Wall clock time and date at job start Tue Mar 31 2020 07:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 112.94524 * 2 1 4 4 C 1.53953 * 113.74398 * 228.41086 * 2 1 3 5 5 N 1.47932 * 85.99396 * 269.20956 * 4 2 1 6 6 C 1.34772 * 134.50098 * 155.34202 * 5 4 2 7 7 O 1.21280 * 120.00105 * 180.02562 * 6 5 4 8 8 C 1.50707 * 120.00153 * 0.02562 * 6 5 4 9 9 C 1.50697 * 109.47179 * 180.02562 * 8 6 5 10 10 C 1.38302 * 119.92811 * 269.72532 * 9 8 6 11 11 C 1.38108 * 120.06634 * 179.72557 * 10 9 8 12 12 C 1.38876 * 119.92885 * 0.56704 * 11 10 9 13 13 O 1.35747 * 120.06893 * 179.67803 * 12 11 10 14 14 C 1.34829 * 117.00090 * 174.48762 * 13 12 11 15 15 H 1.07999 * 120.00093 * 5.06307 * 14 13 12 16 16 C 1.38661 * 120.00038 * 185.05893 * 14 13 12 17 17 N 1.31549 * 119.99867 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99982 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46998 * 60.00059 * 18 16 14 20 20 H 1.48497 * 109.47019 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46743 * 300.00327 * 18 16 14 22 22 C 1.38876 * 119.86397 * 359.71074 * 12 11 10 23 23 C 1.38104 * 119.92959 * 359.97438 * 22 12 11 24 24 C 1.47578 * 91.00610 * 335.35202 * 5 4 2 25 25 H 1.09005 * 109.47216 * 50.32985 * 1 2 3 26 26 H 1.09000 * 109.47191 * 290.33245 * 1 2 3 27 27 H 1.08999 * 109.47072 * 170.32992 * 1 2 3 28 28 H 1.09005 * 109.47026 * 69.66707 * 3 2 1 29 29 H 1.09001 * 109.47533 * 189.66308 * 3 2 1 30 30 H 1.08996 * 109.47453 * 309.67152 * 3 2 1 31 31 H 1.09004 * 113.76516 * 23.55935 * 4 2 1 32 32 H 1.08994 * 113.76791 * 154.96210 * 4 2 1 33 33 H 1.08998 * 109.47051 * 300.00384 * 8 6 5 34 34 H 1.09001 * 109.46590 * 59.99858 * 8 6 5 35 35 H 1.08000 * 119.96701 * 359.97438 * 10 9 8 36 36 H 1.08001 * 120.03531 * 180.27522 * 11 10 9 37 37 H 0.97001 * 120.00481 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.03757 * 179.97438 * 22 12 11 39 39 H 1.08005 * 119.96414 * 179.97438 * 23 22 12 40 40 H 1.08999 * 113.77358 * 270.34510 * 24 5 4 41 41 H 1.09003 * 113.87022 * 138.95412 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1264 1.4089 0.0000 4 6 2.1498 -0.9354 -1.0540 5 7 2.1268 -1.9708 0.0024 6 6 2.0968 -3.3182 0.0040 7 8 2.0829 -3.9232 1.0550 8 6 2.0804 -4.0731 -1.3003 9 6 2.0466 -5.5540 -1.0231 10 6 3.2294 -6.2603 -0.9012 11 6 3.2018 -7.6165 -0.6416 12 6 1.9847 -8.2731 -0.5147 13 8 1.9543 -9.6072 -0.2660 14 6 0.7455 -10.1605 -0.0409 15 1 -0.1490 -9.5642 -0.1439 16 6 0.6509 -11.4953 0.3226 17 7 1.7404 -12.2216 0.4484 18 14 -1.0239 -12.2621 0.6337 19 1 -1.8486 -12.1662 -0.5976 20 1 -0.8534 -13.6898 1.0047 21 1 -1.7010 -11.5398 1.7405 22 6 0.7987 -7.5621 -0.6434 23 6 0.8330 -6.2049 -0.8965 24 6 2.1498 -0.9355 1.0539 25 1 -0.3634 0.6561 -0.7911 26 1 -0.3633 0.3571 0.9636 27 1 -0.3633 -1.0131 -0.1726 28 1 1.9392 1.8827 0.9637 29 1 3.2010 1.3486 -0.1725 30 1 1.6640 1.9993 -0.7910 31 1 1.4896 -1.1485 -1.8948 32 1 3.1540 -0.6450 -1.3628 33 1 1.1967 -3.7907 -1.8725 34 1 2.9762 -3.8303 -1.8718 35 1 4.1756 -5.7501 -1.0051 36 1 4.1258 -8.1667 -0.5421 37 1 1.6743 -13.1552 0.7031 38 1 -0.1495 -8.0699 -0.5456 39 1 -0.0890 -5.6514 -0.9971 40 1 3.1540 -0.6451 1.3627 41 1 1.4904 -1.1471 1.8956 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790240088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:08 Heat of formation + Delta-G solvation = -9.314316 kcal Electronic energy + Delta-G solvation = -22060.029949 eV Core-core repulsion = 18713.781568 eV Total energy + Delta-G solvation = -3346.248381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.67553 -39.07316 -38.02936 -36.32933 -32.73366 -32.35743 -31.22168 -30.08685 -27.85777 -27.61241 -26.53322 -25.75066 -24.73580 -21.90842 -20.78772 -19.45170 -18.76806 -17.91725 -16.91183 -16.83101 -16.09370 -15.88810 -14.84340 -14.57723 -14.38319 -14.31686 -14.10640 -13.80037 -13.53964 -13.36092 -13.25715 -12.64423 -12.57795 -12.50803 -12.33689 -12.11462 -11.79331 -11.63503 -11.44928 -11.41420 -11.19891 -10.79587 -10.74157 -10.66836 -10.57907 -10.39068 -9.56904 -9.26913 -8.76936 -8.74552 -8.08482 -7.09937 -6.39129 -3.97661 2.28896 2.31739 2.77081 2.88866 3.16726 3.18862 3.21005 3.86412 4.01905 4.34062 4.47045 4.62415 4.75735 4.88478 5.12563 5.13886 5.14619 5.23318 5.26266 5.30313 5.35135 5.39298 5.42795 5.51431 5.58152 5.62001 5.71527 5.71869 5.78934 5.89398 5.94285 5.98207 6.28044 6.48270 6.76929 6.98174 7.11712 7.30393 7.43604 7.50713 7.68076 7.90674 8.06169 8.34938 9.06481 9.77511 10.79051 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034425 B = 0.002848 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.170210 B = 9827.506921 C =10228.219644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 C -0.137 4.137 4 C 0.108 3.892 5 N -0.652 5.652 6 C 0.532 3.468 7 O -0.520 6.520 8 C -0.072 4.072 9 C -0.170 4.170 10 C -0.060 4.060 11 C -0.191 4.191 12 C 0.157 3.843 13 O -0.178 6.178 14 C -0.391 4.391 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.232 4.232 23 C -0.056 4.056 24 C 0.112 3.888 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.270 0.730 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 25.811 -4.405 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.103 4.103 3 C -0.195 4.195 4 C -0.015 4.015 5 N -0.391 5.391 6 C 0.322 3.678 7 O -0.394 6.394 8 C -0.112 4.112 9 C -0.172 4.172 10 C -0.078 4.078 11 C -0.210 4.210 12 C 0.103 3.897 13 O -0.082 6.082 14 C -0.467 4.467 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.251 4.251 23 C -0.075 4.075 24 C -0.011 4.011 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.556 24.774 -3.748 25.062 hybrid contribution -0.792 -0.334 0.186 0.879 sum -1.348 24.440 -3.563 24.735 Atomic orbital electron populations 1.21551 0.92168 1.02464 1.02234 1.22448 0.96760 0.94643 0.96434 1.21711 1.00672 0.94639 1.02436 1.23405 1.00683 0.84744 0.92667 1.50155 1.75306 1.03708 1.09895 1.20797 0.75305 0.79448 0.92280 1.90753 1.48284 1.66556 1.33807 1.20334 1.03610 0.93145 0.94109 1.18652 0.93770 0.92379 1.12356 1.20398 0.96404 0.93147 0.97863 1.20151 0.96016 0.94091 1.10778 1.19373 0.93287 0.84925 0.92127 1.83974 1.32585 1.15435 1.76184 1.21281 0.82846 0.94487 1.48130 0.89158 1.25280 0.99353 0.95429 0.96469 1.70028 1.27742 1.08171 1.43978 0.85788 0.80277 0.78251 0.79149 1.19535 1.20299 1.19510 1.21101 0.98568 0.94555 1.10913 1.20500 0.96001 0.93846 0.97107 1.23215 1.00529 0.84267 0.93047 0.91964 0.91993 0.92068 0.91979 0.92130 0.91980 0.89971 0.89744 0.89258 0.89207 0.87441 0.86527 0.92028 0.85577 0.87877 0.90118 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 9.12 37.15 0.34 -0.50 16 2 C -0.10 -0.67 1.42 -153.58 -0.22 -0.88 16 3 C -0.14 -0.61 9.20 37.16 0.34 -0.27 16 4 C 0.11 0.77 7.74 -2.77 -0.02 0.75 16 5 N -0.65 -7.49 3.47 -177.66 -0.62 -8.10 16 6 C 0.53 8.28 8.05 -10.98 -0.09 8.19 16 7 O -0.52 -10.80 16.76 5.56 0.09 -10.71 16 8 C -0.07 -1.00 5.58 -29.03 -0.16 -1.17 16 9 C -0.17 -3.16 4.38 -104.58 -0.46 -3.62 16 10 C -0.06 -1.17 9.69 -39.61 -0.38 -1.55 16 11 C -0.19 -4.34 9.99 -39.39 -0.39 -4.73 16 12 C 0.16 4.02 6.65 -39.11 -0.26 3.76 16 13 O -0.18 -5.31 9.76 0.06 0.00 -5.31 16 14 C -0.39 -11.35 9.49 30.89 0.29 -11.06 16 15 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 17 N -0.86 -26.05 13.67 55.48 0.76 -25.29 16 18 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 C -0.23 -5.40 9.17 -39.39 -0.36 -5.76 16 23 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 24 C 0.11 1.05 7.98 -2.97 -0.02 1.02 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.51 7.99 -51.93 -0.42 0.10 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.25 7.98 -51.93 -0.41 -0.16 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.08 0.48 7.99 -51.93 -0.41 0.07 16 33 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.09 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 39 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 40 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -35.39 348.49 -7.42 -42.82 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.01 Total: 1.53 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -1.88 Total: -16.32 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.14 Total: -33.40 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.09 Total: -16.02 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.39 -7.42 -42.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790240088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.501 kcal (2) G-P(sol) polarization free energy of solvation -35.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds