Wall clock time and date at job start Tue Mar 31 2020 07:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99806 * 2 1 4 4 C 1.52998 * 113.28665 * 313.06373 * 3 2 1 5 5 C 1.53509 * 114.20306 * 179.97438 * 3 2 1 6 6 N 1.47070 * 87.98289 * 220.34923 * 5 3 2 7 7 C 1.34780 * 136.05343 * 207.09047 * 6 5 3 8 8 O 1.21279 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99810 * 179.97438 * 7 6 5 10 10 C 1.50700 * 109.47105 * 179.97438 * 9 7 6 11 11 C 1.37634 * 120.12947 * 265.00368 * 10 9 7 12 12 C 1.38617 * 120.24891 * 179.97438 * 11 10 9 13 13 C 1.38659 * 120.50129 * 359.97438 * 12 11 10 14 14 C 1.37600 * 120.24526 * 0.02562 * 13 12 11 15 15 C 1.40699 * 120.12658 * 85.25608 * 10 9 7 16 16 C 1.41401 * 120.24067 * 0.02562 * 15 10 9 17 17 H 1.07990 * 120.00395 * 330.00553 * 16 15 10 18 18 C 1.39950 * 119.99504 * 150.01031 * 16 15 10 19 19 N 1.30821 * 119.99760 * 162.08641 * 18 16 15 20 20 Si 1.86805 * 120.00101 * 342.07895 * 18 16 15 21 21 H 1.48498 * 109.46722 * 95.39543 * 20 18 16 22 22 H 1.48501 * 109.47136 * 215.39649 * 20 18 16 23 23 H 1.48503 * 109.47111 * 335.39326 * 20 18 16 24 24 C 1.47070 * 87.88527 * 27.34188 * 6 5 3 25 25 H 1.09006 * 109.47184 * 300.00072 * 1 2 3 26 26 H 1.09006 * 109.47312 * 59.99700 * 1 2 3 27 27 H 1.08996 * 109.47510 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47142 * 286.93985 * 4 3 2 29 29 H 1.09006 * 109.46366 * 46.93516 * 4 3 2 30 30 H 1.08998 * 109.47358 * 166.93392 * 4 3 2 31 31 H 1.09002 * 113.46270 * 105.56399 * 5 3 2 32 32 H 1.08997 * 113.46760 * 335.12936 * 5 3 2 33 33 H 1.09005 * 109.46891 * 59.99815 * 9 7 6 34 34 H 1.08996 * 109.47321 * 300.00207 * 9 7 6 35 35 H 1.08003 * 119.87740 * 359.97438 * 11 10 9 36 36 H 1.07995 * 119.75186 * 180.02562 * 12 11 10 37 37 H 1.07995 * 119.87739 * 180.02562 * 13 12 11 38 38 H 1.08000 * 120.12345 * 179.97438 * 14 13 12 39 39 H 0.97003 * 119.99982 * 179.97438 * 19 18 16 40 40 H 1.08999 * 113.46172 * 87.43977 * 24 6 5 41 41 H 1.09002 * 113.46204 * 217.87515 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.3795 2.2483 -1.0267 5 6 3.5452 1.3110 0.0006 6 7 3.4891 2.4311 0.9520 7 6 4.2833 3.4712 1.2744 8 8 5.3407 3.6271 0.7013 9 6 3.8573 4.4404 2.3468 10 6 4.9142 5.5016 2.5134 11 6 5.8829 5.3660 3.4817 12 6 6.8566 6.3404 3.6368 13 6 6.8672 7.4609 2.8201 14 6 5.9085 7.6173 1.8455 15 6 4.9114 6.6376 1.6832 16 6 3.9177 6.7905 0.6890 17 1 3.4809 5.9194 0.2235 18 6 3.5003 8.0708 0.3080 19 7 2.8630 8.2419 -0.8216 20 14 3.8529 9.5354 1.4127 21 1 5.1008 10.2041 0.9647 22 1 2.7224 10.4955 1.3377 23 1 4.0156 9.0709 2.8138 24 6 2.1880 1.9131 1.4012 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7002 1.9617 -2.0283 29 1 0.2934 2.1834 -0.9605 30 1 1.6955 3.2714 -0.8228 31 1 3.9787 1.5806 -0.9625 32 1 3.9824 0.4055 0.4215 33 1 3.7275 3.9064 3.2883 34 1 2.9149 4.9074 2.0611 35 1 5.8845 4.4970 4.1231 36 1 7.6131 6.2255 4.3988 37 1 7.6307 8.2136 2.9494 38 1 5.9184 8.4911 1.2108 39 1 2.5734 9.1293 -1.0855 40 1 2.2674 1.1664 2.1912 41 1 1.4652 2.6960 1.6313 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777443813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:02 Heat of formation + Delta-G solvation = -39.289548 kcal Electronic energy + Delta-G solvation = -23177.159597 eV Core-core repulsion = 19829.611392 eV Total energy + Delta-G solvation = -3347.548205 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81301 -40.17019 -38.98677 -37.30333 -35.49416 -33.61141 -32.18933 -31.58397 -29.44066 -28.19750 -27.33787 -26.98531 -26.13758 -23.22005 -22.10041 -21.10927 -19.71662 -19.25002 -18.34345 -17.69031 -17.59216 -16.92482 -16.47946 -16.24102 -16.06007 -15.75543 -15.44524 -15.34231 -14.59107 -14.48139 -14.39627 -14.05909 -13.84837 -13.67585 -13.31419 -13.14461 -13.09444 -12.80100 -12.75718 -12.68550 -12.51546 -12.30376 -11.99646 -11.54634 -11.51935 -11.39603 -10.99988 -10.96190 -10.54432 -9.76485 -9.41082 -9.30804 -8.86967 -6.45709 0.76910 0.89298 1.27209 1.38948 1.49210 1.69030 1.77387 2.14086 2.63363 2.73915 3.18101 3.40497 3.59427 3.82573 4.00584 4.17234 4.25704 4.41185 4.44301 4.44403 4.49191 4.54461 4.56096 4.61014 4.66847 4.69038 4.77345 4.79159 4.87998 4.91959 4.92975 5.00443 5.14514 5.15389 5.36776 5.66256 5.85763 5.94085 6.04106 6.17698 6.28248 6.44822 6.67484 6.79707 6.89915 7.22433 8.20933 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.004970 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.503509 B = 5632.557760 C = 6683.524744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.376 6.376 3 C 0.088 3.912 4 C -0.156 4.156 5 C 0.108 3.892 6 N -0.653 5.653 7 C 0.549 3.451 8 O -0.577 6.577 9 C -0.062 4.062 10 C -0.176 4.176 11 C -0.078 4.078 12 C -0.230 4.230 13 C -0.090 4.090 14 C -0.257 4.257 15 C 0.084 3.916 16 C -0.469 4.469 17 H 0.055 0.945 18 C 0.049 3.951 19 N -0.851 5.851 20 Si 0.963 3.037 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.251 1.251 24 C 0.083 3.917 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.291 0.709 40 H 0.114 0.886 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 -12.381 5.545 15.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.294 6.294 3 C 0.047 3.953 4 C -0.213 4.213 5 C -0.015 4.015 6 N -0.391 5.391 7 C 0.340 3.660 8 O -0.455 6.455 9 C -0.101 4.101 10 C -0.178 4.178 11 C -0.096 4.096 12 C -0.248 4.248 13 C -0.108 4.108 14 C -0.276 4.276 15 C 0.081 3.919 16 C -0.499 4.499 17 H 0.073 0.927 18 C -0.165 4.165 19 N -0.477 5.477 20 Si 0.787 3.213 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.174 1.174 24 C -0.040 4.040 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.781 -12.162 5.075 14.820 hybrid contribution 0.043 0.991 -0.391 1.066 sum -6.738 -11.171 4.684 13.861 Atomic orbital electron populations 1.23057 0.79138 1.04261 1.01392 1.87920 1.21897 1.24801 1.94780 1.22890 0.92791 0.84606 0.94965 1.21966 1.02537 0.98195 0.98618 1.23113 0.94762 0.89660 0.93973 1.49304 1.23246 1.25396 1.41140 1.20765 0.82057 0.79791 0.83345 1.90668 1.25356 1.74426 1.55055 1.20224 0.99151 0.93446 0.97285 1.19537 1.00543 0.97970 0.99752 1.20894 0.93706 0.98061 0.96975 1.20876 1.02731 0.96790 1.04450 1.20997 0.97218 0.97894 0.94725 1.21153 0.99761 1.02168 1.04489 1.17727 0.91549 0.92103 0.90491 1.19306 1.19777 0.93389 1.17446 0.92702 1.26769 0.92254 1.02412 0.95034 1.69737 1.31633 1.26554 1.19825 0.85524 0.77586 0.77175 0.81012 1.19380 1.20271 1.17407 1.23904 0.83526 0.98417 0.98134 0.92600 0.92814 0.87726 0.91006 0.88860 0.93142 0.91529 0.87762 0.86483 0.88821 0.85654 0.85268 0.85920 0.89039 0.89832 0.86808 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.36 113.37 1.17 1.40 16 2 O -0.38 -7.46 10.71 -148.98 -1.60 -9.05 16 3 C 0.09 2.00 1.56 -10.37 -0.02 1.98 16 4 C -0.16 -3.65 8.97 71.98 0.65 -3.00 16 5 C 0.11 3.00 8.04 83.19 0.67 3.67 16 6 N -0.65 -21.28 3.50 -858.08 -3.00 -24.28 16 7 C 0.55 23.14 7.71 87.66 0.68 23.82 16 8 O -0.58 -30.36 16.81 -3.03 -0.05 -30.41 16 9 C -0.06 -2.43 5.02 29.10 0.15 -2.29 16 10 C -0.18 -8.24 4.43 -19.41 -0.09 -8.33 16 11 C -0.08 -3.25 9.66 22.22 0.21 -3.04 16 12 C -0.23 -9.28 10.05 22.46 0.23 -9.06 16 13 C -0.09 -3.94 10.02 22.22 0.22 -3.72 16 14 C -0.26 -12.97 7.17 22.73 0.16 -12.81 16 15 C 0.08 4.45 5.09 -21.29 -0.11 4.34 16 16 C -0.47 -26.75 8.56 23.46 0.20 -26.55 16 17 H 0.05 3.37 7.00 -2.92 -0.02 3.35 16 18 C 0.05 2.70 5.41 85.26 0.46 3.16 16 19 N -0.85 -47.41 13.93 21.83 0.30 -47.11 16 20 Si 0.96 43.96 24.52 68.60 1.68 45.64 16 21 H -0.27 -11.93 6.72 99.48 0.67 -11.26 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.25 -11.56 6.86 99.48 0.68 -10.87 16 24 C 0.08 1.86 7.82 83.27 0.65 2.52 16 25 H 0.06 0.61 8.14 -2.38 -0.02 0.60 16 26 H 0.05 0.65 6.36 -2.38 -0.02 0.64 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.68 6.12 -2.38 -0.01 1.66 16 30 H 0.05 1.52 7.94 -2.39 -0.02 1.50 16 31 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 32 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.12 3.57 8.05 -2.38 -0.02 3.56 16 34 H 0.09 3.79 7.12 -2.39 -0.02 3.77 16 35 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 38 H 0.09 4.65 4.77 -2.91 -0.01 4.64 16 39 H 0.29 14.63 8.30 -92.71 -0.77 13.86 16 40 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.09 1.90 8.13 -2.39 -0.02 1.88 16 Total: -1.00 -72.16 336.80 3.54 -68.62 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.96 Total: 24.51 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 5.24 Total: -27.91 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -2.70 Total: -71.39 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -1.65 Total: -39.47 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.68 Total: 45.64 kcal Total: -72.16 3.54 -68.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777443813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.326 kcal (2) G-P(sol) polarization free energy of solvation -72.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds