Wall clock time and date at job start Tue Mar 31 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00100 * 2 1 4 4 H 1.48505 * 109.46920 * 239.99977 * 3 2 1 5 5 H 1.48495 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46975 * 120.00041 * 3 2 1 7 7 C 1.37875 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00363 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47510 * 180.02562 * 9 7 2 11 11 C 1.46497 * 119.99689 * 90.00036 * 10 9 7 12 12 C 1.50697 * 109.46873 * 90.00600 * 11 10 9 13 13 C 1.34517 * 125.79067 * 90.00095 * 12 11 10 14 14 C 1.41388 * 106.83576 * 179.97438 * 13 12 11 15 15 C 1.34511 * 106.84442 * 359.97438 * 14 13 12 16 16 O 1.34295 * 108.42007 * 0.27361 * 15 14 13 17 17 C 1.34777 * 119.99837 * 270.00579 * 10 9 7 18 18 O 1.21614 * 120.00007 * 180.02562 * 17 10 9 19 19 C 1.47102 * 119.99950 * 359.97438 * 17 10 9 20 20 C 1.33003 * 119.99761 * 180.02562 * 19 17 10 21 21 C 1.51448 * 126.34003 * 359.68827 * 20 19 17 22 22 C 1.54273 * 106.84980 * 180.24350 * 21 20 19 23 23 C 1.54985 * 103.66260 * 23.48626 * 22 21 20 24 24 C 1.51842 * 126.33907 * 180.02562 * 20 19 17 25 25 H 0.97004 * 119.99383 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46569 * 60.00229 * 9 7 2 27 27 H 1.08997 * 109.47563 * 300.00775 * 9 7 2 28 28 H 1.09000 * 109.47386 * 330.00219 * 11 10 9 29 29 H 1.09004 * 109.46598 * 210.00110 * 11 10 9 30 30 H 1.07992 * 126.58259 * 359.93887 * 13 12 11 31 31 H 1.08001 * 126.57171 * 180.02562 * 14 13 12 32 32 H 1.08002 * 125.78644 * 179.97438 * 15 14 13 33 33 H 1.07998 * 120.00526 * 0.02562 * 19 17 10 34 34 H 1.08999 * 109.98468 * 299.73226 * 21 20 19 35 35 H 1.08998 * 109.98247 * 61.03409 * 21 20 19 36 36 H 1.08997 * 110.79779 * 264.85970 * 22 21 20 37 37 H 1.08999 * 110.43069 * 141.93051 * 22 21 20 38 38 H 1.08997 * 110.83158 * 204.49467 * 23 22 21 39 39 H 1.08996 * 110.83576 * 80.91229 * 23 22 21 40 40 H 1.08998 * 110.43664 * 274.92363 * 24 20 19 41 41 H 1.08996 * 110.44378 * 37.32234 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 2.6788 -4.1695 1.2682 12 6 1.7621 -5.2837 1.7031 13 6 1.8976 -6.5835 1.3846 14 6 0.8260 -7.2700 2.0006 15 6 0.1001 -6.3487 2.6591 16 8 0.6685 -5.1466 2.4707 17 6 2.6409 -4.1249 -1.1678 18 8 3.4307 -5.0496 -1.1678 19 6 2.1626 -3.5661 -2.4417 20 6 2.5944 -4.0718 -3.5935 21 6 3.5774 -5.2117 -3.7608 22 6 3.7625 -5.4237 -5.2776 23 6 3.3744 -4.0533 -5.8888 24 6 2.1985 -3.6086 -4.9843 25 1 -0.4849 0.8401 -0.0004 26 1 0.6240 -2.5566 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.6866 -3.3879 2.0279 29 1 3.6883 -4.5596 1.1378 30 1 2.6753 -7.0191 0.7750 31 1 0.6287 -8.3307 1.9524 32 1 -0.7916 -6.5422 3.2369 33 1 1.4608 -2.7451 -2.4417 34 1 4.5305 -4.9524 -3.2997 35 1 3.1777 -6.1181 -3.3061 36 1 3.0989 -6.2075 -5.6427 37 1 4.8013 -5.6636 -5.5043 38 1 3.0468 -4.1685 -6.9220 39 1 4.2037 -3.3493 -5.8201 40 1 1.2733 -4.0923 -5.2976 41 1 2.0869 -2.5246 -5.0071 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749380020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:27 Heat of formation + Delta-G solvation = -15.612253 kcal Electronic energy + Delta-G solvation = -23013.831393 eV Core-core repulsion = 19667.309912 eV Total energy + Delta-G solvation = -3346.521480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.15401 -39.25672 -37.53299 -35.06634 -32.88286 -32.47002 -31.54665 -30.10940 -28.57300 -27.23788 -26.19163 -24.30679 -22.90225 -21.32190 -20.68002 -20.47308 -19.31815 -17.42861 -17.13113 -16.54154 -16.21217 -15.80475 -15.40827 -15.19700 -14.56125 -14.36308 -14.09082 -13.59531 -13.14993 -12.84248 -12.56262 -12.43718 -12.38953 -12.29785 -12.08092 -11.79251 -11.48069 -11.14640 -11.03431 -10.99269 -10.93415 -10.82294 -10.56994 -10.48407 -10.14994 -9.79327 -9.56516 -9.03507 -8.61722 -8.53639 -8.14131 -7.76773 -6.16934 -4.24380 1.95321 2.07940 2.93957 3.25262 3.30097 3.32790 3.38131 3.97295 4.11728 4.34910 4.73378 4.87062 5.10196 5.13725 5.16471 5.34084 5.36889 5.44982 5.55474 5.61508 5.74418 5.75574 5.93572 5.96469 6.03854 6.11349 6.13638 6.15539 6.23623 6.32632 6.42648 6.45407 6.51781 6.71823 6.85815 6.94489 7.00040 7.24388 7.50733 7.55491 7.77500 8.06353 8.31179 8.80211 9.01305 9.43070 10.89950 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.008074 B = 0.007643 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3466.903948 B = 3662.800047 C = 6561.545024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.238 3.762 10 N -0.589 5.589 11 C 0.197 3.803 12 C -0.015 4.015 13 C -0.199 4.199 14 C -0.220 4.220 15 C -0.049 4.049 16 O -0.169 6.169 17 C 0.553 3.447 18 O -0.570 6.570 19 C -0.187 4.187 20 C -0.061 4.061 21 C -0.086 4.086 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.098 4.098 25 H 0.266 0.734 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.197 0.803 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.414 -10.043 -4.033 11.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.118 3.882 10 N -0.318 5.318 11 C 0.073 3.927 12 C -0.067 4.067 13 C -0.219 4.219 14 C -0.239 4.239 15 C -0.118 4.118 16 O -0.065 6.065 17 C 0.345 3.655 18 O -0.453 6.453 19 C -0.207 4.207 20 C -0.063 4.063 21 C -0.122 4.122 22 C -0.166 4.166 23 C -0.160 4.160 24 C -0.135 4.135 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.214 0.786 33 H 0.159 0.841 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.536 -10.073 -3.895 11.094 hybrid contribution 0.133 0.837 0.080 0.851 sum 2.669 -9.237 -3.815 10.344 Atomic orbital electron populations 1.69927 1.06003 1.27390 1.49631 1.24937 0.94842 0.99247 0.94751 0.86568 0.79553 0.82588 0.78844 1.20074 1.21154 1.20110 1.21459 0.93599 0.90406 1.52128 0.92043 1.19503 0.87483 0.82319 0.98870 1.48158 1.45760 1.34405 1.03477 1.19664 0.93839 0.92074 0.87092 1.23270 0.89527 0.97129 0.96738 1.21649 1.02013 0.93114 1.05171 1.21788 0.98171 1.00416 1.03564 1.23952 1.00715 0.82248 1.04841 1.84083 1.34380 1.32515 1.55484 1.18434 0.80552 0.81952 0.84599 1.90645 1.36286 1.30323 1.88079 1.22261 1.04477 1.03161 0.90845 1.22729 0.94741 0.95002 0.93844 1.21194 0.99059 0.97333 0.94653 1.22468 1.01011 0.97132 0.96037 1.22498 0.98036 0.97172 0.98324 1.21514 0.98534 1.01497 0.91948 0.92467 0.94141 0.94491 0.88661 0.87731 0.83518 0.84013 0.78629 0.84094 0.90034 0.90275 0.91779 0.91741 0.91505 0.91286 0.90137 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.73 13.29 55.43 0.74 -23.99 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -14.04 9.39 -34.44 -0.32 -14.36 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.24 5.78 4.88 -5.19 -0.03 5.75 16 10 N -0.59 -12.71 2.44 -177.83 -0.43 -13.14 16 11 C 0.20 3.78 5.94 -5.20 -0.03 3.75 16 12 C -0.01 -0.28 6.90 -35.63 -0.25 -0.52 16 13 C -0.20 -3.44 10.81 -39.70 -0.43 -3.87 16 14 C -0.22 -3.28 10.91 -39.70 -0.43 -3.72 16 15 C -0.05 -0.73 12.09 29.41 0.36 -0.37 16 16 O -0.17 -3.12 10.65 5.71 0.06 -3.06 16 17 C 0.55 11.76 7.62 -12.66 -0.10 11.66 16 18 O -0.57 -12.29 13.68 5.27 0.07 -12.22 16 19 C -0.19 -3.68 9.13 -37.80 -0.35 -4.02 16 20 C -0.06 -1.02 6.15 -100.23 -0.62 -1.64 16 21 C -0.09 -1.32 4.81 -26.85 -0.13 -1.45 16 22 C -0.13 -1.53 6.88 -25.02 -0.17 -1.70 16 23 C -0.12 -1.40 6.94 -24.69 -0.17 -1.58 16 24 C -0.10 -1.31 6.64 -26.33 -0.17 -1.49 16 25 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.04 1.02 6.10 -51.92 -0.32 0.70 16 27 H 0.04 0.96 8.07 -51.93 -0.42 0.55 16 28 H 0.10 1.78 8.07 -51.93 -0.42 1.37 16 29 H 0.10 1.89 7.42 -51.93 -0.39 1.50 16 30 H 0.15 2.50 8.06 -52.49 -0.42 2.08 16 31 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.20 2.04 8.06 -52.49 -0.42 1.61 16 33 H 0.14 2.92 6.22 -52.49 -0.33 2.59 16 34 H 0.08 1.36 7.67 -51.93 -0.40 0.96 16 35 H 0.08 1.30 7.68 -51.93 -0.40 0.90 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -29.35 345.84 -8.32 -37.67 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.01 Total: 5.86 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.94 Total: -11.93 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.30 Total: -37.13 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.13 Total: -15.27 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.35 -8.32 -37.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749380020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.060 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds