Wall clock time and date at job start Tue Mar 31 2020 07:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 110.64103 * 2 1 4 4 C 1.55158 * 110.72371 * 236.65954 * 2 1 3 5 5 C 1.55117 * 101.48739 * 205.97039 * 4 2 1 6 6 N 1.47425 * 104.72728 * 37.29529 * 5 4 2 7 7 C 1.34778 * 125.65168 * 155.81324 * 6 5 4 8 8 O 1.21271 * 119.99943 * 179.69427 * 7 6 5 9 9 C 1.50701 * 119.99895 * 359.69770 * 7 6 5 10 10 C 1.50696 * 109.47141 * 179.97438 * 9 7 6 11 11 C 1.37633 * 120.12998 * 265.00262 * 10 9 7 12 12 C 1.38613 * 120.24915 * 179.97438 * 11 10 9 13 13 C 1.38660 * 120.50327 * 0.02562 * 12 11 10 14 14 C 1.37604 * 120.24610 * 0.02562 * 13 12 11 15 15 C 1.40702 * 120.12565 * 84.72420 * 10 9 7 16 16 C 1.41396 * 120.24376 * 359.97438 * 15 10 9 17 17 H 1.08002 * 120.00172 * 333.90404 * 16 15 10 18 18 C 1.39949 * 120.00071 * 153.89160 * 16 15 10 19 19 N 1.30824 * 120.00017 * 343.71687 * 18 16 15 20 20 Si 1.86802 * 119.99949 * 163.70982 * 18 16 15 21 21 H 1.48507 * 109.46775 * 90.00559 * 20 18 16 22 22 H 1.48495 * 109.47004 * 210.00494 * 20 18 16 23 23 H 1.48499 * 109.47118 * 330.00659 * 20 18 16 24 24 C 1.47023 * 108.69966 * 335.55681 * 6 5 4 25 25 H 1.08994 * 109.47379 * 296.85791 * 1 2 3 26 26 H 1.08998 * 109.47441 * 56.86465 * 1 2 3 27 27 H 1.09007 * 109.46620 * 176.85901 * 1 2 3 28 28 H 0.96704 * 113.99603 * 303.14049 * 3 2 1 29 29 H 1.09003 * 111.00037 * 324.21177 * 4 2 1 30 30 H 1.08997 * 111.00071 * 88.01994 * 4 2 1 31 31 H 1.09004 * 110.49804 * 278.45319 * 5 4 2 32 32 H 1.09007 * 110.34322 * 156.06515 * 5 4 2 33 33 H 1.09002 * 109.47039 * 59.99746 * 9 7 6 34 34 H 1.09001 * 109.47223 * 299.99756 * 9 7 6 35 35 H 1.08002 * 119.87951 * 359.97438 * 11 10 9 36 36 H 1.08003 * 119.75262 * 179.97438 * 12 11 10 37 37 H 1.07993 * 119.87738 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.12922 * 179.97438 * 14 13 12 39 39 H 0.96993 * 119.99888 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.88449 * 120.69890 * 24 6 5 41 41 H 1.09007 * 109.87836 * 241.71183 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0337 1.3372 0.0000 4 6 2.0790 -0.7976 -1.2123 5 6 3.4665 -1.2467 -0.6839 6 7 3.2445 -1.5494 0.7418 7 6 3.9923 -2.3810 1.4940 8 8 3.7194 -2.5514 2.6633 9 6 5.1675 -3.0990 0.8820 10 6 5.8302 -3.9592 1.9269 11 6 6.9107 -3.4804 2.6323 12 6 7.5217 -4.2694 3.5943 13 6 7.0538 -5.5479 3.8571 14 6 5.9756 -6.0476 3.1634 15 6 5.3430 -5.2529 2.1893 16 6 4.2297 -5.7530 1.4754 17 1 3.5030 -5.0701 1.0606 18 6 4.0694 -7.1329 1.3060 19 7 5.0783 -7.9391 1.5149 20 14 2.4149 -7.8237 0.7818 21 1 2.3515 -7.8854 -0.7007 22 1 2.2487 -9.1890 1.3416 23 1 1.3292 -6.9457 1.2875 24 6 2.0760 -0.7891 1.2087 25 1 -0.3634 0.4642 0.9167 26 1 -0.3634 0.5617 -0.8605 27 1 -0.3633 -1.0262 -0.0563 28 1 1.7204 1.8755 -0.7398 29 1 1.4452 -1.6561 -1.4345 30 1 2.1844 -0.1556 -2.0869 31 1 4.1947 -0.4428 -0.7920 32 1 3.8032 -2.1382 -1.2131 33 1 5.8837 -2.3685 0.5057 34 1 4.8223 -3.7262 0.0601 35 1 7.2839 -2.4862 2.4356 36 1 8.3694 -3.8858 4.1428 37 1 7.5378 -6.1540 4.6085 38 1 5.6129 -7.0438 3.3693 39 1 4.9672 -8.8955 1.3978 40 1 1.3129 -1.4731 1.5801 41 1 2.3735 -0.1009 1.9999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777410215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:21 Heat of formation + Delta-G solvation = -68.994797 kcal Electronic energy + Delta-G solvation = -23207.675533 eV Core-core repulsion = 19858.839212 eV Total energy + Delta-G solvation = -3348.836321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.01241 -38.33087 -37.09507 -35.22443 -33.57740 -31.97895 -31.28707 -29.64838 -29.40529 -27.59333 -25.84139 -24.78224 -23.01464 -20.90824 -20.76322 -19.95037 -18.68435 -17.14918 -16.92492 -16.43497 -16.00387 -15.32188 -15.03647 -14.48964 -14.44895 -14.07888 -13.59753 -13.43653 -13.37431 -12.92455 -12.61740 -12.47189 -12.37524 -12.20322 -11.77633 -11.66307 -11.54849 -11.50623 -11.11940 -10.98065 -10.92652 -10.86862 -10.65578 -10.36231 -10.13955 -9.43471 -9.32857 -9.13443 -9.09903 -8.28844 -7.25900 -7.24113 -6.69526 -4.29740 2.81222 2.98796 3.08060 3.13561 3.30526 3.36874 3.44412 3.91063 3.96451 4.28889 4.46321 4.63733 4.70458 5.08791 5.16411 5.28611 5.47823 5.50534 5.63671 5.65859 5.78226 5.81986 5.86202 5.88967 6.00467 6.06566 6.15696 6.34145 6.47869 6.56024 6.64610 6.85617 7.12876 7.34824 7.42493 7.47398 7.69073 7.92162 7.99859 8.12613 8.18117 8.36557 8.69366 8.87715 8.96431 9.06568 10.24657 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.005396 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.641951 B = 5188.213097 C = 6528.195588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.115 3.885 3 O -0.550 6.550 4 C -0.158 4.158 5 C 0.106 3.894 6 N -0.631 5.631 7 C 0.532 3.468 8 O -0.519 6.519 9 C -0.064 4.064 10 C -0.182 4.182 11 C -0.081 4.081 12 C -0.239 4.239 13 C -0.107 4.107 14 C -0.159 4.159 15 C 0.129 3.871 16 C -0.456 4.456 17 H 0.073 0.927 18 C 0.077 3.923 19 N -0.796 5.796 20 Si 0.901 3.099 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.262 1.262 24 C 0.122 3.878 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.375 0.625 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.279 0.721 40 H 0.078 0.922 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 11.896 -8.602 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.074 3.926 3 O -0.356 6.356 4 C -0.197 4.197 5 C -0.018 4.018 6 N -0.369 5.369 7 C 0.322 3.678 8 O -0.392 6.392 9 C -0.103 4.103 10 C -0.184 4.184 11 C -0.099 4.099 12 C -0.258 4.258 13 C -0.126 4.126 14 C -0.178 4.178 15 C 0.127 3.873 16 C -0.486 4.486 17 H 0.091 0.909 18 C -0.140 4.140 19 N -0.421 5.421 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.186 1.186 24 C -0.001 4.001 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.223 0.777 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.073 11.249 -7.355 15.187 hybrid contribution -1.024 -0.169 -0.826 1.327 sum -8.097 11.080 -8.181 15.977 Atomic orbital electron populations 1.22342 0.94321 1.03323 1.02799 1.22155 0.92631 0.82698 0.95156 1.86613 1.73925 1.22638 1.52391 1.23516 0.97342 1.01057 0.97761 1.22244 0.96759 1.00825 0.81927 1.48641 1.30764 1.46306 1.11179 1.21008 0.83319 0.77333 0.86160 1.90685 1.69957 1.62120 1.16460 1.20234 0.93603 0.97361 0.99129 1.19084 0.99608 0.97107 1.02588 1.20303 0.96286 0.96880 0.96438 1.20306 1.04169 0.96478 1.04874 1.20678 0.97641 0.95123 0.99134 1.21290 0.98072 1.00805 0.97659 1.17333 0.90794 0.89784 0.89407 1.19450 1.07176 0.91304 1.30637 0.90900 1.25868 0.97417 0.97272 0.93447 1.69820 1.30517 1.05102 1.36706 0.86429 0.83063 0.78729 0.79218 1.19571 1.20065 1.18580 1.21734 0.89079 0.93924 0.95380 0.91423 0.91881 0.90977 0.77726 0.89546 0.89711 0.91390 0.90168 0.90709 0.88668 0.89769 0.89656 0.89577 0.86513 0.91011 0.90433 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 8.80 37.16 0.33 -1.04 16 2 C 0.11 1.19 1.27 -88.78 -0.11 1.07 16 3 O -0.55 -5.59 13.11 -35.23 -0.46 -6.05 16 4 C -0.16 -1.48 6.27 -24.47 -0.15 -1.63 16 5 C 0.11 1.30 6.69 -2.42 -0.02 1.29 16 6 N -0.63 -10.50 3.32 -170.38 -0.57 -11.07 16 7 C 0.53 11.24 7.46 -10.98 -0.08 11.16 16 8 O -0.52 -13.27 16.36 5.56 0.09 -13.18 16 9 C -0.06 -1.32 4.18 -29.04 -0.12 -1.44 16 10 C -0.18 -4.55 4.43 -103.91 -0.46 -5.01 16 11 C -0.08 -1.94 9.66 -39.66 -0.38 -2.32 16 12 C -0.24 -5.73 10.05 -39.29 -0.39 -6.13 16 13 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 14 C -0.16 -4.34 8.69 -38.87 -0.34 -4.68 16 15 C 0.13 3.54 5.56 -106.82 -0.59 2.95 16 16 C -0.46 -12.24 8.14 -37.74 -0.31 -12.55 16 17 H 0.07 1.92 6.67 -52.49 -0.35 1.57 16 18 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 19 N -0.80 -20.79 10.96 55.55 0.61 -20.18 16 20 Si 0.90 19.05 29.59 -169.99 -5.03 14.02 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 24 C 0.12 1.80 6.23 -3.06 -0.02 1.78 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.59 8.10 -51.92 -0.42 0.17 16 28 H 0.38 2.05 9.07 45.56 0.41 2.47 16 29 H 0.09 0.79 8.02 -51.93 -0.42 0.37 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.94 7.48 -51.93 -0.39 0.56 16 33 H 0.07 1.33 8.05 -51.93 -0.42 0.91 16 34 H 0.10 1.92 6.79 -51.93 -0.35 1.57 16 35 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.12 3.26 6.20 -52.49 -0.33 2.94 16 39 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 40 H 0.08 1.16 7.82 -51.93 -0.41 0.76 16 41 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -32.94 338.62 -8.58 -41.51 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.18 Total: 7.61 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -3.14 Total: -17.76 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.04 Total: -31.25 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.37 Total: -19.24 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.94 -8.58 -41.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777410215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.482 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds