Wall clock time and date at job start Tue Mar 31 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00100 * 2 1 4 4 H 1.48505 * 109.46920 * 239.99977 * 3 2 1 5 5 H 1.48495 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46975 * 120.00041 * 3 2 1 7 7 C 1.37875 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00363 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47510 * 180.02562 * 9 7 2 11 11 C 1.46497 * 119.99689 * 90.00036 * 10 9 7 12 12 C 1.50697 * 109.46873 * 90.00600 * 11 10 9 13 13 C 1.34517 * 125.79067 * 90.00095 * 12 11 10 14 14 C 1.41388 * 106.83576 * 179.97438 * 13 12 11 15 15 C 1.34511 * 106.84442 * 359.97438 * 14 13 12 16 16 O 1.34295 * 108.42007 * 0.27361 * 15 14 13 17 17 C 1.34777 * 119.99837 * 270.00579 * 10 9 7 18 18 O 1.21614 * 120.00007 * 180.02562 * 17 10 9 19 19 C 1.47102 * 119.99950 * 359.97438 * 17 10 9 20 20 C 1.33003 * 119.99761 * 180.02562 * 19 17 10 21 21 C 1.51448 * 126.34003 * 359.68827 * 20 19 17 22 22 C 1.54273 * 106.84980 * 180.24350 * 21 20 19 23 23 C 1.54985 * 103.66260 * 23.48626 * 22 21 20 24 24 C 1.51842 * 126.33907 * 180.02562 * 20 19 17 25 25 H 0.97004 * 119.99383 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46569 * 60.00229 * 9 7 2 27 27 H 1.08997 * 109.47563 * 300.00775 * 9 7 2 28 28 H 1.09000 * 109.47386 * 330.00219 * 11 10 9 29 29 H 1.09004 * 109.46598 * 210.00110 * 11 10 9 30 30 H 1.07992 * 126.58259 * 359.93887 * 13 12 11 31 31 H 1.08001 * 126.57171 * 180.02562 * 14 13 12 32 32 H 1.08002 * 125.78644 * 179.97438 * 15 14 13 33 33 H 1.07998 * 120.00526 * 0.02562 * 19 17 10 34 34 H 1.08999 * 109.98468 * 299.73226 * 21 20 19 35 35 H 1.08998 * 109.98247 * 61.03409 * 21 20 19 36 36 H 1.08997 * 110.79779 * 264.85970 * 22 21 20 37 37 H 1.08999 * 110.43069 * 141.93051 * 22 21 20 38 38 H 1.08997 * 110.83158 * 204.49467 * 23 22 21 39 39 H 1.08996 * 110.83576 * 80.91229 * 23 22 21 40 40 H 1.08998 * 110.43664 * 274.92363 * 24 20 19 41 41 H 1.08996 * 110.44378 * 37.32234 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 2.6788 -4.1695 1.2682 12 6 1.7621 -5.2837 1.7031 13 6 1.8976 -6.5835 1.3846 14 6 0.8260 -7.2700 2.0006 15 6 0.1001 -6.3487 2.6591 16 8 0.6685 -5.1466 2.4707 17 6 2.6409 -4.1249 -1.1678 18 8 3.4307 -5.0496 -1.1678 19 6 2.1626 -3.5661 -2.4417 20 6 2.5944 -4.0718 -3.5935 21 6 3.5774 -5.2117 -3.7608 22 6 3.7625 -5.4237 -5.2776 23 6 3.3744 -4.0533 -5.8888 24 6 2.1985 -3.6086 -4.9843 25 1 -0.4849 0.8401 -0.0004 26 1 0.6240 -2.5566 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.6866 -3.3879 2.0279 29 1 3.6883 -4.5596 1.1378 30 1 2.6753 -7.0191 0.7750 31 1 0.6287 -8.3307 1.9524 32 1 -0.7916 -6.5422 3.2369 33 1 1.4608 -2.7451 -2.4417 34 1 4.5305 -4.9524 -3.2997 35 1 3.1777 -6.1181 -3.3061 36 1 3.0989 -6.2075 -5.6427 37 1 4.8013 -5.6636 -5.5043 38 1 3.0468 -4.1685 -6.9220 39 1 4.2037 -3.3493 -5.8201 40 1 1.2733 -4.0923 -5.2976 41 1 2.0869 -2.5246 -5.0071 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749380020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:27 Heat of formation + Delta-G solvation = -30.211450 kcal Electronic energy + Delta-G solvation = -23014.464461 eV Core-core repulsion = 19667.309912 eV Total energy + Delta-G solvation = -3347.154549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.47699 -40.85007 -38.78153 -36.79814 -34.73681 -33.91298 -32.94251 -31.53066 -29.69117 -29.12932 -27.58243 -25.73014 -24.78991 -22.61667 -21.91467 -21.63023 -20.75696 -19.00573 -18.69158 -18.26570 -17.82500 -17.32031 -16.66143 -16.54448 -16.27484 -15.91161 -15.46935 -15.04819 -14.52697 -14.33205 -14.11323 -13.93735 -13.73060 -13.58313 -13.53084 -13.37662 -12.94725 -12.85388 -12.70295 -12.47937 -12.29870 -12.04455 -11.96813 -11.81264 -11.76472 -11.44518 -10.87471 -10.72829 -10.52396 -10.08252 -9.59728 -9.38195 -8.21660 -6.37091 0.47648 0.74062 1.41966 1.42635 1.51004 1.66783 2.08905 2.30321 2.47787 2.53713 3.08407 3.48766 3.78258 3.81403 3.95802 4.15200 4.16714 4.19364 4.31620 4.40822 4.51826 4.53287 4.60563 4.72893 4.82629 4.89805 4.93858 5.01490 5.04224 5.12304 5.13315 5.17964 5.21027 5.22894 5.44599 5.49867 5.60871 5.62135 5.68071 5.79467 6.02634 6.23320 6.52510 6.78098 7.28185 7.38281 8.84482 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.008074 B = 0.007643 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3466.903948 B = 3662.800047 C = 6561.545024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.021 3.979 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.259 3.741 10 N -0.595 5.595 11 C 0.197 3.803 12 C -0.046 4.046 13 C -0.200 4.200 14 C -0.224 4.224 15 C -0.042 4.042 16 O -0.194 6.194 17 C 0.548 3.452 18 O -0.580 6.580 19 C -0.230 4.230 20 C -0.039 4.039 21 C -0.088 4.088 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.101 4.101 25 H 0.269 0.731 26 H 0.026 0.974 27 H 0.013 0.987 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.144 0.856 31 H 0.175 0.825 32 H 0.240 0.760 33 H 0.123 0.877 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -10.851 -5.421 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.180 4.180 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.073 0.927 9 C 0.138 3.862 10 N -0.324 5.324 11 C 0.074 3.926 12 C -0.097 4.097 13 C -0.220 4.220 14 C -0.243 4.243 15 C -0.109 4.109 16 O -0.091 6.091 17 C 0.342 3.658 18 O -0.464 6.464 19 C -0.250 4.250 20 C -0.041 4.041 21 C -0.125 4.125 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.138 4.138 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.031 0.969 28 H 0.108 0.892 29 H 0.128 0.872 30 H 0.162 0.838 31 H 0.192 0.808 32 H 0.257 0.743 33 H 0.140 0.860 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.809 -10.899 -5.280 12.432 hybrid contribution 0.031 0.965 0.495 1.085 sum 2.840 -9.933 -4.785 11.386 Atomic orbital electron populations 1.70030 1.07357 1.28329 1.50339 1.25698 0.95600 1.02455 0.94209 0.85579 0.78397 0.78567 0.78992 1.19513 1.20471 1.19615 1.21632 0.93339 0.91436 1.52093 0.92707 1.19040 0.87430 0.82895 0.96845 1.48121 1.45538 1.34085 1.04677 1.19667 0.94505 0.92380 0.86037 1.23071 0.90537 0.97297 0.98759 1.21813 1.02552 0.92945 1.04684 1.22151 0.97110 1.02055 1.02993 1.24896 1.01174 0.80845 1.03961 1.84062 1.34607 1.34557 1.55852 1.18719 0.80342 0.81824 0.84960 1.90616 1.36802 1.30711 1.88245 1.22063 1.06889 1.04714 0.91372 1.23258 0.92494 0.93678 0.94636 1.21249 0.97591 0.96029 0.97659 1.22456 1.02591 0.98013 0.92685 1.22519 0.96928 0.96534 0.99316 1.21686 1.00388 1.01705 0.90044 0.92246 0.95558 0.96928 0.89185 0.87158 0.83773 0.80765 0.74344 0.85965 0.91550 0.91446 0.90150 0.90090 0.88504 0.91305 0.88271 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.26 13.29 21.45 0.28 -51.98 16 2 C 0.02 1.12 5.46 84.65 0.46 1.58 16 3 Si 0.96 42.57 29.54 68.60 2.03 44.60 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -29.59 9.39 25.60 0.24 -29.35 16 8 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 9 C 0.26 13.29 4.88 85.63 0.42 13.71 16 10 N -0.59 -27.10 2.44 -834.79 -2.04 -29.14 16 11 C 0.20 7.97 5.94 85.63 0.51 8.48 16 12 C -0.05 -1.75 6.90 24.83 0.17 -1.58 16 13 C -0.20 -6.92 10.81 22.19 0.24 -6.68 16 14 C -0.22 -6.31 10.91 22.19 0.24 -6.07 16 15 C -0.04 -1.16 12.09 66.97 0.81 -0.35 16 16 O -0.19 -7.25 10.65 -2.47 -0.03 -7.28 16 17 C 0.55 24.40 7.62 86.57 0.66 25.06 16 18 O -0.58 -25.83 13.68 -4.07 -0.06 -25.88 16 19 C -0.23 -9.43 9.13 23.43 0.21 -9.21 16 20 C -0.04 -1.29 6.15 -17.01 -0.10 -1.40 16 21 C -0.09 -2.65 4.81 30.52 0.15 -2.51 16 22 C -0.12 -2.49 6.88 31.71 0.22 -2.27 16 23 C -0.12 -2.26 6.94 31.91 0.22 -2.03 16 24 C -0.10 -2.53 6.64 30.85 0.20 -2.33 16 25 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 26 H 0.03 1.42 6.10 -2.38 -0.01 1.41 16 27 H 0.01 0.70 8.07 -2.39 -0.02 0.68 16 28 H 0.09 3.61 8.07 -2.39 -0.02 3.59 16 29 H 0.11 4.21 7.42 -2.38 -0.02 4.19 16 30 H 0.14 4.98 8.06 -2.91 -0.02 4.96 16 31 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.24 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.12 5.41 6.22 -2.91 -0.02 5.39 16 34 H 0.07 2.22 7.67 -2.39 -0.02 2.20 16 35 H 0.07 2.20 7.68 -2.39 -0.02 2.18 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -65.21 345.84 5.86 -59.35 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 1.02 Total: 25.28 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 4.65 Total: -14.95 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.75 Total: -81.12 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.08 Total: -33.16 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -65.21 5.86 -59.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749380020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.136 kcal (2) G-P(sol) polarization free energy of solvation -65.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds