Wall clock time and date at job start Tue Mar 31 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42897 * 112.85142 * 2 1 4 4 C 1.42906 * 114.00022 * 50.33198 * 3 2 1 5 5 C 1.50696 * 109.47084 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00280 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99622 * 180.02562 * 5 4 3 8 8 C 1.39232 * 119.99749 * 184.03395 * 7 5 4 9 9 C 1.39486 * 119.83507 * 324.49883 * 8 7 5 10 10 C 1.36373 * 120.16955 * 179.72065 * 9 8 7 11 11 C 1.40870 * 119.82617 * 0.57645 * 10 9 8 12 12 C 1.41156 * 120.16445 * 179.68078 * 11 10 9 13 13 H 1.07997 * 119.99929 * 214.80120 * 12 11 10 14 14 C 1.39904 * 120.00136 * 34.79563 * 12 11 10 15 15 N 1.30876 * 119.99759 * 355.56879 * 14 12 11 16 16 Si 1.86798 * 119.99924 * 175.56026 * 14 12 11 17 17 H 1.48495 * 109.46987 * 60.00922 * 16 14 12 18 18 H 1.48501 * 109.46949 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47459 * 300.00052 * 16 14 12 20 20 C 1.40873 * 119.67340 * 359.69512 * 11 10 9 21 21 C 1.36366 * 119.82815 * 0.02562 * 20 11 10 22 22 C 1.53782 * 113.61863 * 131.19784 * 2 1 3 23 23 C 1.53960 * 87.01929 * 89.22725 * 22 2 1 24 24 C 1.53782 * 87.10964 * 25.36523 * 23 22 2 25 25 H 1.08995 * 109.47620 * 69.66524 * 1 2 3 26 26 H 1.09008 * 109.47324 * 189.66529 * 1 2 3 27 27 H 1.09004 * 109.47143 * 309.66295 * 1 2 3 28 28 H 1.08998 * 109.46851 * 60.00230 * 4 3 2 29 29 H 1.08996 * 109.47234 * 300.00460 * 4 3 2 30 30 H 0.97004 * 119.99982 * 4.30751 * 7 5 4 31 31 H 1.08001 * 119.91117 * 0.02562 * 9 8 7 32 32 H 1.07997 * 120.08549 * 180.25583 * 10 9 8 33 33 H 0.97000 * 119.99745 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.08508 * 179.97438 * 20 11 10 35 35 H 1.07998 * 119.91563 * 179.97438 * 21 20 11 36 36 H 1.08997 * 113.61838 * 203.74585 * 22 2 1 37 37 H 1.08999 * 113.61222 * 334.65353 * 22 2 1 38 38 H 1.08998 * 113.53761 * 270.81583 * 23 22 2 39 39 H 1.08997 * 113.74011 * 139.94222 * 23 22 2 40 40 H 1.08998 * 113.61489 * 220.08635 * 24 23 22 41 41 H 1.09003 * 113.61493 * 89.18717 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0848 1.3168 0.0000 4 6 1.5426 2.1761 1.0049 5 6 2.1956 3.5311 0.9129 6 8 3.0415 3.7406 0.0696 7 7 1.8393 4.5102 1.7679 8 6 2.3804 5.7857 1.6302 9 6 3.7015 5.9373 1.2092 10 6 4.2367 7.1835 1.0664 11 6 3.4553 8.3190 1.3570 12 6 4.0041 9.6121 1.2182 13 1 3.7134 10.3980 1.8995 14 6 4.9247 9.8755 0.1982 15 7 5.3429 8.9041 -0.5727 16 14 5.5567 11.6138 -0.0635 17 1 6.2421 12.0818 1.1678 18 1 6.5140 11.6267 -1.1987 19 1 4.4162 12.5145 -0.3682 20 6 2.1236 8.1577 1.7872 21 6 1.6006 6.9053 1.9197 22 6 2.1460 -0.9281 1.0602 23 6 2.0950 -2.0420 -0.0014 24 6 2.1459 -0.9280 -1.0603 25 1 -0.3634 0.3571 -0.9635 26 1 -0.3634 -1.0131 0.1725 27 1 -0.3634 0.6559 0.7911 28 1 1.7309 1.7477 1.9894 29 1 0.4683 2.2798 0.8533 30 1 1.2090 4.3252 2.4817 31 1 4.3006 5.0655 0.9910 32 1 5.2584 7.2994 0.7364 33 1 5.9809 9.0868 -1.2802 34 1 1.5187 9.0237 2.0122 35 1 0.5799 6.7800 2.2498 36 1 3.1585 -0.6478 1.3506 37 1 1.4940 -1.1080 1.9149 38 1 1.1594 -2.6013 -0.0007 39 1 2.9737 -2.6868 -0.0034 40 1 1.4939 -1.1079 -1.9150 41 1 3.1585 -0.6477 -1.3508 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772971915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:47 Heat of formation + Delta-G solvation = -56.496552 kcal Electronic energy + Delta-G solvation = -22165.703048 eV Core-core repulsion = 18817.408691 eV Total energy + Delta-G solvation = -3348.294356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.37902 -40.61603 -39.04381 -36.84488 -36.12676 -34.71882 -31.53251 -31.12655 -30.00186 -29.18457 -26.76531 -26.40387 -24.16532 -23.27513 -22.74260 -21.21102 -19.81154 -19.23666 -18.65213 -18.24653 -17.28993 -17.13395 -16.87604 -16.12778 -15.93009 -15.74272 -15.39576 -14.80011 -14.65117 -14.39433 -14.29739 -13.95355 -13.63764 -13.35863 -13.33003 -13.06301 -12.88626 -12.81837 -12.69158 -12.31656 -12.19321 -12.11044 -11.77593 -11.70733 -11.70017 -11.21174 -11.11881 -10.75281 -10.46347 -10.42627 -9.46168 -8.76621 -8.49757 -6.33635 0.79282 1.12399 1.38339 1.45277 1.51654 1.73067 1.94801 2.23574 2.80845 3.05296 3.55819 3.63210 3.67698 3.78412 3.86852 3.92585 4.14370 4.27987 4.41273 4.44332 4.47563 4.61003 4.75578 4.85388 4.86954 4.98639 5.01853 5.05781 5.11229 5.14380 5.15992 5.27590 5.33688 5.41243 5.47149 5.70462 5.85440 6.06947 6.13772 6.23868 6.35644 6.70158 6.71936 6.95270 7.01752 7.39415 8.42933 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035540 B = 0.002872 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.660435 B = 9746.643542 C =10251.765877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.068 3.932 3 O -0.384 6.384 4 C 0.056 3.944 5 C 0.491 3.509 6 O -0.569 6.569 7 N -0.639 5.639 8 C 0.019 3.981 9 C -0.111 4.111 10 C -0.170 4.170 11 C 0.065 3.935 12 C -0.496 4.496 13 H 0.082 0.918 14 C 0.020 3.980 15 N -0.848 5.848 16 Si 0.992 3.008 17 H -0.256 1.256 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.210 4.210 21 C -0.104 4.104 22 C -0.161 4.161 23 C -0.125 4.125 24 C -0.132 4.132 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.422 0.578 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.282 0.718 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.475 -18.299 4.779 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 O -0.304 6.304 4 C -0.023 4.023 5 C 0.279 3.721 6 O -0.447 6.447 7 N -0.287 5.287 8 C -0.075 4.075 9 C -0.131 4.131 10 C -0.190 4.190 11 C 0.063 3.937 12 C -0.527 4.527 13 H 0.100 0.900 14 C -0.191 4.191 15 N -0.476 5.476 16 Si 0.813 3.187 17 H -0.181 1.181 18 H -0.199 1.199 19 H -0.182 1.182 20 C -0.229 4.229 21 C -0.124 4.124 22 C -0.198 4.198 23 C -0.162 4.162 24 C -0.170 4.170 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.260 0.740 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.133 0.867 35 H 0.159 0.841 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.612 -18.199 3.846 21.415 hybrid contribution 0.472 0.767 -0.116 0.908 sum -10.140 -17.432 3.730 20.509 Atomic orbital electron populations 1.22130 0.91666 1.04699 1.03263 1.23514 0.94657 0.80206 0.98704 1.88096 1.64205 1.23513 1.54561 1.22180 0.98895 0.86671 0.94524 1.21307 0.82900 0.87315 0.80549 1.90727 1.33652 1.82538 1.37760 1.42723 1.46268 1.07661 1.32005 1.17338 0.92795 0.84470 1.12848 1.20661 0.94679 0.96660 1.01091 1.21166 1.00417 0.91793 1.05626 1.18078 0.91738 0.93658 0.90213 1.19759 1.22694 0.96421 1.13807 0.90003 1.26895 0.94248 1.03565 0.94385 1.69922 1.26262 1.35255 1.16190 0.85098 0.78518 0.76384 0.78707 1.18053 1.19922 1.18247 1.20986 0.95011 0.96665 1.10276 1.20454 0.98783 0.90809 1.02332 1.23598 1.01607 0.96610 0.98022 1.22717 1.03800 0.95343 0.94390 1.23142 1.01332 0.94960 0.97534 0.91936 0.88681 0.90477 0.87398 0.87026 0.73963 0.89047 0.87885 0.90782 0.86650 0.84143 0.90971 0.89109 0.87651 0.90329 0.89877 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.80 71.98 0.63 -1.47 16 2 C 0.07 1.32 1.39 -10.27 -0.01 1.30 16 3 O -0.38 -11.26 9.83 -129.94 -1.28 -12.54 16 4 C 0.06 1.34 5.79 71.23 0.41 1.76 16 5 C 0.49 17.73 7.73 87.65 0.68 18.41 16 6 O -0.57 -28.08 13.94 16.02 0.22 -27.86 16 7 N -0.64 -21.21 5.30 -303.11 -1.61 -22.82 16 8 C 0.02 0.84 6.30 38.57 0.24 1.08 16 9 C -0.11 -5.90 8.61 22.14 0.19 -5.71 16 10 C -0.17 -9.85 8.61 22.48 0.19 -9.66 16 11 C 0.07 3.67 5.55 -21.27 -0.12 3.56 16 12 C -0.50 -27.59 9.02 23.39 0.21 -27.38 16 13 H 0.08 4.26 7.85 -2.91 -0.02 4.23 16 14 C 0.02 1.08 5.42 85.24 0.46 1.55 16 15 N -0.85 -48.53 10.60 21.82 0.23 -48.30 16 16 Si 0.99 40.45 29.56 68.60 2.03 42.47 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 20 C -0.21 -10.07 9.74 22.48 0.22 -9.85 16 21 C -0.10 -4.32 9.90 22.13 0.22 -4.10 16 22 C -0.16 -2.51 7.33 31.18 0.23 -2.28 16 23 C -0.13 -1.60 7.74 31.18 0.24 -1.36 16 24 C -0.13 -2.45 7.50 31.12 0.23 -2.21 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.09 0.80 7.34 -2.38 -0.02 0.78 16 27 H 0.08 0.82 6.27 -2.38 -0.01 0.80 16 28 H 0.11 1.85 8.06 -2.39 -0.02 1.83 16 29 H 0.11 1.91 6.39 -2.39 -0.02 1.89 16 30 H 0.42 9.32 8.82 -92.71 -0.82 8.51 16 31 H 0.09 5.07 6.25 -2.91 -0.02 5.05 16 32 H 0.10 6.42 6.13 -2.91 -0.02 6.41 16 33 H 0.28 14.85 8.30 -92.71 -0.77 14.08 16 34 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 35 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.02 8.10 -2.39 -0.02 1.00 16 38 H 0.11 0.88 7.64 -2.39 -0.02 0.86 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -77.09 337.91 3.86 -73.24 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.23 Total: 32.19 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 4.03 Total: -36.37 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -1.38 Total: -71.12 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -1.05 Total: -40.40 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Total: -77.09 3.86 -73.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772971915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.739 kcal (2) G-P(sol) polarization free energy of solvation -77.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds