Wall clock time and date at job start Tue Mar 31 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42897 * 112.85142 * 2 1 4 4 C 1.42906 * 114.00022 * 50.33198 * 3 2 1 5 5 C 1.50696 * 109.47084 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00280 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99622 * 180.02562 * 5 4 3 8 8 C 1.39232 * 119.99749 * 184.03395 * 7 5 4 9 9 C 1.39486 * 119.83507 * 324.49883 * 8 7 5 10 10 C 1.36373 * 120.16955 * 179.72065 * 9 8 7 11 11 C 1.40870 * 119.82617 * 0.57645 * 10 9 8 12 12 C 1.41156 * 120.16445 * 179.68078 * 11 10 9 13 13 H 1.07997 * 119.99929 * 214.80120 * 12 11 10 14 14 C 1.39904 * 120.00136 * 34.79563 * 12 11 10 15 15 N 1.30876 * 119.99759 * 355.56879 * 14 12 11 16 16 Si 1.86798 * 119.99924 * 175.56026 * 14 12 11 17 17 H 1.48495 * 109.46987 * 60.00922 * 16 14 12 18 18 H 1.48501 * 109.46949 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47459 * 300.00052 * 16 14 12 20 20 C 1.40873 * 119.67340 * 359.69512 * 11 10 9 21 21 C 1.36366 * 119.82815 * 0.02562 * 20 11 10 22 22 C 1.53782 * 113.61863 * 131.19784 * 2 1 3 23 23 C 1.53960 * 87.01929 * 89.22725 * 22 2 1 24 24 C 1.53782 * 87.10964 * 25.36523 * 23 22 2 25 25 H 1.08995 * 109.47620 * 69.66524 * 1 2 3 26 26 H 1.09008 * 109.47324 * 189.66529 * 1 2 3 27 27 H 1.09004 * 109.47143 * 309.66295 * 1 2 3 28 28 H 1.08998 * 109.46851 * 60.00230 * 4 3 2 29 29 H 1.08996 * 109.47234 * 300.00460 * 4 3 2 30 30 H 0.97004 * 119.99982 * 4.30751 * 7 5 4 31 31 H 1.08001 * 119.91117 * 0.02562 * 9 8 7 32 32 H 1.07997 * 120.08549 * 180.25583 * 10 9 8 33 33 H 0.97000 * 119.99745 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.08508 * 179.97438 * 20 11 10 35 35 H 1.07998 * 119.91563 * 179.97438 * 21 20 11 36 36 H 1.08997 * 113.61838 * 203.74585 * 22 2 1 37 37 H 1.08999 * 113.61222 * 334.65353 * 22 2 1 38 38 H 1.08998 * 113.53761 * 270.81583 * 23 22 2 39 39 H 1.08997 * 113.74011 * 139.94222 * 23 22 2 40 40 H 1.08998 * 113.61489 * 220.08635 * 24 23 22 41 41 H 1.09003 * 113.61493 * 89.18717 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0848 1.3168 0.0000 4 6 1.5426 2.1761 1.0049 5 6 2.1956 3.5311 0.9129 6 8 3.0415 3.7406 0.0696 7 7 1.8393 4.5102 1.7679 8 6 2.3804 5.7857 1.6302 9 6 3.7015 5.9373 1.2092 10 6 4.2367 7.1835 1.0664 11 6 3.4553 8.3190 1.3570 12 6 4.0041 9.6121 1.2182 13 1 3.7134 10.3980 1.8995 14 6 4.9247 9.8755 0.1982 15 7 5.3429 8.9041 -0.5727 16 14 5.5567 11.6138 -0.0635 17 1 6.2421 12.0818 1.1678 18 1 6.5140 11.6267 -1.1987 19 1 4.4162 12.5145 -0.3682 20 6 2.1236 8.1577 1.7872 21 6 1.6006 6.9053 1.9197 22 6 2.1460 -0.9281 1.0602 23 6 2.0950 -2.0420 -0.0014 24 6 2.1459 -0.9280 -1.0603 25 1 -0.3634 0.3571 -0.9635 26 1 -0.3634 -1.0131 0.1725 27 1 -0.3634 0.6559 0.7911 28 1 1.7309 1.7477 1.9894 29 1 0.4683 2.2798 0.8533 30 1 1.2090 4.3252 2.4817 31 1 4.3006 5.0655 0.9910 32 1 5.2584 7.2994 0.7364 33 1 5.9809 9.0868 -1.2802 34 1 1.5187 9.0237 2.0122 35 1 0.5799 6.7800 2.2498 36 1 3.1585 -0.6478 1.3506 37 1 1.4940 -1.1080 1.9149 38 1 1.1594 -2.6013 -0.0007 39 1 2.9737 -2.6868 -0.0034 40 1 1.4939 -1.1079 -1.9150 41 1 3.1585 -0.6477 -1.3508 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772971915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:48 Heat of formation + Delta-G solvation = -36.667543 kcal Electronic energy + Delta-G solvation = -22164.843197 eV Core-core repulsion = 18817.408691 eV Total energy + Delta-G solvation = -3347.434506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.21505 -39.36982 -37.26940 -35.80148 -34.36440 -32.88387 -29.66939 -29.36333 -29.30042 -27.78781 -25.94103 -24.71888 -23.35709 -21.47250 -20.94809 -19.57939 -19.01508 -17.35619 -17.27224 -17.03402 -15.90109 -15.88490 -15.24017 -15.17728 -14.76072 -14.18542 -13.91264 -13.54256 -13.39456 -12.94941 -12.66665 -12.57792 -12.39116 -12.08505 -12.05186 -11.70572 -11.53285 -11.43061 -11.31738 -11.12032 -10.98953 -10.91439 -10.47347 -10.43420 -9.89372 -9.86352 -9.57729 -9.38583 -8.96410 -8.69717 -7.49796 -6.87060 -6.56375 -4.30755 2.59614 3.03258 3.09313 3.11866 3.12776 3.14846 3.39530 4.00799 4.08393 4.31066 4.35101 4.53126 4.56251 4.74541 4.96494 5.09808 5.14223 5.19336 5.23011 5.40922 5.47468 5.57013 5.60932 5.68782 5.71535 5.78407 5.96943 6.12596 6.15014 6.40755 6.81045 6.98287 7.06357 7.12596 7.24409 7.32061 7.66275 7.71054 8.00080 8.11597 8.22136 8.36153 8.69668 8.79531 8.95925 9.04064 10.34461 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035540 B = 0.002872 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.660435 B = 9746.643542 C =10251.765877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 O -0.342 6.342 4 C 0.045 3.955 5 C 0.497 3.503 6 O -0.506 6.506 7 N -0.653 5.653 8 C 0.006 3.994 9 C -0.094 4.094 10 C -0.144 4.144 11 C 0.100 3.900 12 C -0.463 4.463 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.807 5.807 16 Si 0.916 3.084 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.205 4.205 21 C -0.113 4.113 22 C -0.162 4.162 23 C -0.139 4.139 24 C -0.120 4.120 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.394 0.606 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.279 0.721 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.493 -17.208 3.369 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 O -0.260 6.260 4 C -0.035 4.035 5 C 0.282 3.718 6 O -0.380 6.380 7 N -0.298 5.298 8 C -0.086 4.086 9 C -0.114 4.114 10 C -0.164 4.164 11 C 0.098 3.902 12 C -0.494 4.494 13 H 0.093 0.907 14 C -0.147 4.147 15 N -0.434 5.434 16 Si 0.741 3.259 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.192 1.192 20 C -0.225 4.225 21 C -0.133 4.133 22 C -0.200 4.200 23 C -0.177 4.177 24 C -0.157 4.157 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.227 0.773 31 H 0.125 0.875 32 H 0.149 0.851 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.578 -17.069 2.384 18.827 hybrid contribution -0.386 0.613 0.306 0.787 sum -7.964 -16.455 2.690 18.478 Atomic orbital electron populations 1.22113 0.93862 1.02908 1.03188 1.23100 0.92988 0.82060 0.97736 1.88135 1.62707 1.21442 1.53667 1.22170 0.98133 0.90093 0.93128 1.20206 0.84065 0.85539 0.81994 1.90741 1.30793 1.81255 1.35171 1.42850 1.46348 1.09501 1.31138 1.17255 0.94035 0.81876 1.15468 1.20659 0.92872 0.97930 0.99899 1.21308 1.01048 0.90470 1.03552 1.17729 0.90133 0.93587 0.88793 1.19445 1.21161 0.96102 1.12714 0.90672 1.25900 0.94515 0.99090 0.95181 1.69784 1.25344 1.32871 1.15382 0.86250 0.79004 0.82150 0.78512 1.19078 1.20429 1.19155 1.20685 0.95949 0.94719 1.11114 1.20062 0.96871 0.92274 1.04084 1.23635 1.02326 0.96716 0.97323 1.22715 1.02371 0.96080 0.96517 1.23060 1.02454 0.93705 0.96486 0.91217 0.91031 0.91634 0.90840 0.90466 0.77255 0.87511 0.85140 0.90994 0.88512 0.89134 0.89112 0.91277 0.90019 0.90754 0.90742 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.80 37.15 0.33 -1.03 16 2 C 0.08 0.86 1.39 -89.81 -0.12 0.74 16 3 O -0.34 -5.15 9.83 -55.14 -0.54 -5.69 16 4 C 0.04 0.59 5.79 36.00 0.21 0.80 16 5 C 0.50 9.21 7.73 -10.98 -0.08 9.12 16 6 O -0.51 -12.10 13.94 -14.35 -0.20 -12.30 16 7 N -0.65 -11.57 5.30 -9.74 -0.05 -11.62 16 8 C 0.01 0.13 6.30 -83.57 -0.53 -0.40 16 9 C -0.09 -2.39 8.61 -39.79 -0.34 -2.74 16 10 C -0.14 -3.94 8.61 -39.26 -0.34 -4.28 16 11 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 12 C -0.46 -12.51 9.02 -37.85 -0.34 -12.85 16 13 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 14 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 15 N -0.81 -21.92 10.60 55.55 0.59 -21.33 16 16 Si 0.92 19.37 29.56 -169.99 -5.03 14.34 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 C -0.20 -4.99 9.74 -39.26 -0.38 -5.38 16 21 C -0.11 -2.48 9.90 -39.79 -0.39 -2.87 16 22 C -0.16 -1.46 7.33 -25.82 -0.19 -1.65 16 23 C -0.14 -1.06 7.74 -25.82 -0.20 -1.26 16 24 C -0.12 -1.15 7.50 -25.92 -0.19 -1.35 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.46 7.34 -51.92 -0.38 0.08 16 27 H 0.06 0.50 6.27 -51.93 -0.33 0.17 16 28 H 0.07 0.77 8.06 -51.93 -0.42 0.36 16 29 H 0.08 0.83 6.39 -51.93 -0.33 0.50 16 30 H 0.39 5.17 8.82 -40.82 -0.36 4.81 16 31 H 0.11 2.77 6.25 -52.49 -0.33 2.44 16 32 H 0.13 3.74 6.13 -52.49 -0.32 3.42 16 33 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 34 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 35 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 38 H 0.08 0.50 7.64 -51.93 -0.40 0.11 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.64 8.10 -51.93 -0.42 0.21 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -32.57 337.91 -9.20 -41.77 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -5.79 Total: 9.06 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -3.27 Total: -19.32 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.54 Total: -32.96 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.74 Total: -17.99 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.57 -9.20 -41.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772971915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.100 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds