Wall clock time and date at job start Tue Mar 31 2020 07:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 115.55331 * 2 1 4 4 C 1.52998 * 117.50087 * 145.67314 * 2 1 3 5 5 C 1.53002 * 60.00091 * 107.49166 * 4 2 1 6 6 H 1.09007 * 117.49697 * 252.50991 * 5 4 2 7 7 C 1.52999 * 117.49752 * 107.49250 * 5 4 2 8 8 N 1.46505 * 109.47188 * 116.37846 * 7 5 4 9 9 C 1.34767 * 120.00111 * 179.97438 * 8 7 5 10 10 O 1.21594 * 120.00104 * 359.97438 * 9 8 7 11 11 C 1.47536 * 120.00123 * 180.02562 * 9 8 7 12 12 C 1.39669 * 120.19638 * 359.71975 * 11 9 8 13 13 C 1.37827 * 119.91822 * 179.75139 * 12 11 9 14 14 C 1.38568 * 120.32564 * 0.52899 * 13 12 11 15 15 C 1.38032 * 120.39919 * 359.74513 * 14 13 12 16 16 C 1.38831 * 120.07319 * 359.97438 * 15 14 13 17 17 O 1.35518 * 120.16031 * 179.97438 * 16 15 14 18 18 C 1.34814 * 116.99947 * 354.40045 * 17 16 15 19 19 H 1.07994 * 120.00324 * 5.06022 * 18 17 16 20 20 C 1.38704 * 119.99893 * 185.06179 * 18 17 16 21 21 N 1.31523 * 119.99543 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00080 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47190 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47248 * 119.99873 * 22 20 18 25 25 H 1.48498 * 109.47227 * 240.00176 * 22 20 18 26 26 H 1.08997 * 109.47169 * 325.71742 * 1 2 3 27 27 H 1.09000 * 109.46995 * 205.71731 * 1 2 3 28 28 H 1.09003 * 109.47197 * 85.71766 * 1 2 3 29 29 H 1.09002 * 109.46381 * 34.42126 * 3 2 1 30 30 H 1.08996 * 109.47449 * 154.41267 * 3 2 1 31 31 H 1.08991 * 109.47360 * 274.42448 * 3 2 1 32 32 H 1.09002 * 117.50087 * 214.97765 * 4 2 1 33 33 H 1.09005 * 117.49834 * 359.97438 * 4 2 1 34 34 H 1.08993 * 109.46941 * 236.37362 * 7 5 4 35 35 H 1.08991 * 109.47296 * 356.38025 * 7 5 4 36 36 H 0.97007 * 119.99499 * 359.97438 * 8 7 5 37 37 H 1.08004 * 120.03716 * 0.02562 * 12 11 9 38 38 H 1.08007 * 119.83873 * 180.25398 * 13 12 11 39 39 H 1.07997 * 119.80232 * 179.76921 * 14 13 12 40 40 H 1.07997 * 119.96118 * 179.97438 * 15 14 13 41 41 H 0.97001 * 119.99670 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 0.7653 5 6 2.2364 -1.1212 -0.7647 6 1 1.6112 -1.8589 -1.2678 7 6 3.5490 -0.7763 -1.4712 8 7 4.0086 -1.9352 -2.2407 9 6 5.1522 -1.8626 -2.9500 10 8 5.8024 -0.8351 -2.9516 11 6 5.6147 -3.0294 -3.7254 12 6 4.8736 -4.2133 -3.7226 13 6 5.3083 -5.2982 -4.4531 14 6 6.4840 -5.2246 -5.1828 15 6 7.2298 -4.0632 -5.1904 16 6 6.8044 -2.9584 -4.4651 17 8 7.5355 -1.8174 -4.4709 18 6 8.7243 -1.8554 -5.1057 19 1 9.0182 -2.7412 -5.6491 20 6 9.5699 -0.7569 -5.0608 21 7 9.2116 0.3220 -4.3993 22 14 11.2172 -0.8098 -5.9396 23 1 11.3814 -2.1274 -6.6047 24 1 11.2697 0.2694 -6.9584 25 1 12.3106 -0.6138 -4.9541 26 1 -0.3633 0.8491 0.5788 27 1 -0.3633 -0.9259 0.4459 28 1 -0.3634 0.0767 -1.0248 29 1 1.5817 2.0737 0.5809 30 1 3.1828 1.3084 0.4438 31 1 2.2751 1.7424 -1.0245 32 1 3.1715 -0.8748 1.2685 33 1 1.6112 -1.8579 1.2692 34 1 3.3890 0.0662 -2.1440 35 1 4.3021 -0.5110 -0.7294 36 1 3.4896 -2.7547 -2.2397 37 1 3.9586 -4.2770 -3.1523 38 1 4.7320 -6.2116 -4.4534 39 1 6.8187 -6.0810 -5.7492 40 1 8.1453 -4.0138 -5.7612 41 1 9.8028 1.0904 -4.3683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732796175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:10 Heat of formation + Delta-G solvation = -17.992371 kcal Electronic energy + Delta-G solvation = -22408.179109 eV Core-core repulsion = 19061.554419 eV Total energy + Delta-G solvation = -3346.624690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.65023 -38.90113 -37.72762 -36.30564 -33.83369 -32.31893 -30.75716 -29.41736 -28.89839 -27.82451 -26.27745 -25.28846 -22.86675 -21.54503 -21.03348 -19.94375 -18.84066 -18.01590 -17.38262 -16.09760 -15.87316 -14.94755 -14.66178 -14.46575 -14.41180 -14.09005 -13.99070 -13.84174 -13.58301 -13.53513 -12.78322 -12.64272 -12.50901 -12.39071 -12.20519 -12.05101 -11.70341 -11.48743 -11.31005 -11.13878 -11.06285 -10.90144 -10.74965 -10.43057 -10.02035 -9.77161 -9.53193 -8.86846 -8.79274 -8.47522 -8.23926 -7.28811 -6.42711 -4.02617 1.74253 2.33779 3.12770 3.13766 3.19430 3.44683 3.78697 3.84416 3.94978 4.53048 4.63487 4.67581 4.74791 4.93789 5.08721 5.19742 5.22595 5.40200 5.48380 5.49572 5.56464 5.66975 5.72670 5.74608 5.79381 5.81465 5.87720 5.98763 6.02003 6.07637 6.14166 6.19016 6.29428 6.58450 6.71318 6.93456 7.02457 7.08330 7.25957 7.31405 7.71466 7.94234 8.18153 8.97039 9.14716 9.69972 10.71253 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.004024 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.682081 B = 6956.370176 C = 8464.976998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.121 4.121 3 C -0.120 4.120 4 C -0.170 4.170 5 C -0.157 4.157 6 H 0.108 0.892 7 C 0.157 3.843 8 N -0.742 5.742 9 C 0.553 3.447 10 O -0.502 6.502 11 C -0.226 4.226 12 C -0.038 4.038 13 C -0.231 4.231 14 C -0.051 4.051 15 C -0.238 4.238 16 C 0.190 3.810 17 O -0.124 6.124 18 C -0.404 4.404 19 H 0.094 0.906 20 C 0.044 3.956 21 N -0.833 5.833 22 Si 0.941 3.059 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.392 0.608 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.643 -4.896 6.386 15.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.122 4.122 3 C -0.177 4.177 4 C -0.207 4.207 5 C -0.176 4.176 6 H 0.126 0.874 7 C 0.033 3.967 8 N -0.398 5.398 9 C 0.342 3.658 10 O -0.376 6.376 11 C -0.231 4.231 12 C -0.057 4.057 13 C -0.250 4.250 14 C -0.070 4.070 15 C -0.258 4.258 16 C 0.130 3.870 17 O -0.023 6.023 18 C -0.480 4.480 19 H 0.112 0.888 20 C -0.163 4.163 21 N -0.464 5.464 22 Si 0.765 3.235 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.226 0.774 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.057 -3.587 6.538 15.036 hybrid contribution 0.524 -0.661 -0.470 0.965 sum -12.533 -4.248 6.068 14.558 Atomic orbital electron populations 1.21353 0.92026 1.01818 1.01917 1.21585 0.94642 0.91619 1.04333 1.21383 1.00190 0.93755 1.02358 1.23361 1.02523 1.00972 0.93801 1.22635 0.98712 1.02077 0.94144 0.87442 1.20688 0.92553 0.88987 0.94450 1.45878 1.26132 1.15948 1.51832 1.18234 0.80124 0.88260 0.79151 1.90947 1.54239 1.30658 1.61804 1.18870 0.99501 0.95621 1.09139 1.20761 0.96906 0.91812 0.96245 1.20459 0.99919 0.98918 1.05728 1.20894 0.93722 0.96395 0.95977 1.21161 1.03718 0.94090 1.06791 1.19277 0.90241 0.86535 0.90952 1.84176 1.28178 1.26866 1.63033 1.21548 0.92405 1.02760 1.31244 0.88831 1.25388 0.99400 0.94564 0.96994 1.70145 1.36302 1.03402 1.36556 0.85660 0.80156 0.78852 0.78812 1.18979 1.20022 1.20026 0.92106 0.92560 0.92165 0.92208 0.92048 0.91792 0.88539 0.88870 0.91509 0.91760 0.77396 0.87064 0.87300 0.87202 0.85081 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.85 37.15 0.37 -0.56 16 2 C -0.12 -1.20 2.70 -154.51 -0.42 -1.62 16 3 C -0.12 -1.22 8.86 37.16 0.33 -0.89 16 4 C -0.17 -1.68 9.47 -26.73 -0.25 -1.94 16 5 C -0.16 -1.74 5.57 -90.62 -0.50 -2.25 16 6 H 0.11 1.07 8.04 -51.93 -0.42 0.65 16 7 C 0.16 2.36 5.04 -4.04 -0.02 2.34 16 8 N -0.74 -12.37 5.51 -61.35 -0.34 -12.71 16 9 C 0.55 12.46 7.76 -12.47 -0.10 12.36 16 10 O -0.50 -14.05 15.17 -16.57 -0.25 -14.30 16 11 C -0.23 -5.01 5.89 -104.81 -0.62 -5.63 16 12 C -0.04 -0.67 9.54 -39.20 -0.37 -1.04 16 13 C -0.23 -3.83 10.02 -39.61 -0.40 -4.23 16 14 C -0.05 -0.92 10.03 -39.54 -0.40 -1.31 16 15 C -0.24 -5.19 9.16 -39.44 -0.36 -5.55 16 16 C 0.19 4.78 6.66 -38.60 -0.26 4.52 16 17 O -0.12 -3.72 7.84 -21.05 -0.16 -3.89 16 18 C -0.40 -11.55 9.49 30.90 0.29 -11.26 16 19 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 20 C 0.04 1.24 5.49 -17.51 -0.10 1.15 16 21 N -0.83 -25.33 13.67 55.48 0.76 -24.57 16 22 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 27 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 30 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 31 H 0.06 0.69 7.84 -51.93 -0.41 0.28 16 32 H 0.10 1.01 7.94 -51.93 -0.41 0.60 16 33 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 34 H 0.07 1.09 7.77 -51.93 -0.40 0.69 16 35 H 0.06 1.05 7.87 -51.93 -0.41 0.64 16 36 H 0.39 5.23 6.43 -40.82 -0.26 4.96 16 37 H 0.11 1.49 6.40 -52.48 -0.34 1.15 16 38 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -34.52 343.98 -8.32 -42.84 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.68 Total: 7.68 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -2.80 Total: -15.90 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.42 Total: -37.28 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.42 Total: -18.19 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.52 -8.32 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732796175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.845 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds