Wall clock time and date at job start Tue Mar 31 2020 07:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 115.55331 * 2 1 4 4 C 1.52998 * 117.50087 * 145.67314 * 2 1 3 5 5 C 1.53002 * 60.00091 * 107.49166 * 4 2 1 6 6 H 1.09007 * 117.49697 * 252.50991 * 5 4 2 7 7 C 1.52999 * 117.49752 * 107.49250 * 5 4 2 8 8 N 1.46505 * 109.47188 * 116.37846 * 7 5 4 9 9 C 1.34767 * 120.00111 * 179.97438 * 8 7 5 10 10 O 1.21594 * 120.00104 * 359.97438 * 9 8 7 11 11 C 1.47536 * 120.00123 * 180.02562 * 9 8 7 12 12 C 1.39669 * 120.19638 * 359.71975 * 11 9 8 13 13 C 1.37827 * 119.91822 * 179.75139 * 12 11 9 14 14 C 1.38568 * 120.32564 * 0.52899 * 13 12 11 15 15 C 1.38032 * 120.39919 * 359.74513 * 14 13 12 16 16 C 1.38831 * 120.07319 * 359.97438 * 15 14 13 17 17 O 1.35518 * 120.16031 * 179.97438 * 16 15 14 18 18 C 1.34814 * 116.99947 * 354.40045 * 17 16 15 19 19 H 1.07994 * 120.00324 * 5.06022 * 18 17 16 20 20 C 1.38704 * 119.99893 * 185.06179 * 18 17 16 21 21 N 1.31523 * 119.99543 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00080 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47190 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47248 * 119.99873 * 22 20 18 25 25 H 1.48498 * 109.47227 * 240.00176 * 22 20 18 26 26 H 1.08997 * 109.47169 * 325.71742 * 1 2 3 27 27 H 1.09000 * 109.46995 * 205.71731 * 1 2 3 28 28 H 1.09003 * 109.47197 * 85.71766 * 1 2 3 29 29 H 1.09002 * 109.46381 * 34.42126 * 3 2 1 30 30 H 1.08996 * 109.47449 * 154.41267 * 3 2 1 31 31 H 1.08991 * 109.47360 * 274.42448 * 3 2 1 32 32 H 1.09002 * 117.50087 * 214.97765 * 4 2 1 33 33 H 1.09005 * 117.49834 * 359.97438 * 4 2 1 34 34 H 1.08993 * 109.46941 * 236.37362 * 7 5 4 35 35 H 1.08991 * 109.47296 * 356.38025 * 7 5 4 36 36 H 0.97007 * 119.99499 * 359.97438 * 8 7 5 37 37 H 1.08004 * 120.03716 * 0.02562 * 12 11 9 38 38 H 1.08007 * 119.83873 * 180.25398 * 13 12 11 39 39 H 1.07997 * 119.80232 * 179.76921 * 14 13 12 40 40 H 1.07997 * 119.96118 * 179.97438 * 15 14 13 41 41 H 0.97001 * 119.99670 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 0.7653 5 6 2.2364 -1.1212 -0.7647 6 1 1.6112 -1.8589 -1.2678 7 6 3.5490 -0.7763 -1.4712 8 7 4.0086 -1.9352 -2.2407 9 6 5.1522 -1.8626 -2.9500 10 8 5.8024 -0.8351 -2.9516 11 6 5.6147 -3.0294 -3.7254 12 6 4.8736 -4.2133 -3.7226 13 6 5.3083 -5.2982 -4.4531 14 6 6.4840 -5.2246 -5.1828 15 6 7.2298 -4.0632 -5.1904 16 6 6.8044 -2.9584 -4.4651 17 8 7.5355 -1.8174 -4.4709 18 6 8.7243 -1.8554 -5.1057 19 1 9.0182 -2.7412 -5.6491 20 6 9.5699 -0.7569 -5.0608 21 7 9.2116 0.3220 -4.3993 22 14 11.2172 -0.8098 -5.9396 23 1 11.3814 -2.1274 -6.6047 24 1 11.2697 0.2694 -6.9584 25 1 12.3106 -0.6138 -4.9541 26 1 -0.3633 0.8491 0.5788 27 1 -0.3633 -0.9259 0.4459 28 1 -0.3634 0.0767 -1.0248 29 1 1.5817 2.0737 0.5809 30 1 3.1828 1.3084 0.4438 31 1 2.2751 1.7424 -1.0245 32 1 3.1715 -0.8748 1.2685 33 1 1.6112 -1.8579 1.2692 34 1 3.3890 0.0662 -2.1440 35 1 4.3021 -0.5110 -0.7294 36 1 3.4896 -2.7547 -2.2397 37 1 3.9586 -4.2770 -3.1523 38 1 4.7320 -6.2116 -4.4534 39 1 6.8187 -6.0810 -5.7492 40 1 8.1453 -4.0138 -5.7612 41 1 9.8028 1.0904 -4.3683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732796175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:09 Heat of formation + Delta-G solvation = -40.719632 kcal Electronic energy + Delta-G solvation = -22409.164637 eV Core-core repulsion = 19061.554419 eV Total energy + Delta-G solvation = -3347.610218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.31081 -40.14616 -39.24818 -38.02106 -35.42306 -34.32477 -32.29183 -30.57844 -30.36443 -28.67281 -27.62170 -27.11141 -24.42820 -23.09548 -22.16615 -21.53010 -19.91398 -19.83865 -18.95788 -17.79155 -17.25196 -16.44156 -16.33843 -16.03464 -15.86940 -15.51258 -15.36887 -15.13098 -15.08397 -14.62046 -14.28875 -14.17299 -14.04748 -13.55199 -13.38576 -13.10747 -12.99759 -12.87424 -12.69406 -12.54694 -12.36926 -12.28427 -12.09638 -11.95230 -11.44054 -10.94853 -10.85017 -10.80124 -10.39989 -10.07713 -9.77110 -9.03745 -8.45076 -6.16240 0.12168 0.72772 1.31957 1.42822 1.52083 2.08879 2.15414 2.21124 2.77973 2.87641 3.22402 3.46744 3.62069 3.80833 3.84987 3.99840 4.08771 4.17260 4.24059 4.29398 4.49843 4.54558 4.64736 4.69814 4.78340 4.83702 4.92744 4.97819 5.04188 5.05884 5.07651 5.08699 5.14072 5.21015 5.28579 5.46060 5.48385 5.56573 5.61269 5.69641 5.96044 6.17262 6.70405 6.94231 7.47889 7.80439 8.75843 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.004024 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.682081 B = 6956.370176 C = 8464.976998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C -0.124 4.124 4 C -0.161 4.161 5 C -0.162 4.162 6 H 0.130 0.870 7 C 0.158 3.842 8 N -0.714 5.714 9 C 0.545 3.455 10 O -0.572 6.572 11 C -0.246 4.246 12 C -0.029 4.029 13 C -0.200 4.200 14 C -0.040 4.040 15 C -0.258 4.258 16 C 0.149 3.851 17 O -0.190 6.190 18 C -0.428 4.428 19 H 0.107 0.893 20 C -0.023 4.023 21 N -0.906 5.906 22 Si 1.023 2.977 23 H -0.245 1.245 24 H -0.268 1.268 25 H -0.269 1.269 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.412 0.588 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.123 0.877 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.426 -9.169 6.483 19.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.119 4.119 3 C -0.182 4.182 4 C -0.198 4.198 5 C -0.180 4.180 6 H 0.148 0.852 7 C 0.035 3.965 8 N -0.370 5.370 9 C 0.335 3.665 10 O -0.451 6.451 11 C -0.251 4.251 12 C -0.048 4.048 13 C -0.218 4.218 14 C -0.058 4.058 15 C -0.277 4.277 16 C 0.094 3.906 17 O -0.093 6.093 18 C -0.504 4.504 19 H 0.125 0.875 20 C -0.222 4.222 21 N -0.542 5.542 22 Si 0.842 3.158 23 H -0.168 1.168 24 H -0.193 1.193 25 H -0.194 1.194 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.251 0.749 37 H 0.178 0.822 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.141 0.859 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.935 -7.966 6.649 19.015 hybrid contribution 1.036 0.339 -0.418 1.167 sum -14.899 -7.627 6.230 17.860 Atomic orbital electron populations 1.21366 0.89998 1.03046 1.02372 1.21713 0.96002 0.90815 1.03329 1.21420 1.00015 0.94977 1.01743 1.23428 1.02440 1.01307 0.92628 1.22522 0.96811 1.03817 0.94848 0.85172 1.20693 0.94341 0.87952 0.93555 1.45624 1.24226 1.17224 1.49890 1.18598 0.80916 0.87655 0.79310 1.90927 1.56689 1.33189 1.64294 1.19309 0.99409 0.97362 1.09002 1.21315 0.97635 0.89824 0.95978 1.21187 0.98641 1.00063 1.01938 1.21445 0.93267 0.95817 0.95256 1.21305 1.04524 0.94870 1.07049 1.20091 0.91203 0.86944 0.92378 1.84181 1.29483 1.29563 1.66054 1.22095 0.92994 1.03595 1.31688 0.87536 1.26783 1.03839 0.93768 0.97822 1.70339 1.38555 1.04803 1.40495 0.84487 0.74110 0.79748 0.77483 1.16793 1.19328 1.19391 0.91211 0.91093 0.92050 0.90378 0.93467 0.93100 0.89684 0.86396 0.93575 0.93902 0.74930 0.82163 0.81700 0.82782 0.85921 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.85 71.98 0.71 -0.75 16 2 C -0.12 -2.14 2.70 -52.18 -0.14 -2.28 16 3 C -0.12 -2.57 8.86 71.98 0.64 -1.93 16 4 C -0.16 -2.86 9.47 30.59 0.29 -2.57 16 5 C -0.16 -3.30 5.57 -10.79 -0.06 -3.36 16 6 H 0.13 2.11 8.04 -2.38 -0.02 2.09 16 7 C 0.16 4.91 5.04 86.38 0.44 5.34 16 8 N -0.71 -23.61 5.51 -466.29 -2.57 -26.18 16 9 C 0.55 25.62 7.76 86.70 0.67 26.29 16 10 O -0.57 -34.87 15.17 16.88 0.26 -34.62 16 11 C -0.25 -10.92 5.89 -19.99 -0.12 -11.04 16 12 C -0.03 -0.89 9.54 22.52 0.21 -0.67 16 13 C -0.20 -5.35 10.02 22.25 0.22 -5.12 16 14 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16 15 C -0.26 -11.19 9.16 22.36 0.20 -10.98 16 16 C 0.15 7.82 6.66 22.91 0.15 7.98 16 17 O -0.19 -12.34 7.84 0.87 0.01 -12.34 16 18 C -0.43 -26.29 9.49 67.93 0.64 -25.65 16 19 H 0.11 5.87 5.21 -2.91 -0.02 5.85 16 20 C -0.02 -1.39 5.49 84.85 0.47 -0.93 16 21 N -0.91 -60.12 13.67 21.62 0.30 -59.82 16 22 Si 1.02 44.81 29.55 68.60 2.03 46.83 16 23 H -0.24 -9.67 7.11 99.48 0.71 -8.97 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 H 0.07 0.81 7.92 -2.39 -0.02 0.80 16 27 H 0.07 0.75 7.90 -2.39 -0.02 0.73 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 29 H 0.08 1.30 7.92 -2.39 -0.02 1.28 16 30 H 0.05 1.08 7.90 -2.39 -0.02 1.06 16 31 H 0.05 1.17 7.84 -2.39 -0.02 1.15 16 32 H 0.08 1.72 7.94 -2.39 -0.02 1.70 16 33 H 0.12 1.55 8.05 -2.38 -0.02 1.53 16 34 H 0.05 1.62 7.77 -2.39 -0.02 1.60 16 35 H 0.04 1.51 7.87 -2.39 -0.02 1.49 16 36 H 0.41 9.77 6.43 -92.70 -0.60 9.17 16 37 H 0.16 3.25 6.40 -2.91 -0.02 3.23 16 38 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.12 5.39 5.64 -2.91 -0.02 5.38 16 41 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 Total: -1.00 -88.21 343.98 5.02 -83.19 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.45 Total: 29.63 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 4.56 Total: -26.70 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -2.27 Total: -86.00 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: 0.26 Total: -46.96 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -88.21 5.02 -83.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732796175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.472 kcal (2) G-P(sol) polarization free energy of solvation -88.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds