Wall clock time and date at job start Tue Mar 31 2020 07:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 110.88855 * 2 1 4 4 C 1.55152 * 111.03363 * 123.90646 * 2 1 3 5 5 C 1.54326 * 102.93877 * 153.58919 * 4 2 1 6 6 N 1.47019 * 107.27370 * 337.80467 * 5 4 2 7 7 C 1.34772 * 125.64989 * 178.97617 * 6 5 4 8 8 O 1.21283 * 119.99999 * 179.97438 * 7 6 5 9 9 C 1.50702 * 120.00278 * 359.96005 * 7 6 5 10 10 C 1.50697 * 109.47647 * 179.97438 * 9 7 6 11 11 C 1.37637 * 120.12789 * 265.00262 * 10 9 7 12 12 C 1.38607 * 120.24925 * 179.97438 * 11 10 9 13 13 C 1.38664 * 120.50328 * 0.02562 * 12 11 10 14 14 C 1.37600 * 120.24385 * 0.02562 * 13 12 11 15 15 C 1.40698 * 120.12628 * 84.72129 * 10 9 7 16 16 C 1.41401 * 120.24415 * 0.02562 * 15 10 9 17 17 H 1.07997 * 119.99391 * 333.89220 * 16 15 10 18 18 C 1.39945 * 119.99953 * 153.89576 * 16 15 10 19 19 N 1.30818 * 119.99823 * 343.70940 * 18 16 15 20 20 Si 1.86799 * 119.99985 * 163.71037 * 18 16 15 21 21 H 1.48493 * 109.46962 * 89.99837 * 20 18 16 22 22 H 1.48501 * 109.47011 * 209.99998 * 20 18 16 23 23 H 1.48502 * 109.46696 * 329.99887 * 20 18 16 24 24 C 1.47425 * 108.70313 * 358.94126 * 6 5 4 25 25 H 1.08998 * 109.47559 * 183.88208 * 1 2 3 26 26 H 1.09000 * 109.46983 * 303.88289 * 1 2 3 27 27 H 1.09004 * 109.47284 * 63.88100 * 1 2 3 28 28 H 0.96698 * 113.99850 * 56.11978 * 3 2 1 29 29 H 1.09004 * 110.72041 * 271.95062 * 4 2 1 30 30 H 1.08996 * 110.72553 * 35.22685 * 4 2 1 31 31 H 1.09000 * 109.88274 * 97.22222 * 5 4 2 32 32 H 1.09002 * 109.88096 * 218.23306 * 5 4 2 33 33 H 1.09005 * 109.47144 * 300.00173 * 9 7 6 34 34 H 1.09007 * 109.47105 * 59.99660 * 9 7 6 35 35 H 1.08002 * 119.87522 * 359.97438 * 11 10 9 36 36 H 1.07997 * 119.75400 * 180.02562 * 12 11 10 37 37 H 1.07995 * 119.87770 * 179.97438 * 13 12 11 38 38 H 1.07999 * 120.12733 * 179.97438 * 14 13 12 39 39 H 0.97006 * 120.00447 * 180.02562 * 19 18 16 40 40 H 1.08998 * 110.36938 * 265.29491 * 24 6 5 41 41 H 1.08994 * 110.36931 * 142.96495 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0395 1.3351 0.0000 4 6 2.0869 -0.8078 1.2019 5 6 3.4683 -1.2733 0.6951 6 7 3.4274 -1.2420 -0.7742 7 6 4.4478 -1.5599 -1.5953 8 8 4.3005 -1.4982 -2.7976 9 6 5.7719 -1.9917 -1.0196 10 6 6.7345 -2.2882 -2.1405 11 6 6.8863 -3.5774 -2.5979 12 6 7.7706 -3.8529 -3.6291 13 6 8.5119 -2.8358 -4.2112 14 6 8.3770 -1.5397 -3.7693 15 6 7.4770 -1.2472 -2.7276 16 6 7.3253 0.0819 -2.2696 17 1 6.4007 0.3905 -1.8046 18 6 8.3732 0.9974 -2.4189 19 7 9.5824 0.5708 -2.6783 20 14 8.0453 2.8284 -2.2477 21 1 8.2244 3.2329 -0.8302 22 1 8.9967 3.5836 -3.1020 23 1 6.6542 3.1241 -2.6750 24 6 2.0852 -0.8062 -1.2007 25 1 -0.3634 -1.0253 0.0696 26 1 -0.3633 0.5729 0.8531 27 1 -0.3634 0.4524 -0.9227 28 1 1.7197 1.8781 0.7334 29 1 2.1929 -0.1699 2.0794 30 1 1.4481 -1.6634 1.4207 31 1 4.2432 -0.5986 1.0588 32 1 3.6676 -2.2875 1.0412 33 1 6.1746 -1.1935 -0.3959 34 1 5.6306 -2.8882 -0.4158 35 1 6.3144 -4.3775 -2.1515 36 1 7.8831 -4.8673 -3.9820 37 1 9.1982 -3.0619 -5.0138 38 1 8.9556 -0.7490 -4.2237 39 1 10.3089 1.2053 -2.7814 40 1 1.4521 -1.6702 -1.4026 41 1 2.1553 -0.1714 -2.0839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777410217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:24 Heat of formation + Delta-G solvation = -68.134705 kcal Electronic energy + Delta-G solvation = -23288.301907 eV Core-core repulsion = 19939.502883 eV Total energy + Delta-G solvation = -3348.799025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.97597 -38.27589 -37.05161 -35.16879 -33.54517 -31.97472 -31.29306 -29.65715 -29.37931 -27.58015 -25.82837 -24.75806 -22.95055 -20.86179 -20.72662 -19.97354 -18.65585 -17.16386 -16.93329 -16.37882 -15.74035 -15.43464 -14.98551 -14.52005 -14.31299 -14.18037 -13.69320 -13.47249 -13.22190 -12.86970 -12.57953 -12.44089 -12.38036 -12.28964 -11.77654 -11.65262 -11.49346 -11.37619 -11.07747 -10.94285 -10.88910 -10.85417 -10.61339 -10.32266 -10.11210 -9.41049 -9.30058 -9.10161 -9.06355 -8.25194 -7.23881 -7.21437 -6.66158 -4.26098 2.84942 3.01828 3.12503 3.20293 3.34248 3.39418 3.48871 3.91246 4.01898 4.30139 4.49409 4.65435 4.73673 5.07212 5.12385 5.29038 5.47959 5.48221 5.60656 5.67156 5.75570 5.79989 5.86954 5.91863 5.97157 6.11718 6.18320 6.34998 6.50862 6.57569 6.67370 6.87688 7.16837 7.37157 7.49803 7.53470 7.71917 7.95096 8.02194 8.16316 8.20312 8.39561 8.72918 8.90874 9.00096 9.09410 10.27889 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.005715 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.757297 B = 4898.505367 C = 6295.723240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 O -0.543 6.543 4 C -0.156 4.156 5 C 0.108 3.892 6 N -0.628 5.628 7 C 0.533 3.467 8 O -0.519 6.519 9 C -0.064 4.064 10 C -0.182 4.182 11 C -0.081 4.081 12 C -0.240 4.240 13 C -0.107 4.107 14 C -0.159 4.159 15 C 0.129 3.871 16 C -0.454 4.454 17 H 0.074 0.926 18 C 0.077 3.923 19 N -0.796 5.796 20 Si 0.901 3.099 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.260 1.260 24 C 0.120 3.880 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.374 0.626 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.279 0.721 40 H 0.075 0.925 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.967 -0.197 10.146 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.070 3.930 3 O -0.348 6.348 4 C -0.194 4.194 5 C -0.016 4.016 6 N -0.366 5.366 7 C 0.323 3.677 8 O -0.393 6.393 9 C -0.103 4.103 10 C -0.184 4.184 11 C -0.099 4.099 12 C -0.260 4.260 13 C -0.126 4.126 14 C -0.178 4.178 15 C 0.127 3.873 16 C -0.484 4.484 17 H 0.092 0.908 18 C -0.140 4.140 19 N -0.422 5.422 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.003 4.003 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.221 0.779 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.394 -0.323 8.839 16.051 hybrid contribution -0.374 1.048 0.701 1.315 sum -13.767 0.725 9.540 16.765 Atomic orbital electron populations 1.22292 0.94366 1.03046 1.02938 1.22337 0.92306 0.83179 0.95225 1.86684 1.72980 1.22258 1.52889 1.23331 0.96849 1.00843 0.98407 1.21869 0.97521 1.01096 0.81117 1.48572 1.12098 1.69518 1.06376 1.20983 0.84410 0.75977 0.86334 1.90683 1.82250 1.51617 1.14736 1.20230 0.90457 1.01334 0.98296 1.19083 1.04644 0.93297 1.01403 1.20285 0.97773 0.94898 0.96959 1.20290 1.04987 0.97133 1.03559 1.20672 0.98847 0.94084 0.98984 1.21292 1.02733 0.95112 0.98695 1.17339 0.89195 0.91880 0.88901 1.19483 0.99835 0.94343 1.34744 0.90794 1.25866 0.94385 1.01132 0.92589 1.69823 1.00209 1.36752 1.35413 0.86423 0.79763 0.82371 0.78895 1.19558 1.20116 1.18432 1.22052 0.84390 0.96918 0.96925 0.91163 0.91873 0.91371 0.77880 0.89815 0.89849 0.91163 0.91565 0.88679 0.90812 0.89831 0.89701 0.89604 0.86516 0.91039 0.90678 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 8.98 37.16 0.33 -0.93 16 2 C 0.11 1.18 1.33 -88.47 -0.12 1.06 16 3 O -0.54 -6.63 13.20 -35.23 -0.47 -7.09 16 4 C -0.16 -1.39 6.16 -24.90 -0.15 -1.55 16 5 C 0.11 1.33 6.49 -3.06 -0.02 1.31 16 6 N -0.63 -10.54 3.33 -170.52 -0.57 -11.11 16 7 C 0.53 11.43 7.46 -10.99 -0.08 11.34 16 8 O -0.52 -13.44 16.29 5.55 0.09 -13.35 16 9 C -0.06 -1.34 4.37 -29.04 -0.13 -1.46 16 10 C -0.18 -4.61 4.43 -103.91 -0.46 -5.07 16 11 C -0.08 -1.94 9.66 -39.66 -0.38 -2.33 16 12 C -0.24 -5.79 10.05 -39.29 -0.39 -6.19 16 13 C -0.11 -2.71 10.02 -39.66 -0.40 -3.11 16 14 C -0.16 -4.40 8.69 -38.87 -0.34 -4.74 16 15 C 0.13 3.60 5.56 -106.82 -0.59 3.01 16 16 C -0.45 -12.53 8.14 -37.74 -0.31 -12.84 16 17 H 0.07 2.03 6.67 -52.49 -0.35 1.68 16 18 C 0.08 2.02 5.16 -17.34 -0.09 1.93 16 19 N -0.80 -21.17 10.95 55.55 0.61 -20.57 16 20 Si 0.90 19.76 29.59 -169.99 -5.03 14.73 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 24 C 0.12 1.74 6.11 -2.53 -0.02 1.73 16 25 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.37 2.73 9.07 45.56 0.41 3.14 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.60 7.99 -51.93 -0.42 0.19 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.10 2.00 7.08 -51.93 -0.37 1.63 16 34 H 0.07 1.31 8.05 -51.92 -0.42 0.89 16 35 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.08 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.12 3.31 6.20 -52.49 -0.33 2.98 16 39 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 40 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 41 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 LS Contribution 339.70 15.07 5.12 5.12 Total: -1.00 -33.95 339.70 -8.62 -42.58 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.23 Total: 7.51 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -3.15 Total: -17.82 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.04 Total: -31.67 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.37 Total: -20.44 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.95 -8.62 -42.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777410217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.559 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds