Wall clock time and date at job start Tue Mar 31 2020 07:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 110.88855 * 2 1 4 4 C 1.55152 * 111.03363 * 123.90646 * 2 1 3 5 5 C 1.54326 * 102.93877 * 153.58919 * 4 2 1 6 6 N 1.47019 * 107.27370 * 337.80467 * 5 4 2 7 7 C 1.34772 * 125.64989 * 178.97617 * 6 5 4 8 8 O 1.21283 * 119.99999 * 179.97438 * 7 6 5 9 9 C 1.50702 * 120.00278 * 359.96005 * 7 6 5 10 10 C 1.50697 * 109.47647 * 179.97438 * 9 7 6 11 11 C 1.37637 * 120.12789 * 265.00262 * 10 9 7 12 12 C 1.38607 * 120.24925 * 179.97438 * 11 10 9 13 13 C 1.38664 * 120.50328 * 0.02562 * 12 11 10 14 14 C 1.37600 * 120.24385 * 0.02562 * 13 12 11 15 15 C 1.40698 * 120.12628 * 84.72129 * 10 9 7 16 16 C 1.41401 * 120.24415 * 0.02562 * 15 10 9 17 17 H 1.07997 * 119.99391 * 333.89220 * 16 15 10 18 18 C 1.39945 * 119.99953 * 153.89576 * 16 15 10 19 19 N 1.30818 * 119.99823 * 343.70940 * 18 16 15 20 20 Si 1.86799 * 119.99985 * 163.71037 * 18 16 15 21 21 H 1.48493 * 109.46962 * 89.99837 * 20 18 16 22 22 H 1.48501 * 109.47011 * 209.99998 * 20 18 16 23 23 H 1.48502 * 109.46696 * 329.99887 * 20 18 16 24 24 C 1.47425 * 108.70313 * 358.94126 * 6 5 4 25 25 H 1.08998 * 109.47559 * 183.88208 * 1 2 3 26 26 H 1.09000 * 109.46983 * 303.88289 * 1 2 3 27 27 H 1.09004 * 109.47284 * 63.88100 * 1 2 3 28 28 H 0.96698 * 113.99850 * 56.11978 * 3 2 1 29 29 H 1.09004 * 110.72041 * 271.95062 * 4 2 1 30 30 H 1.08996 * 110.72553 * 35.22685 * 4 2 1 31 31 H 1.09000 * 109.88274 * 97.22222 * 5 4 2 32 32 H 1.09002 * 109.88096 * 218.23306 * 5 4 2 33 33 H 1.09005 * 109.47144 * 300.00173 * 9 7 6 34 34 H 1.09007 * 109.47105 * 59.99660 * 9 7 6 35 35 H 1.08002 * 119.87522 * 359.97438 * 11 10 9 36 36 H 1.07997 * 119.75400 * 180.02562 * 12 11 10 37 37 H 1.07995 * 119.87770 * 179.97438 * 13 12 11 38 38 H 1.07999 * 120.12733 * 179.97438 * 14 13 12 39 39 H 0.97006 * 120.00447 * 180.02562 * 19 18 16 40 40 H 1.08998 * 110.36938 * 265.29491 * 24 6 5 41 41 H 1.08994 * 110.36931 * 142.96495 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0395 1.3351 0.0000 4 6 2.0869 -0.8078 1.2019 5 6 3.4683 -1.2733 0.6951 6 7 3.4274 -1.2420 -0.7742 7 6 4.4478 -1.5599 -1.5953 8 8 4.3005 -1.4982 -2.7976 9 6 5.7719 -1.9917 -1.0196 10 6 6.7345 -2.2882 -2.1405 11 6 6.8863 -3.5774 -2.5979 12 6 7.7706 -3.8529 -3.6291 13 6 8.5119 -2.8358 -4.2112 14 6 8.3770 -1.5397 -3.7693 15 6 7.4770 -1.2472 -2.7276 16 6 7.3253 0.0819 -2.2696 17 1 6.4007 0.3905 -1.8046 18 6 8.3732 0.9974 -2.4189 19 7 9.5824 0.5708 -2.6783 20 14 8.0453 2.8284 -2.2477 21 1 8.2244 3.2329 -0.8302 22 1 8.9967 3.5836 -3.1020 23 1 6.6542 3.1241 -2.6750 24 6 2.0852 -0.8062 -1.2007 25 1 -0.3634 -1.0253 0.0696 26 1 -0.3633 0.5729 0.8531 27 1 -0.3634 0.4524 -0.9227 28 1 1.7197 1.8781 0.7334 29 1 2.1929 -0.1699 2.0794 30 1 1.4481 -1.6634 1.4207 31 1 4.2432 -0.5986 1.0588 32 1 3.6676 -2.2875 1.0412 33 1 6.1746 -1.1935 -0.3959 34 1 5.6306 -2.8882 -0.4158 35 1 6.3144 -4.3775 -2.1515 36 1 7.8831 -4.8673 -3.9820 37 1 9.1982 -3.0619 -5.0138 38 1 8.9556 -0.7490 -4.2237 39 1 10.3089 1.2053 -2.7814 40 1 1.4521 -1.6702 -1.4026 41 1 2.1553 -0.1714 -2.0839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777410217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:23 Heat of formation + Delta-G solvation = -91.708660 kcal Electronic energy + Delta-G solvation = -23289.324151 eV Core-core repulsion = 19939.502883 eV Total energy + Delta-G solvation = -3349.821268 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24521 -39.78005 -38.76305 -36.33644 -35.52633 -33.57301 -32.51909 -31.36280 -30.58927 -29.08056 -27.36961 -26.47235 -24.03520 -22.83934 -21.93448 -21.41653 -20.15817 -19.08035 -18.17849 -17.68584 -17.32304 -16.78566 -16.41393 -16.15989 -15.73367 -15.50089 -15.37688 -14.92943 -14.41257 -14.27587 -13.91066 -13.76646 -13.64262 -13.52068 -13.36141 -13.01149 -12.92474 -12.78607 -12.69308 -12.55898 -12.51452 -12.17038 -12.12525 -11.73372 -11.34650 -11.23649 -11.04547 -10.93467 -10.76335 -9.59492 -9.24268 -9.18307 -8.62144 -6.31863 0.96758 1.10924 1.31374 1.43303 1.50482 1.76385 2.12566 2.17972 2.75506 3.08756 3.48247 3.64159 3.74506 3.90402 4.08353 4.27126 4.34195 4.38513 4.41474 4.55643 4.60492 4.68354 4.69944 4.73101 4.77906 4.83460 4.97417 4.99801 5.03781 5.16731 5.19448 5.27410 5.35124 5.45527 5.52878 5.75207 6.01712 6.14740 6.19492 6.40455 6.55484 6.71882 6.92895 6.97239 7.08841 7.32151 8.34314 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.005715 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.757297 B = 4898.505367 C = 6295.723240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 O -0.576 6.576 4 C -0.140 4.140 5 C 0.092 3.908 6 N -0.625 5.625 7 C 0.528 3.472 8 O -0.580 6.580 9 C -0.058 4.058 10 C -0.192 4.192 11 C -0.090 4.090 12 C -0.240 4.240 13 C -0.116 4.116 14 C -0.193 4.193 15 C 0.095 3.905 16 C -0.483 4.483 17 H 0.061 0.939 18 C 0.038 3.962 19 N -0.823 5.823 20 Si 0.968 3.032 21 H -0.253 1.253 22 H -0.262 1.262 23 H -0.275 1.275 24 C 0.107 3.893 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.395 0.605 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.287 0.713 40 H 0.095 0.905 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.767 -0.788 12.678 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.074 3.926 3 O -0.385 6.385 4 C -0.178 4.178 5 C -0.030 4.030 6 N -0.360 5.360 7 C 0.318 3.682 8 O -0.459 6.459 9 C -0.097 4.097 10 C -0.194 4.194 11 C -0.108 4.108 12 C -0.259 4.259 13 C -0.135 4.135 14 C -0.212 4.212 15 C 0.093 3.907 16 C -0.513 4.513 17 H 0.080 0.920 18 C -0.176 4.176 19 N -0.450 5.450 20 Si 0.790 3.210 21 H -0.177 1.177 22 H -0.186 1.186 23 H -0.200 1.200 24 C -0.016 4.016 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.246 0.754 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.217 -0.913 11.446 19.063 hybrid contribution 0.142 1.133 -0.075 1.144 sum -15.075 0.220 11.371 18.884 Atomic orbital electron populations 1.22242 0.91499 1.04497 1.03562 1.22360 0.94115 0.82352 0.93771 1.86628 1.73892 1.23412 1.54547 1.23355 0.94544 1.01848 0.98066 1.22279 0.99955 1.02554 0.78168 1.48567 1.11875 1.67280 1.08241 1.20932 0.85403 0.75938 0.85896 1.90646 1.83430 1.54674 1.17189 1.20188 0.89645 1.02754 0.97161 1.19574 1.04426 0.93388 1.01972 1.20728 0.97819 0.95367 0.96931 1.20731 1.03901 0.98352 1.02957 1.20969 0.99404 0.93527 0.99557 1.21300 1.04090 0.95923 0.99908 1.17731 0.90324 0.92995 0.89630 1.19542 0.99952 0.95340 1.36460 0.92042 1.26607 0.93850 1.05190 0.91969 1.69865 1.00907 1.38401 1.35807 0.85421 0.78773 0.76986 0.79866 1.17698 1.18616 1.19980 1.22349 0.83786 0.97847 0.97591 0.89557 0.89265 0.92504 0.75445 0.87219 0.87015 0.91963 0.89317 0.89227 0.87137 0.86479 0.86378 0.87395 0.88424 0.90237 0.88744 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 8.98 71.98 0.65 -1.22 16 2 C 0.12 2.18 1.33 -9.40 -0.01 2.17 16 3 O -0.58 -13.30 13.20 -148.98 -1.97 -15.27 16 4 C -0.14 -1.93 6.16 31.78 0.20 -1.74 16 5 C 0.09 2.06 6.49 86.73 0.56 2.63 16 6 N -0.62 -20.74 3.33 -811.79 -2.70 -23.44 16 7 C 0.53 23.11 7.46 87.66 0.65 23.76 16 8 O -0.58 -31.48 16.29 -3.04 -0.05 -31.53 16 9 C -0.06 -2.45 4.37 29.10 0.13 -2.32 16 10 C -0.19 -9.84 4.43 -19.41 -0.09 -9.92 16 11 C -0.09 -4.26 9.66 22.22 0.21 -4.05 16 12 C -0.24 -11.32 10.05 22.46 0.23 -11.09 16 13 C -0.12 -5.93 10.02 22.22 0.22 -5.71 16 14 C -0.19 -11.12 8.69 22.73 0.20 -10.92 16 15 C 0.10 5.54 5.56 -21.29 -0.12 5.42 16 16 C -0.48 -27.94 8.14 23.46 0.19 -27.75 16 17 H 0.06 3.58 6.67 -2.91 -0.02 3.56 16 18 C 0.04 2.07 5.16 85.26 0.44 2.51 16 19 N -0.82 -45.27 10.95 21.83 0.24 -45.03 16 20 Si 0.97 41.67 29.59 68.60 2.03 43.70 16 21 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 C 0.11 3.08 6.11 86.86 0.53 3.61 16 25 H 0.09 0.76 8.08 -2.39 -0.02 0.74 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.39 4.85 9.07 -74.06 -0.67 4.18 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.11 0.98 7.99 -2.39 -0.02 0.96 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 3.85 7.08 -2.38 -0.02 3.83 16 34 H 0.11 3.71 8.05 -2.38 -0.02 3.69 16 35 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 36 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.10 5.86 6.20 -2.91 -0.02 5.84 16 39 H 0.29 14.25 8.30 -92.70 -0.77 13.48 16 40 H 0.09 2.30 8.04 -2.39 -0.02 2.28 16 41 H 0.04 1.57 8.04 -2.39 -0.02 1.55 16 Total: -1.00 -79.29 339.70 1.91 -77.38 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.36 Total: 28.80 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 3.99 Total: -34.63 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -2.46 Total: -68.47 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -2.02 Total: -46.79 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -79.29 1.91 -77.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777410217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.325 kcal (2) G-P(sol) polarization free energy of solvation -79.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds