Wall clock time and date at job start Tue Mar 31 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38021 * 119.94093 * 2 1 4 4 C 1.38103 * 120.32497 * 179.74003 * 3 2 1 5 5 C 1.50700 * 119.90102 * 180.27589 * 4 3 2 6 6 C 1.39747 * 120.20040 * 0.26130 * 4 3 2 7 7 C 1.47861 * 120.05932 * 179.97438 * 6 4 3 8 8 O 1.21555 * 119.99935 * 6.30259 * 7 6 4 9 9 N 1.34773 * 120.00022 * 186.30099 * 7 6 4 10 10 C 1.46498 * 120.00230 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47374 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46922 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46813 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99810 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00184 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99829 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00444 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46658 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47434 * 120.00199 * 17 15 13 20 20 H 1.48499 * 109.47216 * 240.00406 * 17 15 13 21 21 C 1.39231 * 119.87954 * 359.97438 * 6 4 3 22 22 C 1.39619 * 119.67699 * 0.02562 * 21 6 4 23 23 C 1.47188 * 120.09557 * 179.97438 * 22 21 6 24 24 O 1.21249 * 120.00528 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46892 * 89.99762 * 1 2 3 26 26 H 1.09003 * 109.47091 * 209.99814 * 1 2 3 27 27 H 1.08998 * 109.47379 * 329.99873 * 1 2 3 28 28 H 1.07994 * 119.84089 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.46994 * 96.63956 * 5 4 3 30 30 H 1.08999 * 109.47242 * 216.64417 * 5 4 3 31 31 H 1.08995 * 109.46779 * 336.64610 * 5 4 3 32 32 H 0.97001 * 120.00231 * 359.97438 * 9 7 6 33 33 H 1.09000 * 109.47224 * 299.99852 * 10 9 7 34 34 H 1.09003 * 109.47419 * 59.99700 * 10 9 7 35 35 H 1.09000 * 109.46873 * 300.00127 * 11 10 9 36 36 H 1.08999 * 109.46995 * 60.00040 * 11 10 9 37 37 H 1.09000 * 109.47226 * 299.99636 * 12 11 10 38 38 H 1.08999 * 109.47478 * 60.00061 * 12 11 10 39 39 H 0.96996 * 119.99829 * 179.97438 * 16 15 13 40 40 H 1.08003 * 120.16193 * 180.02562 * 21 6 4 41 41 H 1.08000 * 119.99749 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1960 0.0000 4 6 3.5769 1.2053 0.0054 5 6 4.3193 2.5167 0.0116 6 6 4.2879 0.0022 0.0054 7 6 5.7665 0.0158 0.0106 8 8 6.3642 1.0674 0.1305 9 7 6.4514 -1.1378 -0.1174 10 6 7.9163 -1.1245 -0.1117 11 6 8.4400 -2.5533 -0.2706 12 6 9.9700 -2.5394 -0.2640 13 6 10.4858 -3.9466 -0.4211 14 1 9.7918 -4.7687 -0.5158 15 6 11.8436 -4.1846 -0.4440 16 7 12.6887 -3.1836 -0.3282 17 14 12.4831 -5.9290 -0.6381 18 1 11.3369 -6.8670 -0.7473 19 1 13.3137 -6.0181 -1.8658 20 1 13.3068 -6.2887 0.5440 21 6 3.6016 -1.2091 0.0005 22 6 2.2054 -1.2126 -0.0050 23 6 1.4705 -2.4879 -0.0108 24 8 2.0775 -3.5375 -0.0113 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6524 2.1292 0.0004 29 1 4.5977 2.7717 1.0341 30 1 5.2183 2.4282 -0.5984 31 1 3.6789 3.2986 -0.3962 32 1 5.9744 -1.9771 -0.2127 33 1 8.2773 -0.5110 -0.9371 34 1 8.2723 -0.7103 0.8316 35 1 8.0790 -3.1665 0.5551 36 1 8.0842 -2.9679 -1.2138 37 1 10.3313 -1.9261 -1.0894 38 1 10.3255 -2.1249 0.6794 39 1 13.6440 -3.3511 -0.3440 40 1 4.1465 -2.1416 0.0009 41 1 0.3905 -2.4887 -0.0146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793427127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:10 Heat of formation + Delta-G solvation = -66.719535 kcal Electronic energy + Delta-G solvation = -21741.073320 eV Core-core repulsion = 18392.335662 eV Total energy + Delta-G solvation = -3348.737658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.77295 -39.39632 -38.19819 -35.58044 -33.88633 -33.54401 -32.46202 -31.05512 -28.31370 -28.05015 -26.45610 -24.23202 -23.28432 -22.42883 -21.04249 -20.72090 -19.72458 -17.97861 -16.83037 -16.30274 -15.95255 -15.51478 -15.36572 -15.11609 -14.84874 -14.73150 -14.41372 -14.14325 -14.11385 -13.77144 -13.51001 -13.16006 -12.88430 -12.31836 -12.19247 -12.10756 -11.89101 -11.84245 -11.68530 -11.65876 -10.91441 -10.72761 -10.55997 -10.16020 -9.87345 -9.73267 -9.35291 -9.24608 -9.10659 -9.09823 -8.73482 -8.36962 -6.01485 -4.04350 0.21932 0.67201 1.98756 2.84566 3.28298 3.30899 3.38474 3.42736 3.57269 3.82263 4.21622 4.32376 4.44922 4.46307 4.74413 4.77637 4.89061 5.06447 5.14529 5.21637 5.34510 5.40221 5.46378 5.52590 5.64954 5.72496 5.76477 5.80190 5.89951 5.99916 6.14963 6.24868 6.42399 6.51392 6.59101 6.81858 6.99638 7.06182 7.63642 7.64105 7.75975 7.97406 8.29160 8.39088 9.02536 9.60000 11.09896 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021434 B = 0.002921 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.025556 B = 9582.138299 C =10845.808697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.010 4.010 3 C -0.148 4.148 4 C 0.015 3.985 5 C -0.128 4.128 6 C -0.155 4.155 7 C 0.552 3.448 8 O -0.534 6.534 9 N -0.720 5.720 10 C 0.117 3.883 11 C -0.122 4.122 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.018 4.018 22 C -0.212 4.212 23 C 0.380 3.620 24 O -0.456 6.456 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.398 0.602 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.260 0.740 40 H 0.138 0.862 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.636 9.222 0.551 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.010 4.010 3 C -0.166 4.166 4 C 0.014 3.986 5 C -0.184 4.184 6 C -0.158 4.158 7 C 0.339 3.661 8 O -0.413 6.413 9 N -0.371 5.371 10 C -0.005 4.005 11 C -0.160 4.160 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.036 4.036 22 C -0.213 4.213 23 C 0.238 3.762 24 O -0.328 6.328 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.153 0.847 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.233 0.767 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.156 0.844 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -26.649 9.425 0.641 28.274 hybrid contribution 0.230 -1.261 -0.121 1.288 sum -26.420 8.164 0.520 27.657 Atomic orbital electron populations 1.21014 0.90345 1.03792 1.03373 1.20285 0.96241 0.92064 0.92450 1.20916 0.93146 0.97929 1.04634 1.20344 0.93362 0.95228 0.89694 1.21205 1.01237 0.91691 1.04228 1.19898 0.93728 0.93555 1.08610 1.18155 0.86529 0.84251 0.77177 1.90721 1.70439 1.30207 1.49970 1.46196 1.08808 1.08838 1.73217 1.21695 0.76706 0.99998 1.02148 1.21910 1.00834 0.92383 1.00909 1.19031 0.87250 0.97408 0.97661 1.21248 0.91624 0.93095 1.50003 0.92566 1.25031 0.97119 0.97048 0.95297 1.69976 1.02278 1.30629 1.50456 0.86524 0.78913 0.84818 0.77682 1.19721 1.20996 1.20988 1.21617 0.93516 0.97683 0.90834 1.20621 0.94296 0.95716 1.10673 1.24079 0.95058 0.86520 0.70509 1.90561 1.73381 1.34470 1.34415 0.89895 0.90702 0.90467 0.84718 0.90037 0.87990 0.92184 0.76716 0.91511 0.91514 0.92648 0.92652 0.96245 0.96240 0.92986 0.84391 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.45 9.50 36.01 0.34 -0.11 16 2 C -0.01 -0.07 5.93 -104.07 -0.62 -0.69 16 3 C -0.15 -1.19 9.29 -39.71 -0.37 -1.55 16 4 C 0.01 0.16 5.92 -104.11 -0.62 -0.46 16 5 C -0.13 -1.34 8.71 36.01 0.31 -1.03 16 6 C -0.15 -1.93 5.87 -105.03 -0.62 -2.54 16 7 C 0.55 8.44 7.70 -12.32 -0.09 8.35 16 8 O -0.53 -9.50 13.32 5.32 0.07 -9.43 16 9 N -0.72 -10.88 5.50 -61.24 -0.34 -11.22 16 10 C 0.12 2.09 5.67 -4.04 -0.02 2.06 16 11 C -0.12 -2.45 5.27 -26.73 -0.14 -2.59 16 12 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 13 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 14 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 17 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 C -0.02 -0.20 9.07 -38.70 -0.35 -0.55 16 22 C -0.21 -1.93 5.86 -105.11 -0.62 -2.55 16 23 C 0.38 3.15 10.88 34.37 0.37 3.53 16 24 O -0.46 -5.69 17.16 5.58 0.10 -5.59 16 25 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.17 6.32 -51.93 -0.33 -0.16 16 27 H 0.08 0.20 8.08 -51.93 -0.42 -0.22 16 28 H 0.13 0.74 8.05 -52.49 -0.42 0.31 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.33 5.84 -51.93 -0.30 1.02 16 31 H 0.06 0.47 8.03 -51.93 -0.42 0.05 16 32 H 0.40 5.18 6.54 -40.82 -0.27 4.91 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 40 H 0.14 1.52 6.03 -52.48 -0.32 1.21 16 41 H 0.11 0.43 6.35 -52.49 -0.33 0.10 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -34.00 345.78 -7.94 -41.94 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.73 Total: -0.16 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.96 Total: -11.18 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.40 Total: -37.52 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.17 Total: -15.03 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.00 -7.94 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793427127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.784 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds