Wall clock time and date at job start Tue Mar 31 2020 07:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 110.80554 * 2 1 4 4 C 1.34770 * 120.00102 * 300.70121 * 3 2 1 5 5 O 1.21290 * 120.00237 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00119 * 179.97438 * 4 3 2 7 7 C 1.50702 * 109.47387 * 179.97438 * 6 4 3 8 8 C 1.37635 * 120.13111 * 265.00362 * 7 6 4 9 9 C 1.38613 * 120.24656 * 179.97438 * 8 7 6 10 10 C 1.38658 * 120.50331 * 359.97438 * 9 8 7 11 11 C 1.37596 * 120.24792 * 359.97438 * 10 9 8 12 12 C 1.40703 * 120.12413 * 84.98124 * 7 6 4 13 13 C 1.41397 * 120.24190 * 0.02562 * 12 7 6 14 14 H 1.07999 * 120.00181 * 334.58262 * 13 12 7 15 15 C 1.39947 * 119.99696 * 154.57637 * 13 12 7 16 16 N 1.30828 * 120.00154 * 342.84888 * 15 13 12 17 17 Si 1.86803 * 120.00025 * 162.83996 * 15 13 12 18 18 H 1.48504 * 109.46775 * 94.65337 * 17 15 13 19 19 H 1.48500 * 109.47122 * 214.65250 * 17 15 13 20 20 H 1.48501 * 109.46873 * 334.65324 * 17 15 13 21 21 C 1.54816 * 110.90907 * 123.63081 * 2 1 3 22 22 C 1.54190 * 104.14442 * 139.10320 * 21 2 1 23 23 O 1.43745 * 107.30598 * 2.02514 * 22 21 2 24 24 C 1.44382 * 106.97182 * 333.48816 * 23 22 21 25 25 H 1.09009 * 109.47303 * 59.30023 * 1 2 3 26 26 H 1.09005 * 109.47232 * 179.29241 * 1 2 3 27 27 H 1.08995 * 109.47571 * 299.30098 * 1 2 3 28 28 H 0.97000 * 119.99513 * 120.70332 * 3 2 1 29 29 H 1.09001 * 109.46856 * 60.00449 * 6 4 3 30 30 H 1.08994 * 109.47488 * 300.00423 * 6 4 3 31 31 H 1.07996 * 119.87413 * 359.97438 * 8 7 6 32 32 H 1.08003 * 119.74862 * 179.97438 * 9 8 7 33 33 H 1.08002 * 119.87142 * 179.71890 * 10 9 8 34 34 H 1.07998 * 120.12812 * 179.97438 * 11 10 9 35 35 H 0.96993 * 119.99971 * 179.97438 * 16 15 13 36 36 H 1.09002 * 110.48752 * 257.79017 * 21 2 1 37 37 H 1.09003 * 110.48246 * 20.43655 * 21 2 1 38 38 H 1.08997 * 109.87134 * 242.59843 * 22 21 2 39 39 H 1.08996 * 110.00257 * 121.52077 * 22 21 2 40 40 H 1.08998 * 110.62145 * 281.56159 * 24 23 22 41 41 H 1.09004 * 110.61512 * 158.56084 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0503 1.3695 0.0000 4 6 1.7326 2.2111 -1.0035 5 8 1.0163 1.8346 -1.9070 6 6 2.2674 3.6200 -1.0032 7 6 1.7684 4.3471 -2.2253 8 6 2.5445 4.4036 -3.3606 9 6 2.0876 5.0713 -4.4861 10 6 0.8460 5.6885 -4.4828 11 6 0.0528 5.6439 -3.3593 12 6 0.5070 4.9703 -2.2102 13 6 -0.2989 4.9188 -1.0496 14 1 -0.1800 4.1090 -0.3450 15 6 -1.2507 5.9174 -0.8138 16 7 -1.1798 7.0539 -1.4579 17 14 -2.6225 5.6274 0.4205 18 1 -2.2252 6.1790 1.7408 19 1 -3.8596 6.3033 -0.0464 20 1 -2.8733 4.1693 0.5484 21 6 2.0824 -0.8010 1.2041 22 6 3.2727 -1.5876 0.6192 23 8 3.3944 -1.2135 -0.7633 24 6 2.0831 -0.8019 -1.2056 25 1 -0.3634 0.5247 -0.8837 26 1 -0.3634 -1.0276 -0.0127 27 1 -0.3634 0.5029 0.8961 28 1 2.6235 1.6704 0.7223 29 1 3.3571 3.5949 -1.0156 30 1 1.9261 4.1380 -0.1071 31 1 3.5130 3.9260 -3.3745 32 1 2.7034 5.1110 -5.3725 33 1 0.5020 6.2098 -5.3639 34 1 -0.9138 6.1256 -3.3587 35 1 -1.8396 7.7458 -1.2947 36 1 2.4203 -0.1247 1.9894 37 1 1.3247 -1.4843 1.5877 38 1 3.0839 -2.6581 0.6983 39 1 4.1873 -1.3321 1.1542 40 1 1.4565 -1.6703 -1.4090 41 1 2.1576 -0.1660 -2.0878 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777061689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:44 Heat of formation + Delta-G solvation = -68.923534 kcal Electronic energy + Delta-G solvation = -23467.964798 eV Core-core repulsion = 20119.131567 eV Total energy + Delta-G solvation = -3348.833231 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31268 -38.50289 -37.17946 -34.55580 -33.59139 -32.03348 -31.01282 -29.71292 -29.39576 -26.70223 -26.19918 -24.94811 -22.91670 -21.25460 -20.87579 -19.64485 -19.17553 -17.21085 -16.92218 -16.18407 -15.85803 -15.54331 -15.39112 -14.56783 -14.52690 -14.18709 -13.64560 -13.39675 -13.12547 -13.04792 -12.71894 -12.55551 -12.12666 -11.93084 -11.69811 -11.60243 -11.54009 -11.30158 -11.13606 -11.00458 -10.94294 -10.73620 -10.66051 -10.37410 -9.76071 -9.44312 -9.34606 -9.12519 -9.00151 -8.65796 -7.27493 -7.25403 -6.71619 -4.30721 2.80593 2.99913 3.07443 3.12486 3.29413 3.34364 3.60406 3.92466 3.94945 4.30318 4.68822 4.74222 4.80433 4.95907 5.29362 5.39784 5.51760 5.56525 5.64542 5.72280 5.76183 5.85064 5.94563 6.04390 6.06675 6.19330 6.33395 6.45494 6.47857 6.55578 6.76889 6.84480 6.91505 7.11479 7.33518 7.46216 7.67818 7.92505 8.00187 8.11207 8.17349 8.35194 8.68245 8.89347 8.95031 9.05394 10.22732 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.005605 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.037495 B = 4994.631588 C = 6312.498826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.147 3.853 3 N -0.730 5.730 4 C 0.519 3.481 5 O -0.518 6.518 6 C -0.071 4.071 7 C -0.180 4.180 8 C -0.081 4.081 9 C -0.240 4.240 10 C -0.107 4.107 11 C -0.160 4.160 12 C 0.130 3.870 13 C -0.456 4.456 14 H 0.074 0.926 15 C 0.077 3.923 16 N -0.795 5.795 17 Si 0.900 3.100 18 H -0.271 1.271 19 H -0.275 1.275 20 H -0.262 1.262 21 C -0.158 4.158 22 C 0.046 3.954 23 O -0.376 6.376 24 C 0.042 3.958 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.396 0.604 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.279 0.721 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 -11.417 7.510 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.060 3.940 3 N -0.385 5.385 4 C 0.307 3.693 5 O -0.392 6.392 6 C -0.111 4.111 7 C -0.182 4.182 8 C -0.099 4.099 9 C -0.259 4.259 10 C -0.125 4.125 11 C -0.180 4.180 12 C 0.127 3.873 13 C -0.485 4.485 14 H 0.092 0.908 15 C -0.140 4.140 16 N -0.420 5.420 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.200 1.200 20 H -0.185 1.185 21 C -0.196 4.196 22 C -0.031 4.031 23 O -0.295 6.295 24 C -0.036 4.036 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.230 0.770 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.018 -11.453 6.696 13.861 hybrid contribution -0.589 0.102 1.117 1.267 sum 3.429 -11.350 7.813 14.200 Atomic orbital electron populations 1.22090 0.92998 1.02075 1.04533 1.21640 0.94755 0.83114 0.94463 1.46126 1.53742 1.11291 1.27308 1.21201 0.79909 0.87455 0.80719 1.90633 1.35690 1.77206 1.35662 1.20269 0.99475 0.90787 1.00566 1.19037 0.96389 1.08682 0.94071 1.20304 0.97487 0.98672 0.93447 1.20301 0.98585 1.09034 0.97972 1.20669 0.95066 0.99555 0.97247 1.21275 1.00135 1.04366 0.92193 1.17323 0.89256 0.88442 0.92263 1.19453 1.15540 1.07564 1.05982 0.90817 1.25872 0.97704 0.94108 0.96306 1.69827 1.32122 1.03435 1.36650 0.86428 0.80660 0.79873 0.80545 1.19682 1.20050 1.18542 1.23289 0.98629 0.99589 0.98092 1.23148 0.98385 0.98172 0.83409 1.88903 1.29720 1.86266 1.24565 1.24022 0.83608 0.97442 0.98496 0.89350 0.92158 0.92183 0.76978 0.90658 0.88673 0.89781 0.89717 0.89646 0.86628 0.91018 0.89840 0.89383 0.92522 0.90004 0.91668 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.45 37.15 0.31 -1.88 16 2 C 0.15 1.94 0.93 -129.81 -0.12 1.82 16 3 N -0.73 -10.61 5.18 -45.75 -0.24 -10.85 16 4 C 0.52 9.86 6.84 -10.99 -0.08 9.78 16 5 O -0.52 -11.74 12.82 5.55 0.07 -11.67 16 6 C -0.07 -1.39 5.18 -29.03 -0.15 -1.54 16 7 C -0.18 -4.33 4.43 -103.91 -0.46 -4.79 16 8 C -0.08 -1.89 9.66 -39.66 -0.38 -2.27 16 9 C -0.24 -5.65 10.05 -39.29 -0.39 -6.04 16 10 C -0.11 -2.63 10.02 -39.66 -0.40 -3.03 16 11 C -0.16 -4.30 8.69 -38.88 -0.34 -4.64 16 12 C 0.13 3.46 5.56 -106.82 -0.59 2.86 16 13 C -0.46 -11.91 8.15 -37.74 -0.31 -12.21 16 14 H 0.07 1.87 6.66 -52.49 -0.35 1.52 16 15 C 0.08 1.94 5.15 -17.34 -0.09 1.85 16 16 N -0.79 -20.53 10.98 55.55 0.61 -19.92 16 17 Si 0.90 18.77 29.59 -169.99 -5.03 13.74 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 21 C -0.16 -1.49 6.30 -25.15 -0.16 -1.65 16 22 C 0.05 0.46 7.70 37.78 0.29 0.75 16 23 O -0.38 -5.29 11.52 -35.23 -0.41 -5.69 16 24 C 0.04 0.59 6.59 38.21 0.25 0.85 16 25 H 0.09 1.55 6.22 -51.92 -0.32 1.23 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.40 4.63 8.29 -40.82 -0.34 4.29 16 29 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 30 H 0.10 1.83 7.05 -51.93 -0.37 1.46 16 31 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.08 1.78 8.06 -52.48 -0.42 1.35 16 33 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 34 H 0.12 3.19 6.21 -52.49 -0.33 2.86 16 35 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 36 H 0.08 0.68 7.76 -51.93 -0.40 0.27 16 37 H 0.09 0.70 7.86 -51.93 -0.41 0.29 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 41 H 0.11 1.86 6.58 -51.93 -0.34 1.51 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -30.57 332.89 -8.37 -38.94 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.79 Total: 10.59 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.61 Total: -20.15 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.37 Total: -30.77 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.33 Total: -17.37 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.57 -8.37 -38.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777061689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.981 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds