Wall clock time and date at job start Tue Mar 31 2020 07:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 110.64103 * 2 1 4 4 C 1.55158 * 110.72371 * 236.65954 * 2 1 3 5 5 C 1.55117 * 101.48739 * 205.97039 * 4 2 1 6 6 N 1.47425 * 104.72728 * 37.29529 * 5 4 2 7 7 C 1.34778 * 125.65168 * 155.81324 * 6 5 4 8 8 O 1.21271 * 119.99943 * 179.69427 * 7 6 5 9 9 C 1.50701 * 119.99895 * 359.69770 * 7 6 5 10 10 C 1.50696 * 109.47141 * 179.97438 * 9 7 6 11 11 C 1.37633 * 120.12998 * 265.00262 * 10 9 7 12 12 C 1.38613 * 120.24915 * 179.97438 * 11 10 9 13 13 C 1.38660 * 120.50327 * 0.02562 * 12 11 10 14 14 C 1.37604 * 120.24610 * 0.02562 * 13 12 11 15 15 C 1.40702 * 120.12565 * 84.72420 * 10 9 7 16 16 C 1.41396 * 120.24376 * 359.97438 * 15 10 9 17 17 H 1.08002 * 120.00172 * 333.90404 * 16 15 10 18 18 C 1.39949 * 120.00071 * 153.89160 * 16 15 10 19 19 N 1.30824 * 120.00017 * 343.71687 * 18 16 15 20 20 Si 1.86802 * 119.99949 * 163.70982 * 18 16 15 21 21 H 1.48507 * 109.46775 * 90.00559 * 20 18 16 22 22 H 1.48495 * 109.47004 * 210.00494 * 20 18 16 23 23 H 1.48499 * 109.47118 * 330.00659 * 20 18 16 24 24 C 1.47023 * 108.69966 * 335.55681 * 6 5 4 25 25 H 1.08994 * 109.47379 * 296.85791 * 1 2 3 26 26 H 1.08998 * 109.47441 * 56.86465 * 1 2 3 27 27 H 1.09007 * 109.46620 * 176.85901 * 1 2 3 28 28 H 0.96704 * 113.99603 * 303.14049 * 3 2 1 29 29 H 1.09003 * 111.00037 * 324.21177 * 4 2 1 30 30 H 1.08997 * 111.00071 * 88.01994 * 4 2 1 31 31 H 1.09004 * 110.49804 * 278.45319 * 5 4 2 32 32 H 1.09007 * 110.34322 * 156.06515 * 5 4 2 33 33 H 1.09002 * 109.47039 * 59.99746 * 9 7 6 34 34 H 1.09001 * 109.47223 * 299.99756 * 9 7 6 35 35 H 1.08002 * 119.87951 * 359.97438 * 11 10 9 36 36 H 1.08003 * 119.75262 * 179.97438 * 12 11 10 37 37 H 1.07993 * 119.87738 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.12922 * 179.97438 * 14 13 12 39 39 H 0.96993 * 119.99888 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.88449 * 120.69890 * 24 6 5 41 41 H 1.09007 * 109.87836 * 241.71183 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0337 1.3372 0.0000 4 6 2.0790 -0.7976 -1.2123 5 6 3.4665 -1.2467 -0.6839 6 7 3.2445 -1.5494 0.7418 7 6 3.9923 -2.3810 1.4940 8 8 3.7194 -2.5514 2.6633 9 6 5.1675 -3.0990 0.8820 10 6 5.8302 -3.9592 1.9269 11 6 6.9107 -3.4804 2.6323 12 6 7.5217 -4.2694 3.5943 13 6 7.0538 -5.5479 3.8571 14 6 5.9756 -6.0476 3.1634 15 6 5.3430 -5.2529 2.1893 16 6 4.2297 -5.7530 1.4754 17 1 3.5030 -5.0701 1.0606 18 6 4.0694 -7.1329 1.3060 19 7 5.0783 -7.9391 1.5149 20 14 2.4149 -7.8237 0.7818 21 1 2.3515 -7.8854 -0.7007 22 1 2.2487 -9.1890 1.3416 23 1 1.3292 -6.9457 1.2875 24 6 2.0760 -0.7891 1.2087 25 1 -0.3634 0.4642 0.9167 26 1 -0.3634 0.5617 -0.8605 27 1 -0.3633 -1.0262 -0.0563 28 1 1.7204 1.8755 -0.7398 29 1 1.4452 -1.6561 -1.4345 30 1 2.1844 -0.1556 -2.0869 31 1 4.1947 -0.4428 -0.7920 32 1 3.8032 -2.1382 -1.2131 33 1 5.8837 -2.3685 0.5057 34 1 4.8223 -3.7262 0.0601 35 1 7.2839 -2.4862 2.4356 36 1 8.3694 -3.8858 4.1428 37 1 7.5378 -6.1540 4.6085 38 1 5.6129 -7.0438 3.3693 39 1 4.9672 -8.8955 1.3978 40 1 1.3129 -1.4731 1.5801 41 1 2.3735 -0.1009 1.9999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777410215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:20 Heat of formation + Delta-G solvation = -91.310030 kcal Electronic energy + Delta-G solvation = -23208.643194 eV Core-core repulsion = 19858.839212 eV Total energy + Delta-G solvation = -3349.803982 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27124 -39.79763 -38.78436 -36.34307 -35.51281 -33.57235 -32.46628 -31.35664 -30.60835 -29.09382 -27.37528 -26.47564 -24.08765 -22.83964 -22.01791 -21.33780 -20.17996 -19.06181 -18.11287 -17.75588 -17.22890 -16.87453 -16.54286 -16.15531 -15.72250 -15.45095 -15.29233 -14.97849 -14.40033 -14.12893 -14.04137 -13.84209 -13.63457 -13.49269 -13.34066 -13.00992 -12.90864 -12.75599 -12.68909 -12.55370 -12.50926 -12.30153 -12.13907 -11.73950 -11.34436 -11.23412 -11.02730 -10.90363 -10.78663 -9.65201 -9.24139 -9.18290 -8.60335 -6.30569 0.97578 1.11161 1.34322 1.46073 1.52738 1.75408 2.07816 2.19374 2.77168 3.11135 3.46183 3.57652 3.74392 3.86749 4.08228 4.26646 4.31383 4.38466 4.38690 4.56208 4.60406 4.65172 4.68063 4.72133 4.77387 4.80885 4.95821 5.00472 5.04273 5.15967 5.18145 5.24800 5.35438 5.40732 5.53319 5.75694 6.02295 6.14916 6.19768 6.40763 6.52698 6.72069 6.92924 6.98083 7.09569 7.30093 8.36304 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.005396 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.641951 B = 5188.213097 C = 6528.195588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 O -0.566 6.566 4 C -0.146 4.146 5 C 0.092 3.908 6 N -0.627 5.627 7 C 0.528 3.472 8 O -0.579 6.579 9 C -0.058 4.058 10 C -0.192 4.192 11 C -0.092 4.092 12 C -0.242 4.242 13 C -0.116 4.116 14 C -0.193 4.193 15 C 0.097 3.903 16 C -0.482 4.482 17 H 0.068 0.932 18 C 0.037 3.963 19 N -0.825 5.825 20 Si 0.971 3.029 21 H -0.252 1.252 22 H -0.267 1.267 23 H -0.269 1.269 24 C 0.110 3.890 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.399 0.601 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.287 0.713 40 H 0.066 0.934 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 13.476 -11.018 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.086 3.914 3 O -0.376 6.376 4 C -0.184 4.184 5 C -0.029 4.029 6 N -0.362 5.362 7 C 0.319 3.681 8 O -0.457 6.457 9 C -0.097 4.097 10 C -0.194 4.194 11 C -0.110 4.110 12 C -0.261 4.261 13 C -0.135 4.135 14 C -0.212 4.212 15 C 0.095 3.905 16 C -0.512 4.512 17 H 0.086 0.914 18 C -0.178 4.178 19 N -0.451 5.451 20 Si 0.792 3.208 21 H -0.176 1.176 22 H -0.191 1.191 23 H -0.194 1.194 24 C -0.013 4.013 25 H 0.079 0.921 26 H 0.112 0.888 27 H 0.088 0.912 28 H 0.250 0.750 29 H 0.109 0.891 30 H 0.141 0.859 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.978 12.874 -9.840 18.061 hybrid contribution -0.666 -0.537 -0.058 0.858 sum -8.644 12.337 -9.899 18.025 Atomic orbital electron populations 1.22312 0.92321 1.03724 1.03936 1.21964 0.93747 0.82627 0.93070 1.86559 1.74367 1.22602 1.54056 1.23541 0.94970 1.01619 0.98289 1.22638 0.99370 1.01672 0.79265 1.48629 1.30134 1.44582 1.12866 1.20973 0.83736 0.77798 0.85639 1.90648 1.71630 1.64526 1.18937 1.20195 0.94152 0.97525 0.97864 1.19564 0.99753 0.96869 1.03221 1.20725 0.95993 0.98179 0.96121 1.20712 1.04727 0.95934 1.04766 1.20963 0.97129 0.96083 0.99282 1.21308 0.99911 1.00659 0.99337 1.17733 0.91611 0.91218 0.89987 1.19579 1.07498 0.92282 1.31853 0.91415 1.26676 1.00911 0.97057 0.93151 1.69876 1.32387 1.05672 1.37174 0.85373 0.77794 0.77886 0.79720 1.17620 1.19103 1.19368 1.21933 0.88196 0.93765 0.97367 0.92050 0.88779 0.91198 0.75022 0.89068 0.85942 0.90119 0.89582 0.87569 0.88467 0.86865 0.86603 0.87469 0.88341 0.90278 0.91531 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 8.80 71.98 0.63 -1.57 16 2 C 0.13 2.32 1.27 -9.60 -0.01 2.31 16 3 O -0.57 -9.84 13.11 -148.98 -1.95 -11.80 16 4 C -0.15 -2.19 6.27 32.06 0.20 -1.99 16 5 C 0.09 2.05 6.69 86.93 0.58 2.63 16 6 N -0.63 -20.62 3.32 -811.35 -2.70 -23.32 16 7 C 0.53 22.69 7.46 87.66 0.65 23.35 16 8 O -0.58 -30.88 16.36 -3.00 -0.05 -30.93 16 9 C -0.06 -2.39 4.18 29.10 0.12 -2.27 16 10 C -0.19 -9.75 4.43 -19.41 -0.09 -9.83 16 11 C -0.09 -4.37 9.66 22.22 0.21 -4.16 16 12 C -0.24 -11.48 10.05 22.46 0.23 -11.25 16 13 C -0.12 -5.91 10.02 22.22 0.22 -5.68 16 14 C -0.19 -10.97 8.69 22.73 0.20 -10.77 16 15 C 0.10 5.50 5.56 -21.29 -0.12 5.38 16 16 C -0.48 -26.81 8.14 23.46 0.19 -26.62 16 17 H 0.07 3.70 6.67 -2.91 -0.02 3.68 16 18 C 0.04 1.90 5.16 85.26 0.44 2.34 16 19 N -0.82 -44.28 10.96 21.83 0.24 -44.04 16 20 Si 0.97 39.49 29.59 68.60 2.03 41.52 16 21 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 C 0.11 3.25 6.23 86.73 0.54 3.79 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.98 8.10 -2.38 -0.02 0.96 16 28 H 0.40 2.70 9.07 -74.05 -0.67 2.03 16 29 H 0.09 1.34 8.02 -2.39 -0.02 1.32 16 30 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.83 7.48 -2.38 -0.02 1.81 16 33 H 0.11 3.61 8.05 -2.39 -0.02 3.59 16 34 H 0.10 3.94 6.79 -2.39 -0.02 3.92 16 35 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 36 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 37 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 38 H 0.10 5.82 6.20 -2.91 -0.02 5.80 16 39 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 40 H 0.07 2.07 7.82 -2.39 -0.02 2.05 16 41 H 0.05 1.68 8.07 -2.38 -0.02 1.66 16 Total: -1.00 -75.56 338.62 1.94 -73.62 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.36 Total: 29.31 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 4.01 Total: -34.35 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -2.46 Total: -67.36 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -2.00 Total: -42.73 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -75.56 1.94 -73.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777410215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.691 kcal (2) G-P(sol) polarization free energy of solvation -75.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds