Wall clock time and date at job start Tue Mar 31 2020 07:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 115.55022 * 2 1 4 4 C 1.53007 * 117.50175 * 214.33018 * 2 1 3 5 5 C 1.53005 * 117.49791 * 145.66877 * 2 1 3 6 6 H 1.08996 * 117.49889 * 359.97438 * 5 2 1 7 7 C 1.52999 * 117.49464 * 214.97675 * 5 2 1 8 8 N 1.46505 * 109.46862 * 175.00282 * 7 5 2 9 9 C 1.34779 * 120.00030 * 180.02562 * 8 7 5 10 10 O 1.21596 * 119.99892 * 359.97438 * 9 8 7 11 11 C 1.47536 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.39663 * 120.19446 * 0.02562 * 11 9 8 13 13 C 1.37831 * 119.91711 * 179.97438 * 12 11 9 14 14 C 1.38568 * 120.32611 * 0.02562 * 13 12 11 15 15 C 1.38029 * 120.39935 * 359.97438 * 14 13 12 16 16 C 1.38842 * 120.07369 * 359.74466 * 15 14 13 17 17 O 1.35512 * 120.16371 * 180.27334 * 16 15 14 18 18 C 1.34817 * 116.99965 * 354.39902 * 17 16 15 19 19 H 1.07991 * 120.00432 * 5.04772 * 18 17 16 20 20 C 1.38695 * 119.99836 * 185.05252 * 18 17 16 21 21 N 1.31517 * 120.00294 * 179.97438 * 20 18 17 22 22 Si 1.86809 * 120.00108 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46888 * 90.00096 * 22 20 18 24 24 H 1.48502 * 109.46823 * 209.99938 * 22 20 18 25 25 H 1.48496 * 109.46810 * 330.00362 * 22 20 18 26 26 H 1.08998 * 109.46964 * 34.42185 * 1 2 3 27 27 H 1.08994 * 109.47082 * 274.41410 * 1 2 3 28 28 H 1.09005 * 109.46517 * 154.41888 * 1 2 3 29 29 H 1.08992 * 109.47371 * 85.58332 * 3 2 1 30 30 H 1.08997 * 109.47290 * 205.58696 * 3 2 1 31 31 H 1.09007 * 109.46883 * 325.57815 * 3 2 1 32 32 H 1.09004 * 117.49537 * 359.97438 * 4 2 1 33 33 H 1.08994 * 117.49964 * 145.02070 * 4 2 1 34 34 H 1.08997 * 109.47643 * 294.99987 * 7 5 2 35 35 H 1.09001 * 109.47223 * 55.00765 * 7 5 2 36 36 H 0.97001 * 119.99844 * 359.97438 * 8 7 5 37 37 H 1.08006 * 120.04371 * 359.94836 * 12 11 9 38 38 H 1.08005 * 119.83721 * 179.97438 * 13 12 11 39 39 H 1.07998 * 119.80524 * 179.97438 * 14 13 12 40 40 H 1.08001 * 119.96511 * 180.02562 * 15 14 13 41 41 H 0.96998 * 120.00726 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1208 -0.7654 5 6 2.2364 -1.1208 0.7654 6 1 1.6112 -1.8578 1.2693 7 6 3.5490 -0.7754 1.4717 8 7 4.0086 -1.9338 2.2419 9 6 5.1523 -1.8608 2.9511 10 8 5.8030 -0.8336 2.9514 11 6 5.6148 -3.0271 3.7272 12 6 4.8709 -4.2092 3.7294 13 6 5.3086 -5.2955 4.4560 14 6 6.4841 -5.2214 5.1860 15 6 7.2297 -4.0598 5.1932 16 6 6.8073 -2.9574 4.4625 17 8 7.5407 -1.8179 4.4639 18 6 8.6086 -1.7783 5.2859 19 1 8.8937 -2.6581 5.8435 20 6 9.3409 -0.6076 5.4156 21 7 10.3823 -0.5688 6.2179 22 14 8.8480 0.9141 4.4507 23 1 7.8895 1.7184 5.2504 24 1 10.0554 1.7283 4.1599 25 1 8.2074 0.5053 3.1749 26 1 -0.3633 0.8477 -0.5809 27 1 -0.3633 0.0791 1.0246 28 1 -0.3632 -0.9270 -0.4438 29 1 2.2752 1.7423 1.0245 30 1 3.1828 1.3084 -0.4438 31 1 1.5817 2.0738 -0.5810 32 1 1.6113 -1.8583 -1.2686 33 1 3.1716 -0.8747 -1.2685 34 1 4.3022 -0.5105 0.7296 35 1 3.3890 0.0676 2.1440 36 1 3.4893 -2.7531 2.2420 37 1 3.9536 -4.2718 3.1628 38 1 4.7321 -6.2088 4.4571 39 1 6.8190 -6.0775 5.7527 40 1 8.1450 -4.0099 5.7643 41 1 10.8943 0.2500 6.3089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732796176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:12 Heat of formation + Delta-G solvation = -18.617570 kcal Electronic energy + Delta-G solvation = -22524.800750 eV Core-core repulsion = 19178.148949 eV Total energy + Delta-G solvation = -3346.651801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.84817 -39.04037 -37.93482 -36.50666 -34.03527 -32.44217 -30.89897 -29.52428 -29.18995 -27.92561 -26.42251 -25.21176 -23.05694 -21.56003 -21.05913 -20.16450 -18.98128 -17.90137 -17.64842 -16.33641 -16.03653 -15.14227 -14.79014 -14.58375 -14.45197 -14.15861 -14.05968 -13.84910 -13.75540 -13.61590 -12.93195 -12.75943 -12.57350 -12.35564 -12.31267 -12.18081 -12.14726 -11.59090 -11.39343 -11.27022 -11.20193 -10.81985 -10.71082 -10.13284 -10.03996 -9.88496 -9.59054 -9.02021 -8.88220 -8.68179 -8.36334 -7.46972 -6.46277 -4.11358 1.58765 2.19595 3.31277 3.32813 3.38894 3.59331 3.67376 3.69254 4.36649 4.42066 4.51883 4.55571 4.63678 4.74968 4.84402 5.09322 5.10433 5.28093 5.37044 5.39958 5.41065 5.57932 5.62950 5.65281 5.69426 5.71429 5.75914 5.85073 5.91694 5.95005 6.04722 6.07066 6.16645 6.38573 6.56054 6.81192 6.85203 7.01880 7.15477 7.48871 7.68717 7.95609 7.98513 8.87385 8.91418 9.52869 10.58875 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.004665 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.671104 B = 6000.582377 C = 7726.291814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C -0.120 4.120 4 C -0.169 4.169 5 C -0.159 4.159 6 H 0.109 0.891 7 C 0.156 3.844 8 N -0.739 5.739 9 C 0.560 3.440 10 O -0.519 6.519 11 C -0.226 4.226 12 C -0.041 4.041 13 C -0.221 4.221 14 C -0.051 4.051 15 C -0.227 4.227 16 C 0.201 3.799 17 O -0.166 6.166 18 C -0.397 4.397 19 H 0.108 0.892 20 C 0.072 3.928 21 N -0.870 5.870 22 Si 0.900 3.100 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.239 1.239 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.394 0.606 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.633 -3.403 -10.650 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.121 4.121 3 C -0.177 4.177 4 C -0.206 4.206 5 C -0.177 4.177 6 H 0.127 0.873 7 C 0.032 3.968 8 N -0.394 5.394 9 C 0.350 3.650 10 O -0.395 6.395 11 C -0.231 4.231 12 C -0.060 4.060 13 C -0.240 4.240 14 C -0.070 4.070 15 C -0.246 4.246 16 C 0.143 3.857 17 O -0.066 6.066 18 C -0.472 4.472 19 H 0.126 0.874 20 C -0.133 4.133 21 N -0.506 5.506 22 Si 0.725 3.275 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.161 1.161 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.229 0.771 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.941 -2.240 -10.684 20.153 hybrid contribution -0.267 0.011 -0.143 0.303 sum -17.208 -2.229 -10.827 20.453 Atomic orbital electron populations 1.21359 0.91948 1.01893 1.01967 1.21589 0.94713 0.91568 1.04215 1.21386 1.00175 0.93820 1.02324 1.23377 1.02536 1.00996 0.93686 1.22641 0.98629 1.02234 0.94194 0.87345 1.20725 0.92737 0.88911 0.94451 1.45866 1.25956 1.16155 1.51446 1.18201 0.79993 0.88034 0.78806 1.90854 1.54881 1.31130 1.62671 1.18869 0.98336 0.95774 1.10113 1.20763 0.97031 0.91724 0.96436 1.20538 0.99685 0.98904 1.04914 1.20964 0.93679 0.96514 0.95813 1.21290 1.03681 0.93552 1.06093 1.19025 0.88634 0.86634 0.91359 1.83781 1.36232 1.31419 1.55144 1.20930 1.03412 1.01011 1.21816 0.87439 1.24488 0.94371 0.98637 0.95845 1.69635 1.16707 1.29423 1.34821 0.86202 0.77668 0.80717 0.82938 1.19936 1.21247 1.16147 0.92060 0.92132 0.92504 0.91832 0.92109 0.92127 0.88783 0.88544 0.91689 0.91426 0.77127 0.86859 0.87017 0.86832 0.84421 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.85 37.16 0.37 -0.48 16 2 C -0.12 -1.08 2.70 -154.50 -0.42 -1.49 16 3 C -0.12 -1.10 8.85 37.16 0.33 -0.77 16 4 C -0.17 -1.51 9.47 -26.69 -0.25 -1.76 16 5 C -0.16 -1.58 5.57 -90.58 -0.50 -2.08 16 6 H 0.11 0.97 8.04 -51.93 -0.42 0.55 16 7 C 0.16 2.11 5.04 -4.04 -0.02 2.09 16 8 N -0.74 -11.18 5.51 -61.34 -0.34 -11.52 16 9 C 0.56 11.55 7.76 -12.47 -0.10 11.45 16 10 O -0.52 -13.15 15.17 -16.57 -0.25 -13.41 16 11 C -0.23 -4.65 5.89 -104.81 -0.62 -5.27 16 12 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 13 C -0.22 -3.45 10.02 -39.61 -0.40 -3.85 16 14 C -0.05 -0.88 10.03 -39.54 -0.40 -1.28 16 15 C -0.23 -4.83 9.16 -39.43 -0.36 -5.19 16 16 C 0.20 4.81 6.66 -38.60 -0.26 4.55 16 17 O -0.17 -4.61 6.67 -21.04 -0.14 -4.75 16 18 C -0.40 -11.46 9.95 30.90 0.31 -11.15 16 19 H 0.11 3.08 5.44 -52.49 -0.29 2.80 16 20 C 0.07 2.09 5.49 -17.52 -0.10 1.99 16 21 N -0.87 -25.47 13.96 55.48 0.77 -24.69 16 22 Si 0.90 23.44 28.62 -169.99 -4.86 18.58 16 23 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.24 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.06 0.41 7.93 -51.93 -0.41 -0.01 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 29 H 0.06 0.62 7.84 -51.93 -0.41 0.21 16 30 H 0.06 0.59 7.90 -51.93 -0.41 0.18 16 31 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 32 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 33 H 0.10 0.90 7.94 -51.93 -0.41 0.49 16 34 H 0.06 0.96 7.88 -51.93 -0.41 0.55 16 35 H 0.07 1.00 7.77 -51.93 -0.40 0.60 16 36 H 0.39 4.70 6.43 -40.82 -0.26 4.43 16 37 H 0.11 1.37 6.40 -52.48 -0.34 1.03 16 38 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.14 3.04 5.64 -52.49 -0.30 2.74 16 41 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -32.93 342.86 -8.13 -41.07 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.69 Total: 3.83 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.79 Total: -14.26 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.44 Total: -36.21 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.39 Total: -18.16 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.86 Total: 18.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.93 -8.13 -41.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732796176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.448 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds