.6533 -1.3517 41 1 1.4923 -1.1135 -1.9142 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706149758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:23 Heat of formation + Delta-G solvation = -46.748480 kcal Electronic energy + Delta-G solvation = -22332.778664 eV Core-core repulsion = 18984.907016 eV Total energy + Delta-G solvation = -3347.871648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93530 -40.74022 -39.57330 -38.05935 -35.53610 -34.27633 -32.13579 -31.09068 -29.98194 -28.23987 -27.38129 -26.70451 -25.56189 -23.58027 -22.87243 -21.19315 -19.98575 -19.17396 -19.14431 -18.15889 -17.22467 -16.77356 -16.57802 -16.21437 -16.02279 -15.66051 -15.46748 -15.32301 -14.91274 -14.51816 -14.28962 -13.92866 -13.83037 -13.65225 -13.60048 -13.21628 -12.98566 -12.74730 -12.70350 -12.45319 -12.38346 -12.09505 -12.05885 -11.77681 -11.41866 -11.27071 -11.19465 -11.02974 -10.78560 -10.59818 -9.36159 -8.88917 -8.48048 -6.18025 0.40958 0.68739 1.33166 1.42369 1.53214 1.60349 2.04309 2.19495 2.81446 3.15635 3.38749 3.44696 3.57354 3.67239 3.76039 4.10943 4.14204 4.34850 4.36514 4.41259 4.50781 4.68960 4.71041 4.73406 4.76423 4.86979 4.89290 4.95061 5.05470 5.06898 5.10991 5.18632 5.22741 5.25993 5.41295 5.45356 5.47277 5.61811 5.62949 5.72810 6.01867 6.19983 6.49767 6.95475 7.21495 7.78368 8.76145 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025345 B = 0.003291 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.483570 B = 8505.501434 C = 9258.981903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 C -0.138 4.138 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.508 3.492 7 O -0.570 6.570 8 N -0.653 5.653 9 C 0.181 3.819 10 C -0.204 4.204 11 C -0.049 4.049 12 C -0.256 4.256 13 C 0.126 3.874 14 O -0.237 6.237 15 C -0.414 4.414 16 H 0.107 0.893 17 C -0.028 4.028 18 N -0.925 5.925 19 Si 1.025 2.975 20 H -0.246 1.246 21 H -0.270 1.270 22 H -0.267 1.267 23 C -0.217 4.217 24 C -0.106 4.106 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.149 0.851 34 H 0.431 0.569 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.123 0.877 38 H 0.272 0.728 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.462 10.097 -14.665 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.079 4.079 3 C -0.195 4.195 4 C -0.161 4.161 5 C -0.146 4.146 6 C 0.297 3.703 7 O -0.447 6.447 8 N -0.300 5.300 9 C 0.087 3.913 10 C -0.224 4.224 11 C -0.067 4.067 12 C -0.276 4.276 13 C 0.075 3.925 14 O -0.144 6.144 15 C -0.490 4.490 16 H 0.124 0.876 17 C -0.225 4.225 18 N -0.563 5.563 19 Si 0.843 3.157 20 H -0.169 1.169 21 H -0.195 1.195 22 H -0.192 1.192 23 C -0.238 4.238 24 C -0.143 4.143 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.167 0.833 34 H 0.271 0.729 35 H 0.183 0.817 36 H 0.178 0.822 37 H 0.141 0.859 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.882 10.331 -13.658 24.047 hybrid contribution 0.882 -0.567 0.683 1.251 sum -16.001 9.764 -12.975 22.797 Atomic orbital electron populations 1.21619 0.90907 1.03085 1.02657 1.21806 0.96930 0.94182 0.94989 1.21740 0.99962 0.95424 1.02361 1.23024 1.01180 0.94854 0.97044 1.22897 0.95633 0.94479 1.01573 1.21687 0.89163 0.80285 0.79137 1.90784 1.43271 1.71499 1.39168 1.43388 1.16562 1.31331 1.38687 1.17405 0.88369 0.93051 0.92519 1.20915 0.99809 1.06004 0.95683 1.21056 0.93199 0.94978 0.97497 1.21331 1.04701 1.09015 0.92545 1.19689 0.92185 0.93202 0.87466 1.83958 1.33136 1.68583 1.28684 1.21964 0.94704 1.35132 0.97194 0.87589 1.26743 1.03674 0.98470 0.93628 1.70233 1.39779 1.46307 1.00026 0.84454 0.74143 0.77245 0.79812 1.16947 1.19488 1.19164 1.20202 0.98790 1.05900 0.98949 1.23040 1.01725 0.92889 0.96670 0.92147 0.90919 0.91177 0.93935 0.90871 0.92427 0.90430 0.91990 0.83341 0.72895 0.81719 0.82168 0.85898 0.91878 0.88391 0.91350 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.07 71.98 0.65 -0.56 16 2 C -0.08 -1.17 1.39 -51.60 -0.07 -1.24 16 3 C -0.14 -2.08 9.20 71.98 0.66 -1.42 16 4 C -0.12 -2.67 6.55 31.12 0.20 -2.47 16 5 C -0.13 -2.41 3.79 -11.01 -0.04 -2.45 16 6 C 0.51 15.74 7.20 87.66 0.63 16.37 16 7 O -0.57 -25.35 13.35 -3.04 -0.04 -25.39 16 8 N -0.65 -17.82 5.34 -303.56 -1.62 -19.43 16 9 C 0.18 6.69 6.30 38.14 0.24 6.93 16 10 C -0.20 -6.16 9.96 22.42 0.22 -5.94 16 11 C -0.05 -1.64 10.03 22.23 0.22 -1.41 16 12 C -0.26 -11.55 9.17 22.41 0.21 -11.35 16 13 C 0.13 6.86 6.64 22.56 0.15 7.01 16 14 O -0.24 -15.53 9.76 -22.74 -0.22 -15.76 16 15 C -0.41 -25.46 9.49 67.92 0.64 -24.81 16 16 H 0.11 5.89 5.20 -2.91 -0.02 5.87 16 17 C -0.03 -1.70 5.49 84.83 0.47 -1.23 16 18 N -0.93 -60.19 13.67 21.61 0.30 -59.90 16 19 Si 1.02 44.64 29.55 68.60 2.03 46.67 16 20 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 C -0.22 -10.84 8.64 22.51 0.19 -10.64 16 24 C -0.11 -1.59 6.76 31.18 0.21 -1.38 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.53 7.34 -2.39 -0.02 0.52 16 28 H 0.04 0.77 7.96 -2.39 -0.02 0.75 16 29 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 32 H 0.06 1.80 7.41 -2.39 -0.02 1.78 16 33 H 0.15 1.83 7.66 -2.39 -0.02 1.81 16 34 H 0.43 7.07 8.82 -92.71 -0.82 6.25 16 35 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 37 H 0.12 5.54 5.63 -2.91 -0.02 5.53 16 38 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 39 H 0.10 5.52 6.23 -2.91 -0.02 5.50 16 40 H 0.07 1.32 7.93 -2.39 -0.02 1.30 16 41 H 0.11 0.96 8.10 -2.39 -0.02 0.94 16 Total: -1.00 -86.68 340.02 5.26 -81.42 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.23 Total: 26.99 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 4.59 Total: -34.60 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -1.32 Total: -79.33 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.26 Total: -41.15 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -86.68 5.26 -81.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706149758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.673 kcal (2) G-P(sol) polarization free energy of solvation -86.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds