Wall clock time and date at job start Tue Mar 31 2020 07:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 113.41051 * 2 1 4 4 C 1.53492 * 114.20463 * 133.20232 * 2 1 3 5 5 N 1.47069 * 88.04954 * 139.68697 * 4 2 1 6 6 C 1.34773 * 136.06245 * 152.88632 * 5 4 2 7 7 O 1.21283 * 120.00039 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00290 * 180.02562 * 6 5 4 9 9 C 1.50700 * 109.47267 * 179.97438 * 8 6 5 10 10 C 1.38319 * 119.96931 * 89.99609 * 9 8 6 11 11 C 1.38272 * 120.13858 * 180.02562 * 10 9 8 12 12 C 1.38128 * 120.07264 * 359.97438 * 11 10 9 13 13 C 1.38853 * 119.92413 * 0.02562 * 12 11 10 14 14 O 1.35756 * 120.06383 * 180.02562 * 13 12 11 15 15 C 1.34827 * 117.00024 * 354.46889 * 14 13 12 16 16 H 1.07996 * 120.00133 * 5.05801 * 15 14 13 17 17 C 1.38660 * 119.99464 * 185.05344 * 15 14 13 18 18 N 1.31560 * 119.99347 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00445 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47127 * 89.99794 * 19 17 15 21 21 H 1.48491 * 109.47298 * 209.99861 * 19 17 15 22 22 H 1.48493 * 109.47144 * 329.99901 * 19 17 15 23 23 C 1.38079 * 119.96154 * 269.72079 * 9 8 6 24 24 C 1.47073 * 87.88037 * 332.84763 * 5 4 2 25 25 H 1.09000 * 109.47423 * 286.79464 * 1 2 3 26 26 H 1.08995 * 109.47257 * 46.79979 * 1 2 3 27 27 H 1.09001 * 109.47101 * 166.80105 * 1 2 3 28 28 H 1.09001 * 109.47185 * 193.20103 * 3 2 1 29 29 H 1.08998 * 109.47648 * 313.20485 * 3 2 1 30 30 H 1.09009 * 109.47447 * 73.20136 * 3 2 1 31 31 H 1.08993 * 113.47641 * 24.87400 * 4 2 1 32 32 H 1.09006 * 113.46457 * 254.49249 * 4 2 1 33 33 H 1.09000 * 109.46600 * 299.99460 * 8 6 5 34 34 H 1.09002 * 109.47095 * 59.99255 * 8 6 5 35 35 H 1.08007 * 119.92952 * 359.97438 * 10 9 8 36 36 H 1.08005 * 119.96414 * 179.97438 * 11 10 9 37 37 H 1.07988 * 120.03577 * 180.02562 * 12 11 10 38 38 H 0.97006 * 119.99774 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.03546 * 0.02562 * 23 9 8 40 40 H 1.09000 * 113.46620 * 141.90335 * 24 5 4 41 41 H 1.08995 * 113.46823 * 272.28068 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1379 1.4040 0.0000 4 6 2.1594 -0.9584 1.0205 5 7 3.1611 -1.3057 0.0013 6 6 4.4344 -1.7474 0.0029 7 8 5.0063 -1.9454 1.0539 8 6 5.1480 -1.9942 -1.3013 9 6 6.5477 -2.4791 -1.0241 10 6 6.7972 -3.8337 -0.8974 11 6 8.0800 -4.2825 -0.6426 12 6 9.1168 -3.3788 -0.5143 13 6 8.8695 -2.0184 -0.6410 14 8 9.8864 -1.1278 -0.5160 15 6 11.0893 -1.6188 -0.1560 16 1 11.2307 -2.6852 -0.0608 17 6 12.1449 -0.7545 0.0918 18 7 13.3188 -1.2337 0.4426 19 14 11.9002 1.0900 -0.0723 20 1 11.4613 1.6491 1.2315 21 1 13.1798 1.7250 -0.4777 22 1 10.8647 1.3623 -1.1013 23 6 7.5808 -1.5710 -0.9027 24 6 2.1614 -0.9599 -1.0206 25 1 -0.3634 0.2969 0.9838 26 1 -0.3633 0.7034 -0.7491 27 1 -0.3633 -1.0005 -0.2347 28 1 3.2004 1.3399 -0.2347 29 1 1.6367 2.0170 -0.7490 30 1 2.0097 1.8555 0.9839 31 1 1.5102 -1.7906 1.2924 32 1 2.5812 -0.4520 1.8888 33 1 4.6084 -2.7487 -1.8736 34 1 5.1916 -1.0670 -1.8728 35 1 5.9881 -4.5423 -0.9968 36 1 8.2716 -5.3408 -0.5437 37 1 10.1184 -3.7300 -0.3157 38 1 14.0572 -0.6291 0.6164 39 1 7.3860 -0.5138 -1.0058 40 1 2.5848 -0.4541 -1.8883 41 1 1.5134 -1.7928 -1.2931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790229882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:05 Heat of formation + Delta-G solvation = -25.350088 kcal Electronic energy + Delta-G solvation = -22273.173809 eV Core-core repulsion = 18926.230065 eV Total energy + Delta-G solvation = -3346.943744 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.70686 -40.91136 -39.45574 -38.16403 -34.50451 -33.81988 -33.15660 -31.13203 -29.28469 -28.29844 -27.35945 -27.04684 -26.61074 -23.39508 -22.53476 -20.68153 -19.68069 -19.41719 -18.85478 -17.94309 -17.06076 -16.94583 -16.75336 -16.50249 -15.88324 -15.68476 -15.30434 -15.08495 -14.92952 -14.72623 -14.36066 -14.16670 -14.04222 -13.94269 -13.17201 -13.02534 -12.96293 -12.84603 -12.64572 -12.53565 -12.49160 -12.40125 -12.27217 -12.00432 -11.94659 -11.34935 -11.15104 -10.95799 -10.84189 -9.72332 -9.69417 -9.10023 -8.52464 -6.25321 0.43720 0.66250 1.27356 1.32726 1.48669 1.61777 1.88687 2.25885 2.74159 2.97342 3.12630 3.21979 3.62238 3.77331 3.92391 4.03263 4.06798 4.24623 4.27817 4.37376 4.48880 4.51780 4.56123 4.61389 4.64240 4.66484 4.81783 4.88512 4.90633 4.96146 5.10152 5.11974 5.14706 5.21217 5.35025 5.36132 5.51591 5.61140 5.68540 5.73607 5.88588 6.21466 6.74268 6.81707 7.16074 7.56125 8.59478 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021245 B = 0.003523 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.653635 B = 7945.678364 C = 8890.955630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.090 4.090 3 C -0.128 4.128 4 C 0.097 3.903 5 N -0.655 5.655 6 C 0.537 3.463 7 O -0.587 6.587 8 C -0.080 4.080 9 C -0.030 4.030 10 C -0.171 4.171 11 C -0.076 4.076 12 C -0.240 4.240 13 C 0.120 3.880 14 O -0.246 6.246 15 C -0.401 4.401 16 H 0.080 0.920 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.971 3.029 20 H -0.269 1.269 21 H -0.262 1.262 22 H -0.262 1.262 23 C -0.182 4.182 24 C 0.106 3.894 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.285 0.715 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.463 2.114 -6.369 31.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.185 4.185 4 C -0.026 4.026 5 N -0.390 5.390 6 C 0.328 3.672 7 O -0.467 6.467 8 C -0.119 4.119 9 C -0.031 4.031 10 C -0.190 4.190 11 C -0.094 4.094 12 C -0.259 4.259 13 C 0.071 3.929 14 O -0.154 6.154 15 C -0.477 4.477 16 H 0.098 0.902 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.793 3.207 20 H -0.195 1.195 21 H -0.186 1.186 22 H -0.187 1.187 23 C -0.201 4.201 24 C -0.015 4.015 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.157 0.843 34 H 0.139 0.861 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.112 0.888 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -29.707 2.206 -5.803 30.349 hybrid contribution 1.144 0.270 0.584 1.313 sum -28.563 2.476 -5.218 29.141 Atomic orbital electron populations 1.21629 0.90328 1.03490 1.03097 1.22205 0.97307 0.94255 0.95345 1.21543 0.99805 0.94351 1.02797 1.23361 0.87946 0.97796 0.93491 1.49696 1.10004 1.65687 1.13579 1.20558 0.80141 0.75157 0.91317 1.90755 1.66696 1.53403 1.35810 1.20584 0.90997 1.05616 0.94712 1.19217 0.93551 0.93120 0.97187 1.20997 0.96906 0.95022 1.06054 1.21122 0.92264 0.99531 0.96510 1.21335 1.00702 0.93199 1.10666 1.19564 0.88563 0.89497 0.95258 1.83504 1.17423 1.35142 1.79365 1.20728 0.84941 0.94730 1.47334 0.90221 1.25287 0.93480 1.04798 0.95278 1.69732 1.02106 1.38065 1.46529 0.85225 0.78402 0.77648 0.79467 1.19453 1.18614 1.18670 1.20245 0.89758 1.00070 1.10027 1.23559 0.87443 0.97635 0.92890 0.91790 0.90645 0.90842 0.94362 0.89922 0.92294 0.88283 0.92827 0.84294 0.86089 0.83497 0.83950 0.87284 0.90512 0.86219 0.88797 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.60 9.31 71.98 0.67 0.07 16 2 C -0.09 -0.90 1.54 -51.79 -0.08 -0.98 16 3 C -0.13 -1.54 9.23 71.98 0.66 -0.88 16 4 C 0.10 1.59 7.77 83.17 0.65 2.24 16 5 N -0.65 -13.17 3.49 -857.43 -3.00 -16.16 16 6 C 0.54 15.50 8.07 87.66 0.71 16.20 16 7 O -0.59 -24.15 16.81 -3.04 -0.05 -24.20 16 8 C -0.08 -1.89 5.66 29.10 0.16 -1.73 16 9 C -0.03 -1.04 4.37 -19.88 -0.09 -1.13 16 10 C -0.17 -5.73 9.70 22.30 0.22 -5.52 16 11 C -0.08 -2.90 10.04 22.25 0.22 -2.68 16 12 C -0.24 -11.51 9.17 22.39 0.21 -11.31 16 13 C 0.12 6.15 6.65 22.58 0.15 6.30 16 14 O -0.25 -14.38 8.59 -22.77 -0.20 -14.57 16 15 C -0.40 -25.00 9.95 67.92 0.68 -24.33 16 16 H 0.08 5.19 5.44 -2.91 -0.02 5.18 16 17 C 0.01 0.59 5.49 84.83 0.47 1.06 16 18 N -0.92 -57.22 13.96 21.62 0.30 -56.92 16 19 Si 0.97 47.58 28.62 68.60 1.96 49.55 16 20 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.26 -12.80 7.11 99.48 0.71 -12.10 16 23 C -0.18 -7.81 9.64 22.39 0.22 -7.59 16 24 C 0.11 1.03 7.53 83.24 0.63 1.66 16 25 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.07 0.22 8.13 -2.39 -0.02 0.21 16 27 H 0.07 0.20 7.90 -2.39 -0.02 0.18 16 28 H 0.04 0.64 7.92 -2.39 -0.02 0.62 16 29 H 0.08 0.67 8.13 -2.39 -0.02 0.65 16 30 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.10 1.29 8.10 -2.39 -0.02 1.28 16 32 H 0.05 1.13 8.12 -2.38 -0.02 1.11 16 33 H 0.14 2.17 8.09 -2.39 -0.02 2.15 16 34 H 0.12 2.34 8.08 -2.39 -0.02 2.32 16 35 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 36 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 37 H 0.11 5.66 5.64 -2.92 -0.02 5.64 16 38 H 0.29 16.14 8.31 -92.70 -0.77 15.37 16 39 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 40 H 0.09 0.70 8.12 -2.39 -0.02 0.68 16 41 H 0.11 0.56 7.94 -2.39 -0.02 0.55 16 Total: -1.00 -81.87 347.29 5.50 -76.37 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.02 Total: 14.55 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 5.47 Total: -28.60 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -2.69 Total: -73.08 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.25 Total: -38.78 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.96 Total: 49.55 kcal Total: -81.87 5.50 -76.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790229882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.018 kcal (2) G-P(sol) polarization free energy of solvation -81.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds