Wall clock time and date at job start Tue Mar 31 2020 07:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99806 * 2 1 4 4 C 1.52998 * 113.28665 * 313.06373 * 3 2 1 5 5 C 1.53509 * 114.20306 * 179.97438 * 3 2 1 6 6 N 1.47070 * 87.98289 * 220.34923 * 5 3 2 7 7 C 1.34780 * 136.05343 * 207.09047 * 6 5 3 8 8 O 1.21279 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99810 * 179.97438 * 7 6 5 10 10 C 1.50700 * 109.47105 * 179.97438 * 9 7 6 11 11 C 1.37634 * 120.12947 * 265.00368 * 10 9 7 12 12 C 1.38617 * 120.24891 * 179.97438 * 11 10 9 13 13 C 1.38659 * 120.50129 * 359.97438 * 12 11 10 14 14 C 1.37600 * 120.24526 * 0.02562 * 13 12 11 15 15 C 1.40699 * 120.12658 * 85.25608 * 10 9 7 16 16 C 1.41401 * 120.24067 * 0.02562 * 15 10 9 17 17 H 1.07990 * 120.00395 * 330.00553 * 16 15 10 18 18 C 1.39950 * 119.99504 * 150.01031 * 16 15 10 19 19 N 1.30821 * 119.99760 * 162.08641 * 18 16 15 20 20 Si 1.86805 * 120.00101 * 342.07895 * 18 16 15 21 21 H 1.48498 * 109.46722 * 95.39543 * 20 18 16 22 22 H 1.48501 * 109.47136 * 215.39649 * 20 18 16 23 23 H 1.48503 * 109.47111 * 335.39326 * 20 18 16 24 24 C 1.47070 * 87.88527 * 27.34188 * 6 5 3 25 25 H 1.09006 * 109.47184 * 300.00072 * 1 2 3 26 26 H 1.09006 * 109.47312 * 59.99700 * 1 2 3 27 27 H 1.08996 * 109.47510 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47142 * 286.93985 * 4 3 2 29 29 H 1.09006 * 109.46366 * 46.93516 * 4 3 2 30 30 H 1.08998 * 109.47358 * 166.93392 * 4 3 2 31 31 H 1.09002 * 113.46270 * 105.56399 * 5 3 2 32 32 H 1.08997 * 113.46760 * 335.12936 * 5 3 2 33 33 H 1.09005 * 109.46891 * 59.99815 * 9 7 6 34 34 H 1.08996 * 109.47321 * 300.00207 * 9 7 6 35 35 H 1.08003 * 119.87740 * 359.97438 * 11 10 9 36 36 H 1.07995 * 119.75186 * 180.02562 * 12 11 10 37 37 H 1.07995 * 119.87739 * 180.02562 * 13 12 11 38 38 H 1.08000 * 120.12345 * 179.97438 * 14 13 12 39 39 H 0.97003 * 119.99982 * 179.97438 * 19 18 16 40 40 H 1.08999 * 113.46172 * 87.43977 * 24 6 5 41 41 H 1.09002 * 113.46204 * 217.87515 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.3795 2.2483 -1.0267 5 6 3.5452 1.3110 0.0006 6 7 3.4891 2.4311 0.9520 7 6 4.2833 3.4712 1.2744 8 8 5.3407 3.6271 0.7013 9 6 3.8573 4.4404 2.3468 10 6 4.9142 5.5016 2.5134 11 6 5.8829 5.3660 3.4817 12 6 6.8566 6.3404 3.6368 13 6 6.8672 7.4609 2.8201 14 6 5.9085 7.6173 1.8455 15 6 4.9114 6.6376 1.6832 16 6 3.9177 6.7905 0.6890 17 1 3.4809 5.9194 0.2235 18 6 3.5003 8.0708 0.3080 19 7 2.8630 8.2419 -0.8216 20 14 3.8529 9.5354 1.4127 21 1 5.1008 10.2041 0.9647 22 1 2.7224 10.4955 1.3377 23 1 4.0156 9.0709 2.8138 24 6 2.1880 1.9131 1.4012 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7002 1.9617 -2.0283 29 1 0.2934 2.1834 -0.9605 30 1 1.6955 3.2714 -0.8228 31 1 3.9787 1.5806 -0.9625 32 1 3.9824 0.4055 0.4215 33 1 3.7275 3.9064 3.2883 34 1 2.9149 4.9074 2.0611 35 1 5.8845 4.4970 4.1231 36 1 7.6131 6.2255 4.3988 37 1 7.6307 8.2136 2.9494 38 1 5.9184 8.4911 1.2108 39 1 2.5734 9.1293 -1.0855 40 1 2.2674 1.1664 2.1912 41 1 1.4652 2.6960 1.6313 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777443813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:03 Heat of formation + Delta-G solvation = -18.513156 kcal Electronic energy + Delta-G solvation = -23176.258665 eV Core-core repulsion = 19829.611392 eV Total energy + Delta-G solvation = -3346.647273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.62237 -38.58799 -37.40371 -36.15858 -33.56846 -31.90787 -30.43245 -30.25344 -28.17650 -27.05069 -26.23263 -25.55706 -24.54389 -21.39138 -20.65147 -19.65902 -18.43050 -17.32588 -17.15144 -16.36571 -16.01224 -15.53658 -15.34290 -14.87170 -14.60465 -14.25297 -13.92144 -13.69006 -13.45307 -13.12544 -12.75369 -12.66114 -12.35049 -12.11671 -12.05347 -11.87817 -11.77473 -11.46734 -11.37716 -11.10383 -10.78893 -10.71246 -10.58665 -10.22867 -9.76653 -9.69114 -9.54736 -9.21570 -9.10853 -8.43529 -7.57431 -7.48044 -6.91875 -4.45772 2.54335 2.73754 3.03583 3.13954 3.23192 3.23823 3.33890 3.71625 4.00575 4.17846 4.51182 4.58460 4.87323 5.12381 5.18158 5.20586 5.42239 5.43490 5.46498 5.52971 5.65734 5.69132 5.75680 5.76666 5.82370 5.91804 6.10269 6.11310 6.19166 6.27308 6.31618 6.60798 6.74927 6.97507 7.01996 7.23060 7.45730 7.68781 7.77294 7.92713 8.06553 8.17188 8.37810 8.70487 8.77523 8.84547 10.10319 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.004970 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.503509 B = 5632.557760 C = 6683.524744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.369 6.369 3 C 0.071 3.929 4 C -0.157 4.157 5 C 0.118 3.882 6 N -0.650 5.650 7 C 0.551 3.449 8 O -0.515 6.515 9 C -0.065 4.065 10 C -0.169 4.169 11 C -0.068 4.068 12 C -0.242 4.242 13 C -0.080 4.080 14 C -0.233 4.233 15 C 0.110 3.890 16 C -0.444 4.444 17 H 0.088 0.912 18 C 0.085 3.915 19 N -0.810 5.810 20 Si 0.909 3.091 21 H -0.271 1.271 22 H -0.292 1.292 23 H -0.244 1.244 24 C 0.081 3.919 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.284 0.716 40 H 0.087 0.913 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 -11.164 3.085 13.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.287 6.287 3 C 0.031 3.969 4 C -0.215 4.215 5 C -0.005 4.005 6 N -0.390 5.390 7 C 0.342 3.658 8 O -0.388 6.388 9 C -0.104 4.104 10 C -0.170 4.170 11 C -0.087 4.087 12 C -0.261 4.261 13 C -0.098 4.098 14 C -0.252 4.252 15 C 0.107 3.893 16 C -0.473 4.473 17 H 0.106 0.894 18 C -0.133 4.133 19 N -0.435 5.435 20 Si 0.736 3.264 21 H -0.197 1.197 22 H -0.220 1.220 23 H -0.167 1.167 24 C -0.044 4.044 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.385 -10.903 2.609 12.901 hybrid contribution -0.097 0.838 0.302 0.896 sum -6.482 -10.065 2.911 12.321 Atomic orbital electron populations 1.22789 0.81067 1.02608 1.00530 1.87930 1.19914 1.26079 1.94741 1.23258 0.94387 0.84007 0.95265 1.21991 1.00896 1.00129 0.98440 1.22872 0.92624 0.90027 0.94973 1.49403 1.22458 1.26084 1.41079 1.20764 0.82457 0.78956 0.83594 1.90711 1.22580 1.72617 1.52881 1.20218 1.00621 0.93968 0.95621 1.19071 0.99505 0.98169 1.00302 1.20434 0.94353 0.96796 0.97094 1.20333 1.02806 0.98008 1.04928 1.20607 0.97254 0.96576 0.95377 1.21000 0.98800 1.02118 1.03265 1.17483 0.91418 0.90471 0.89951 1.19401 1.18151 0.93913 1.15784 0.89397 1.26147 0.92484 1.00564 0.94130 1.69705 1.29679 1.25544 1.18531 0.86349 0.77229 0.79642 0.83194 1.19722 1.21969 1.16697 1.23623 0.85679 0.97803 0.97260 0.93786 0.93355 0.89676 0.91113 0.91359 0.89940 0.89901 0.89532 0.90385 0.88212 0.89092 0.88960 0.88963 0.88287 0.90604 0.89486 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.36 101.05 1.05 1.26 16 2 O -0.37 -4.13 10.71 -35.23 -0.38 -4.50 16 3 C 0.07 0.85 1.56 -89.97 -0.14 0.71 16 4 C -0.16 -1.86 8.97 37.16 0.33 -1.53 16 5 C 0.12 1.66 8.04 -8.49 -0.07 1.60 16 6 N -0.65 -10.65 3.50 -185.00 -0.65 -11.29 16 7 C 0.55 11.43 7.71 -10.99 -0.08 11.34 16 8 O -0.51 -13.04 16.81 5.56 0.09 -12.95 16 9 C -0.06 -1.29 5.02 -29.04 -0.15 -1.43 16 10 C -0.17 -3.97 4.43 -103.91 -0.46 -4.43 16 11 C -0.07 -1.51 9.66 -39.66 -0.38 -1.89 16 12 C -0.24 -5.29 10.05 -39.29 -0.39 -5.68 16 13 C -0.08 -1.83 10.02 -39.66 -0.40 -2.22 16 14 C -0.23 -5.88 7.17 -38.87 -0.28 -6.16 16 15 C 0.11 2.85 5.09 -106.82 -0.54 2.31 16 16 C -0.44 -12.02 8.56 -37.74 -0.32 -12.35 16 17 H 0.09 2.50 7.00 -52.49 -0.37 2.14 16 18 C 0.09 2.24 5.41 -17.34 -0.09 2.15 16 19 N -0.81 -21.60 13.93 55.55 0.77 -20.83 16 20 Si 0.91 20.94 24.52 -169.99 -4.17 16.77 16 21 H -0.27 -6.16 6.72 56.52 0.38 -5.78 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.24 -5.72 6.86 56.52 0.39 -5.33 16 24 C 0.08 0.99 7.82 -8.36 -0.07 0.92 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.36 6.36 -51.93 -0.33 0.03 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.66 6.12 -51.93 -0.32 0.35 16 30 H 0.08 1.19 7.94 -51.93 -0.41 0.77 16 31 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 34 H 0.10 1.97 7.12 -51.93 -0.37 1.60 16 35 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.10 2.49 4.77 -52.49 -0.25 2.24 16 39 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -31.69 336.80 -7.11 -38.80 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.86 Total: 4.34 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -2.00 Total: -15.41 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.13 Total: -32.12 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.28 Total: -17.46 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.17 Total: 16.77 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.69 -7.11 -38.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777443813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.287 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds