Wall clock time and date at job start Tue Mar 31 2020 07:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 113.41051 * 2 1 4 4 C 1.53492 * 114.20463 * 133.20232 * 2 1 3 5 5 N 1.47069 * 88.04954 * 139.68697 * 4 2 1 6 6 C 1.34773 * 136.06245 * 152.88632 * 5 4 2 7 7 O 1.21283 * 120.00039 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00290 * 180.02562 * 6 5 4 9 9 C 1.50700 * 109.47267 * 179.97438 * 8 6 5 10 10 C 1.38319 * 119.96931 * 89.99609 * 9 8 6 11 11 C 1.38272 * 120.13858 * 180.02562 * 10 9 8 12 12 C 1.38128 * 120.07264 * 359.97438 * 11 10 9 13 13 C 1.38853 * 119.92413 * 0.02562 * 12 11 10 14 14 O 1.35756 * 120.06383 * 180.02562 * 13 12 11 15 15 C 1.34827 * 117.00024 * 354.46889 * 14 13 12 16 16 H 1.07996 * 120.00133 * 5.05801 * 15 14 13 17 17 C 1.38660 * 119.99464 * 185.05344 * 15 14 13 18 18 N 1.31560 * 119.99347 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00445 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47127 * 89.99794 * 19 17 15 21 21 H 1.48491 * 109.47298 * 209.99861 * 19 17 15 22 22 H 1.48493 * 109.47144 * 329.99901 * 19 17 15 23 23 C 1.38079 * 119.96154 * 269.72079 * 9 8 6 24 24 C 1.47073 * 87.88037 * 332.84763 * 5 4 2 25 25 H 1.09000 * 109.47423 * 286.79464 * 1 2 3 26 26 H 1.08995 * 109.47257 * 46.79979 * 1 2 3 27 27 H 1.09001 * 109.47101 * 166.80105 * 1 2 3 28 28 H 1.09001 * 109.47185 * 193.20103 * 3 2 1 29 29 H 1.08998 * 109.47648 * 313.20485 * 3 2 1 30 30 H 1.09009 * 109.47447 * 73.20136 * 3 2 1 31 31 H 1.08993 * 113.47641 * 24.87400 * 4 2 1 32 32 H 1.09006 * 113.46457 * 254.49249 * 4 2 1 33 33 H 1.09000 * 109.46600 * 299.99460 * 8 6 5 34 34 H 1.09002 * 109.47095 * 59.99255 * 8 6 5 35 35 H 1.08007 * 119.92952 * 359.97438 * 10 9 8 36 36 H 1.08005 * 119.96414 * 179.97438 * 11 10 9 37 37 H 1.07988 * 120.03577 * 180.02562 * 12 11 10 38 38 H 0.97006 * 119.99774 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.03546 * 0.02562 * 23 9 8 40 40 H 1.09000 * 113.46620 * 141.90335 * 24 5 4 41 41 H 1.08995 * 113.46823 * 272.28068 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1379 1.4040 0.0000 4 6 2.1594 -0.9584 1.0205 5 7 3.1611 -1.3057 0.0013 6 6 4.4344 -1.7474 0.0029 7 8 5.0063 -1.9454 1.0539 8 6 5.1480 -1.9942 -1.3013 9 6 6.5477 -2.4791 -1.0241 10 6 6.7972 -3.8337 -0.8974 11 6 8.0800 -4.2825 -0.6426 12 6 9.1168 -3.3788 -0.5143 13 6 8.8695 -2.0184 -0.6410 14 8 9.8864 -1.1278 -0.5160 15 6 11.0893 -1.6188 -0.1560 16 1 11.2307 -2.6852 -0.0608 17 6 12.1449 -0.7545 0.0918 18 7 13.3188 -1.2337 0.4426 19 14 11.9002 1.0900 -0.0723 20 1 11.4613 1.6491 1.2315 21 1 13.1798 1.7250 -0.4777 22 1 10.8647 1.3623 -1.1013 23 6 7.5808 -1.5710 -0.9027 24 6 2.1614 -0.9599 -1.0206 25 1 -0.3634 0.2969 0.9838 26 1 -0.3633 0.7034 -0.7491 27 1 -0.3633 -1.0005 -0.2347 28 1 3.2004 1.3399 -0.2347 29 1 1.6367 2.0170 -0.7490 30 1 2.0097 1.8555 0.9839 31 1 1.5102 -1.7906 1.2924 32 1 2.5812 -0.4520 1.8888 33 1 4.6084 -2.7487 -1.8736 34 1 5.1916 -1.0670 -1.8728 35 1 5.9881 -4.5423 -0.9968 36 1 8.2716 -5.3408 -0.5437 37 1 10.1184 -3.7300 -0.3157 38 1 14.0572 -0.6291 0.6164 39 1 7.3860 -0.5138 -1.0058 40 1 2.5848 -0.4541 -1.8883 41 1 1.5134 -1.7928 -1.2931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790229882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:05 Heat of formation + Delta-G solvation = -3.304702 kcal Electronic energy + Delta-G solvation = -22272.217849 eV Core-core repulsion = 18926.230065 eV Total energy + Delta-G solvation = -3345.987785 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.86383 -39.25287 -38.16055 -36.48870 -32.82713 -32.35970 -31.95559 -29.43034 -28.08057 -27.80992 -26.41294 -25.82248 -25.01482 -21.76061 -20.89200 -19.64567 -18.75545 -17.66535 -17.07558 -16.93157 -16.14257 -15.78224 -15.18944 -14.94847 -14.48925 -14.34420 -14.07379 -13.77204 -13.64022 -13.42247 -13.27945 -12.59181 -12.53082 -12.49971 -12.31558 -12.15486 -12.04749 -11.75839 -11.60431 -11.45863 -11.25839 -10.79697 -10.72149 -10.71557 -10.56100 -10.11448 -9.70617 -9.33645 -8.82359 -8.80642 -8.09564 -7.30418 -6.35861 -4.02364 2.03689 2.33744 2.70593 2.83574 3.25668 3.30154 3.44127 3.79639 4.28767 4.29714 4.45946 4.56744 4.75258 4.77324 4.82300 5.09102 5.13032 5.14021 5.16258 5.24970 5.32442 5.36282 5.42843 5.52558 5.58797 5.59482 5.62112 5.69179 5.73563 5.84293 5.90366 5.99096 6.17091 6.30523 6.58383 6.84177 7.15041 7.26382 7.36834 7.62470 7.68867 7.86555 8.10042 8.25566 8.99802 9.63003 10.72095 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021245 B = 0.003523 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.653635 B = 7945.678364 C = 8890.955630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C -0.126 4.126 4 C 0.109 3.891 5 N -0.653 5.653 6 C 0.543 3.457 7 O -0.517 6.517 8 C -0.085 4.085 9 C -0.036 4.036 10 C -0.188 4.188 11 C -0.076 4.076 12 C -0.217 4.217 13 C 0.161 3.839 14 O -0.220 6.220 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.174 4.174 24 C 0.106 3.894 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.279 0.721 39 H 0.113 0.887 40 H 0.079 0.921 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.006 1.858 -4.586 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.183 4.183 4 C -0.013 4.013 5 N -0.391 5.391 6 C 0.333 3.667 7 O -0.391 6.391 8 C -0.125 4.125 9 C -0.037 4.037 10 C -0.207 4.207 11 C -0.094 4.094 12 C -0.237 4.237 13 C 0.109 3.891 14 O -0.125 6.125 15 C -0.464 4.464 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.193 4.193 24 C -0.018 4.018 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.097 0.903 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -25.160 1.955 -3.978 25.547 hybrid contribution 0.110 0.511 0.049 0.525 sum -25.050 2.467 -3.929 25.475 Atomic orbital electron populations 1.21646 0.92658 1.02290 1.02510 1.22280 0.95800 0.95396 0.97072 1.21515 1.01029 0.93398 1.02336 1.23049 0.88177 0.96408 0.93708 1.49619 1.10498 1.68025 1.10945 1.20362 0.79004 0.75515 0.91850 1.90777 1.64762 1.49836 1.33709 1.20506 0.93967 1.03233 0.94795 1.18672 0.91820 0.93317 0.99864 1.20413 0.96582 0.94176 1.09507 1.20735 0.92529 0.98443 0.97688 1.21296 1.00458 0.92808 1.09098 1.18995 0.87903 0.88914 0.93296 1.83566 1.17528 1.34351 1.77057 1.20767 0.83524 0.95464 1.46596 0.87653 1.24454 0.93893 1.00137 0.95535 1.69653 1.01244 1.36330 1.44808 0.86184 0.77849 0.83316 0.79573 1.19906 1.20822 1.18409 1.19931 0.90300 0.98852 1.10223 1.23205 0.88644 0.96636 0.93280 0.91889 0.91887 0.92103 0.92006 0.91891 0.91919 0.90063 0.90537 0.88472 0.88442 0.87770 0.87137 0.84951 0.91135 0.86859 0.90297 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.59 9.31 37.16 0.35 -0.25 16 2 C -0.10 -0.69 1.54 -153.90 -0.24 -0.93 16 3 C -0.13 -0.89 9.23 37.15 0.34 -0.55 16 4 C 0.11 1.01 7.77 -8.51 -0.07 0.95 16 5 N -0.65 -7.48 3.49 -184.94 -0.65 -8.12 16 6 C 0.54 8.41 8.07 -10.99 -0.09 8.32 16 7 O -0.52 -10.69 16.81 5.55 0.09 -10.60 16 8 C -0.09 -1.17 5.66 -29.04 -0.16 -1.34 16 9 C -0.04 -0.66 4.37 -104.65 -0.46 -1.12 16 10 C -0.19 -3.43 9.70 -39.54 -0.38 -3.81 16 11 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 12 C -0.22 -5.00 9.17 -39.39 -0.36 -5.36 16 13 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 14 O -0.22 -6.08 8.59 0.04 0.00 -6.08 16 15 C -0.39 -11.35 9.95 30.89 0.31 -11.05 16 16 H 0.11 3.14 5.44 -52.49 -0.29 2.86 16 17 C 0.06 1.81 5.49 -17.51 -0.10 1.72 16 18 N -0.88 -26.19 13.96 55.48 0.77 -25.42 16 19 Si 0.91 22.40 28.62 -169.99 -4.86 17.53 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.26 -6.43 7.11 56.52 0.40 -6.02 16 23 C -0.17 -3.72 9.64 -39.39 -0.38 -4.10 16 24 C 0.11 0.76 7.53 -8.41 -0.06 0.69 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.24 8.13 -51.93 -0.42 -0.18 16 27 H 0.06 0.23 7.90 -51.93 -0.41 -0.18 16 28 H 0.06 0.56 7.92 -51.93 -0.41 0.15 16 29 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 30 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 31 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.08 0.81 8.12 -51.93 -0.42 0.38 16 33 H 0.10 1.06 8.09 -51.93 -0.42 0.64 16 34 H 0.10 1.14 8.08 -51.93 -0.42 0.73 16 35 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 37 H 0.13 3.15 5.64 -52.49 -0.30 2.86 16 38 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.08 0.50 8.12 -51.93 -0.42 0.07 16 41 H 0.08 0.46 7.94 -51.93 -0.41 0.05 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -34.53 347.29 -7.38 -41.91 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.01 Total: 0.54 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -1.96 Total: -15.01 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.13 Total: -33.54 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.09 Total: -16.67 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.86 Total: 17.53 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.53 -7.38 -41.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790229882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.610 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds