Wall clock time and date at job start Tue Mar 31 2020 07:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 115.55022 * 2 1 4 4 C 1.53007 * 117.50175 * 214.33018 * 2 1 3 5 5 C 1.53005 * 117.49791 * 145.66877 * 2 1 3 6 6 H 1.08996 * 117.49889 * 359.97438 * 5 2 1 7 7 C 1.52999 * 117.49464 * 214.97675 * 5 2 1 8 8 N 1.46505 * 109.46862 * 175.00282 * 7 5 2 9 9 C 1.34779 * 120.00030 * 180.02562 * 8 7 5 10 10 O 1.21596 * 119.99892 * 359.97438 * 9 8 7 11 11 C 1.47536 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.39663 * 120.19446 * 0.02562 * 11 9 8 13 13 C 1.37831 * 119.91711 * 179.97438 * 12 11 9 14 14 C 1.38568 * 120.32611 * 0.02562 * 13 12 11 15 15 C 1.38029 * 120.39935 * 359.97438 * 14 13 12 16 16 C 1.38842 * 120.07369 * 359.74466 * 15 14 13 17 17 O 1.35512 * 120.16371 * 180.27334 * 16 15 14 18 18 C 1.34817 * 116.99965 * 354.39902 * 17 16 15 19 19 H 1.07991 * 120.00432 * 5.04772 * 18 17 16 20 20 C 1.38695 * 119.99836 * 185.05252 * 18 17 16 21 21 N 1.31517 * 120.00294 * 179.97438 * 20 18 17 22 22 Si 1.86809 * 120.00108 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46888 * 90.00096 * 22 20 18 24 24 H 1.48502 * 109.46823 * 209.99938 * 22 20 18 25 25 H 1.48496 * 109.46810 * 330.00362 * 22 20 18 26 26 H 1.08998 * 109.46964 * 34.42185 * 1 2 3 27 27 H 1.08994 * 109.47082 * 274.41410 * 1 2 3 28 28 H 1.09005 * 109.46517 * 154.41888 * 1 2 3 29 29 H 1.08992 * 109.47371 * 85.58332 * 3 2 1 30 30 H 1.08997 * 109.47290 * 205.58696 * 3 2 1 31 31 H 1.09007 * 109.46883 * 325.57815 * 3 2 1 32 32 H 1.09004 * 117.49537 * 359.97438 * 4 2 1 33 33 H 1.08994 * 117.49964 * 145.02070 * 4 2 1 34 34 H 1.08997 * 109.47643 * 294.99987 * 7 5 2 35 35 H 1.09001 * 109.47223 * 55.00765 * 7 5 2 36 36 H 0.97001 * 119.99844 * 359.97438 * 8 7 5 37 37 H 1.08006 * 120.04371 * 359.94836 * 12 11 9 38 38 H 1.08005 * 119.83721 * 179.97438 * 13 12 11 39 39 H 1.07998 * 119.80524 * 179.97438 * 14 13 12 40 40 H 1.08001 * 119.96511 * 180.02562 * 15 14 13 41 41 H 0.96998 * 120.00726 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1208 -0.7654 5 6 2.2364 -1.1208 0.7654 6 1 1.6112 -1.8578 1.2693 7 6 3.5490 -0.7754 1.4717 8 7 4.0086 -1.9338 2.2419 9 6 5.1523 -1.8608 2.9511 10 8 5.8030 -0.8336 2.9514 11 6 5.6148 -3.0271 3.7272 12 6 4.8709 -4.2092 3.7294 13 6 5.3086 -5.2955 4.4560 14 6 6.4841 -5.2214 5.1860 15 6 7.2297 -4.0598 5.1932 16 6 6.8073 -2.9574 4.4625 17 8 7.5407 -1.8179 4.4639 18 6 8.6086 -1.7783 5.2859 19 1 8.8937 -2.6581 5.8435 20 6 9.3409 -0.6076 5.4156 21 7 10.3823 -0.5688 6.2179 22 14 8.8480 0.9141 4.4507 23 1 7.8895 1.7184 5.2504 24 1 10.0554 1.7283 4.1599 25 1 8.2074 0.5053 3.1749 26 1 -0.3633 0.8477 -0.5809 27 1 -0.3633 0.0791 1.0246 28 1 -0.3632 -0.9270 -0.4438 29 1 2.2752 1.7423 1.0245 30 1 3.1828 1.3084 -0.4438 31 1 1.5817 2.0738 -0.5810 32 1 1.6113 -1.8583 -1.2686 33 1 3.1716 -0.8747 -1.2685 34 1 4.3022 -0.5105 0.7296 35 1 3.3890 0.0676 2.1440 36 1 3.4893 -2.7531 2.2420 37 1 3.9536 -4.2718 3.1628 38 1 4.7321 -6.2088 4.4571 39 1 6.8190 -6.0775 5.7527 40 1 8.1450 -4.0099 5.7643 41 1 10.8943 0.2500 6.3089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732796176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:12 Heat of formation + Delta-G solvation = -39.231006 kcal Electronic energy + Delta-G solvation = -22525.694615 eV Core-core repulsion = 19178.148949 eV Total energy + Delta-G solvation = -3347.545666 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.42688 -40.22333 -39.29808 -38.15115 -35.46737 -34.52525 -32.35342 -30.79861 -30.38443 -28.67793 -27.63029 -27.03681 -24.52896 -22.98398 -22.16077 -21.65168 -20.00290 -19.78628 -19.11774 -17.92418 -17.33402 -16.59856 -16.38483 -16.00122 -15.86682 -15.55341 -15.49069 -15.18124 -15.12695 -14.64227 -14.32960 -14.19235 -14.10019 -14.02712 -13.38841 -13.15572 -13.08023 -12.88516 -12.83987 -12.59673 -12.41591 -12.30490 -12.04087 -11.95215 -11.54779 -10.98616 -10.95040 -10.87762 -10.43027 -10.12055 -9.81382 -9.15084 -8.59168 -6.27809 0.04934 0.64682 1.22628 1.28173 1.56375 2.01503 2.16255 2.28367 2.74356 2.78192 3.01835 3.16370 3.61633 3.80107 3.83683 3.94941 4.02763 4.17163 4.23699 4.26436 4.46980 4.51644 4.60721 4.69175 4.77918 4.80261 4.84778 4.93520 5.03858 5.05639 5.06647 5.08509 5.20782 5.28462 5.28720 5.45551 5.47278 5.52407 5.61627 5.69255 5.83209 6.15517 6.64142 6.78200 7.38443 7.58378 8.51439 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.004665 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.671104 B = 6000.582377 C = 7726.291814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 C -0.124 4.124 4 C -0.162 4.162 5 C -0.161 4.161 6 H 0.130 0.870 7 C 0.156 3.844 8 N -0.712 5.712 9 C 0.552 3.448 10 O -0.576 6.576 11 C -0.234 4.234 12 C -0.029 4.029 13 C -0.189 4.189 14 C -0.042 4.042 15 C -0.251 4.251 16 C 0.161 3.839 17 O -0.211 6.211 18 C -0.404 4.404 19 H 0.093 0.907 20 C 0.027 3.973 21 N -0.911 5.911 22 Si 0.954 3.046 23 H -0.276 1.276 24 H -0.264 1.264 25 H -0.268 1.268 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.414 0.586 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.152 0.848 40 H 0.115 0.885 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.846 -6.353 -12.195 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.119 4.119 3 C -0.181 4.181 4 C -0.199 4.199 5 C -0.180 4.180 6 H 0.148 0.852 7 C 0.032 3.968 8 N -0.367 5.367 9 C 0.342 3.658 10 O -0.457 6.457 11 C -0.239 4.239 12 C -0.048 4.048 13 C -0.207 4.207 14 C -0.060 4.060 15 C -0.270 4.270 16 C 0.107 3.893 17 O -0.115 6.115 18 C -0.480 4.480 19 H 0.110 0.890 20 C -0.173 4.173 21 N -0.551 5.551 22 Si 0.779 3.221 23 H -0.202 1.202 24 H -0.188 1.188 25 H -0.193 1.193 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.252 0.748 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.169 0.831 40 H 0.133 0.867 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.229 -5.256 -12.253 25.068 hybrid contribution 0.684 0.563 0.233 0.916 sum -20.545 -4.692 -12.020 24.261 Atomic orbital electron populations 1.21371 0.90238 1.02958 1.02338 1.21704 0.95877 0.90911 1.03439 1.21418 1.00053 0.94865 1.01788 1.23441 1.02471 1.01255 0.92691 1.22541 0.96922 1.03717 0.94785 0.85233 1.20754 0.94379 0.87942 0.93706 1.45633 1.24088 1.17414 1.49535 1.18448 0.80897 0.87378 0.79083 1.90838 1.56944 1.33178 1.64699 1.19299 0.97697 0.97617 1.09289 1.21364 0.97816 0.89675 0.95924 1.21248 0.98118 1.00243 1.01059 1.21457 0.93487 0.95720 0.95360 1.21339 1.04106 0.94924 1.06666 1.19784 0.89958 0.86518 0.92999 1.83770 1.37131 1.33713 1.56861 1.20913 1.04276 1.00640 1.22150 0.88985 1.25019 0.94820 1.00503 0.96966 1.69675 1.18149 1.30242 1.37023 0.85433 0.77614 0.78740 0.80354 1.20213 1.18847 1.19279 0.91334 0.92059 0.91207 0.92959 0.93262 0.90608 0.86625 0.89504 0.93398 0.93141 0.74755 0.81595 0.81432 0.83070 0.86717 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.85 71.98 0.71 -0.57 16 2 C -0.12 -1.85 2.70 -52.18 -0.14 -1.99 16 3 C -0.12 -2.20 8.85 71.98 0.64 -1.56 16 4 C -0.16 -2.43 9.47 30.62 0.29 -2.14 16 5 C -0.16 -2.78 5.57 -10.76 -0.06 -2.84 16 6 H 0.13 1.72 8.04 -2.39 -0.02 1.70 16 7 C 0.16 4.13 5.04 86.38 0.43 4.56 16 8 N -0.71 -20.18 5.51 -466.25 -2.57 -22.75 16 9 C 0.55 22.80 7.76 86.70 0.67 23.47 16 10 O -0.58 -30.65 15.17 16.88 0.26 -30.39 16 11 C -0.23 -9.38 5.89 -19.99 -0.12 -9.49 16 12 C -0.03 -0.80 9.53 22.52 0.21 -0.58 16 13 C -0.19 -4.63 10.02 22.25 0.22 -4.41 16 14 C -0.04 -1.29 10.03 22.30 0.22 -1.07 16 15 C -0.25 -10.80 9.16 22.36 0.20 -10.60 16 16 C 0.16 7.91 6.66 22.91 0.15 8.06 16 17 O -0.21 -12.52 6.67 0.90 0.01 -12.51 16 18 C -0.40 -25.06 9.95 67.93 0.68 -24.38 16 19 H 0.09 5.75 5.44 -2.92 -0.02 5.74 16 20 C 0.03 1.68 5.49 84.85 0.47 2.14 16 21 N -0.91 -56.35 13.96 21.62 0.30 -56.05 16 22 Si 0.95 51.75 28.62 68.60 1.96 53.71 16 23 H -0.28 -14.80 7.11 99.48 0.71 -14.09 16 24 H -0.26 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.27 -15.69 7.11 99.48 0.71 -14.99 16 26 H 0.07 0.70 7.93 -2.39 -0.02 0.68 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.63 7.90 -2.38 -0.02 0.61 16 29 H 0.05 1.03 7.84 -2.39 -0.02 1.01 16 30 H 0.05 0.96 7.90 -2.39 -0.02 0.94 16 31 H 0.07 1.09 7.93 -2.38 -0.02 1.07 16 32 H 0.12 1.28 8.05 -2.38 -0.02 1.26 16 33 H 0.09 1.49 7.94 -2.39 -0.02 1.47 16 34 H 0.05 1.44 7.88 -2.39 -0.02 1.43 16 35 H 0.05 1.53 7.77 -2.39 -0.02 1.51 16 36 H 0.41 8.05 6.43 -92.71 -0.60 7.45 16 37 H 0.17 2.73 6.40 -2.91 -0.02 2.72 16 38 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 39 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.11 5.40 5.64 -2.91 -0.02 5.38 16 41 H 0.29 16.28 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -80.61 342.86 4.99 -75.61 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.45 Total: 13.76 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 4.59 Total: -21.39 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -2.27 Total: -78.80 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: 0.26 Total: -42.90 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 1.96 Total: 53.71 kcal Total: -80.61 4.99 -75.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732796176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.383 kcal (2) G-P(sol) polarization free energy of solvation -80.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds