Wall clock time and date at job start Tue Mar 31 2020 06:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20761 * 120.00141 * 2 1 4 4 C 1.50704 * 119.99846 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47004 * 179.97438 * 4 2 1 6 6 C 1.50700 * 109.46688 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00350 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99602 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00240 * 4.74832 * 8 6 5 10 10 C 1.50697 * 109.46906 * 269.99669 * 9 8 6 11 11 H 1.08004 * 120.00315 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00353 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99420 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00378 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46889 * 59.99994 * 14 12 10 16 16 H 1.48501 * 109.47074 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46838 * 300.00052 * 14 12 10 18 18 C 1.39921 * 120.00051 * 184.73635 * 8 6 5 19 19 C 1.38880 * 120.06637 * 67.90141 * 18 8 6 20 20 C 1.38112 * 119.92591 * 180.29734 * 19 18 8 21 21 C 1.38279 * 120.07227 * 359.46855 * 20 19 18 22 22 C 1.50699 * 119.93129 * 180.27773 * 21 20 19 23 23 C 1.38280 * 120.14278 * 0.50982 * 21 20 19 24 24 C 1.38114 * 120.06964 * 359.76678 * 23 21 20 25 25 H 1.08999 * 109.47159 * 240.00348 * 1 2 3 26 26 H 1.09008 * 109.46805 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47423 * 119.99994 * 1 2 3 28 28 H 1.08993 * 109.46918 * 59.99914 * 4 2 1 29 29 H 1.08999 * 109.46957 * 299.99714 * 4 2 1 30 30 H 1.09006 * 109.46987 * 60.00162 * 5 4 2 31 31 H 1.08999 * 109.47271 * 299.99816 * 5 4 2 32 32 H 1.08998 * 109.47136 * 29.98982 * 9 8 6 33 33 H 1.08997 * 109.47384 * 149.99417 * 9 8 6 34 34 H 0.97011 * 119.99942 * 179.97438 * 13 12 10 35 35 H 1.07999 * 120.03317 * 0.02829 * 19 18 8 36 36 H 1.08000 * 119.95987 * 179.70093 * 20 19 18 37 37 H 1.08997 * 109.47146 * 270.23432 * 22 21 20 38 38 H 1.09004 * 109.47265 * 30.23327 * 22 21 20 39 39 H 1.08997 * 109.47241 * 150.23012 * 22 21 20 40 40 H 1.08000 * 119.96877 * 179.74213 * 23 21 20 41 41 H 1.08001 * 120.04195 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 6 4.5181 -2.3308 -0.0011 7 8 3.9117 -3.3811 -0.0011 8 7 5.8659 -2.3308 -0.0020 9 6 6.5986 -1.0664 0.1020 10 6 6.8488 -0.5159 -1.2784 11 1 6.4977 -1.0543 -2.1463 12 6 7.5261 0.6750 -1.4334 13 7 7.9541 1.3303 -0.3765 14 14 7.8370 1.3570 -3.1445 15 1 6.5393 1.5908 -3.8274 16 1 8.5795 2.6387 -3.0391 17 1 8.6399 0.3832 -3.9270 18 6 6.5654 -3.5384 -0.1020 19 6 6.5209 -4.2728 -1.2799 20 6 7.2075 -5.4675 -1.3733 21 6 7.9476 -5.9272 -0.2995 22 6 8.7006 -7.2281 -0.4071 23 6 7.9944 -5.1982 0.8745 24 6 7.3054 -4.0055 0.9764 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0278 0.0005 27 1 -0.3634 -0.5138 -0.8899 28 1 1.9971 -1.8763 -0.8908 29 1 1.9972 -1.8771 0.8892 30 1 4.0284 -0.4542 0.8890 31 1 4.0278 -0.4539 -0.8911 32 1 6.0099 -0.3515 0.6769 33 1 7.5513 -1.2385 0.6027 34 1 8.4310 2.1681 -0.4855 35 1 5.9465 -3.9122 -2.1204 36 1 7.1694 -6.0415 -2.2874 37 1 8.0577 -8.0477 -0.0861 38 1 9.0037 -7.3880 -1.4419 39 1 9.5851 -7.1897 0.2287 40 1 8.5699 -5.5619 1.7129 41 1 7.3419 -3.4366 1.8937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800467415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:42 Heat of formation + Delta-G solvation = -60.708654 kcal Electronic energy + Delta-G solvation = -22730.853729 eV Core-core repulsion = 19382.376722 eV Total energy + Delta-G solvation = -3348.477007 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.00540 -39.18831 -38.09043 -35.21606 -33.00510 -32.48321 -31.36218 -30.54674 -30.01507 -27.49036 -26.32531 -24.44553 -23.09716 -22.11452 -21.11781 -19.35235 -18.64035 -16.88838 -16.71421 -16.14649 -15.63531 -15.13464 -15.04094 -14.92864 -14.64457 -14.32495 -14.04658 -13.82187 -13.51229 -13.04896 -12.82365 -12.72464 -12.32317 -12.15972 -12.10342 -11.93347 -11.73435 -11.63260 -11.30061 -11.21409 -10.99717 -10.83856 -10.71522 -10.66853 -10.19194 -9.83955 -9.47290 -9.21380 -8.56131 -8.50136 -8.44386 -7.59538 -6.17707 -4.25013 1.71995 1.83995 2.14603 3.25352 3.26484 3.30990 3.34742 3.72047 4.15988 4.29408 4.37200 5.02843 5.15203 5.16356 5.17317 5.20209 5.29723 5.37373 5.46668 5.49514 5.57531 5.61433 5.71076 5.81828 5.89856 5.94505 6.06554 6.07379 6.14946 6.25771 6.43373 6.50830 6.64510 6.85588 6.93618 6.97309 7.16455 7.26401 7.64293 7.69635 7.76840 8.02572 8.18402 8.75571 8.92773 9.42313 10.89551 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010074 B = 0.006090 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.728144 B = 4596.680582 C = 6696.067776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.348 3.652 3 O -0.450 6.450 4 C -0.155 4.155 5 C -0.126 4.126 6 C 0.522 3.478 7 O -0.565 6.565 8 N -0.561 5.561 9 C 0.239 3.761 10 C -0.539 4.539 11 H 0.060 0.940 12 C 0.068 3.932 13 N -0.889 5.889 14 Si 0.897 3.103 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.276 1.276 18 C 0.172 3.828 19 C -0.103 4.103 20 C -0.113 4.113 21 C -0.106 4.106 22 C -0.107 4.107 23 C -0.113 4.113 24 C -0.121 4.121 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.119 0.881 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 -9.693 1.545 11.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.223 3.777 3 O -0.324 6.324 4 C -0.193 4.193 5 C -0.165 4.165 6 C 0.312 3.688 7 O -0.445 6.445 8 N -0.288 5.288 9 C 0.120 3.880 10 C -0.577 4.577 11 H 0.079 0.921 12 C -0.136 4.136 13 N -0.527 5.527 14 Si 0.724 3.276 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.201 1.201 18 C 0.081 3.919 19 C -0.123 4.123 20 C -0.131 4.131 21 C -0.106 4.106 22 C -0.164 4.164 23 C -0.132 4.132 24 C -0.141 4.141 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.137 0.863 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.593 -9.445 1.618 11.631 hybrid contribution 0.312 0.590 -0.963 1.172 sum -6.281 -8.855 0.655 10.876 Atomic orbital electron populations 1.22308 0.94820 1.04552 1.04362 1.24684 0.91824 0.90526 0.70671 1.90470 1.71923 1.35062 1.34904 1.21877 0.95225 0.96719 1.05431 1.21416 0.92668 0.95721 1.06704 1.20616 0.81949 0.91035 0.75196 1.90616 1.68263 1.33948 1.51686 1.45982 1.05369 1.07113 1.70346 1.19589 0.92298 0.78009 0.98055 1.21353 1.37556 1.06547 0.92274 0.92142 1.24909 0.95034 0.96413 0.97207 1.69904 1.37622 1.16239 1.28962 0.86563 0.78585 0.78269 0.84151 1.19990 1.21045 1.20128 1.17574 0.94381 0.87077 0.92884 1.21202 0.99242 0.95027 0.96805 1.20797 0.97975 0.96098 0.98268 1.19787 0.99337 0.97170 0.94307 1.20710 0.99170 0.94339 1.02194 1.20763 1.00226 0.94864 0.97301 1.21187 0.98653 0.96251 0.97973 0.89186 0.90306 0.89154 0.88052 0.88179 0.88535 0.87058 0.93765 0.94360 0.92384 0.86325 0.86387 0.91706 0.91916 0.91906 0.86306 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.88 10.26 36.01 0.37 -1.52 16 2 C 0.35 4.80 7.27 -29.03 -0.21 4.59 16 3 O -0.45 -8.22 16.71 6.00 0.10 -8.12 16 4 C -0.15 -2.22 4.93 -27.88 -0.14 -2.35 16 5 C -0.13 -2.32 3.65 -27.88 -0.10 -2.42 16 6 C 0.52 10.81 7.53 -10.99 -0.08 10.73 16 7 O -0.56 -12.31 15.74 5.55 0.09 -12.22 16 8 N -0.56 -12.23 2.51 -114.74 -0.29 -12.51 16 9 C 0.24 5.80 4.88 -5.19 -0.03 5.77 16 10 C -0.54 -14.27 9.16 -34.44 -0.32 -14.58 16 11 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 12 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 13 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 14 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.17 3.55 4.75 -83.69 -0.40 3.15 16 19 C -0.10 -1.99 9.55 -39.39 -0.38 -2.37 16 20 C -0.11 -1.83 9.69 -39.61 -0.38 -2.21 16 21 C -0.11 -1.58 5.88 -104.59 -0.62 -2.20 16 22 C -0.11 -1.19 10.01 36.01 0.36 -0.82 16 23 C -0.11 -1.77 9.69 -39.61 -0.38 -2.15 16 24 C -0.12 -2.22 9.69 -39.39 -0.38 -2.61 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.74 8.12 -51.92 -0.42 0.31 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 1.37 8.10 -51.93 -0.42 0.95 16 29 H 0.10 1.31 8.10 -51.93 -0.42 0.89 16 30 H 0.10 1.81 7.22 -51.93 -0.37 1.43 16 31 H 0.11 2.27 7.87 -51.93 -0.41 1.86 16 32 H 0.04 1.10 6.47 -51.93 -0.34 0.76 16 33 H 0.04 0.98 7.86 -51.93 -0.41 0.58 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 40 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 41 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -31.52 354.17 -7.96 -39.48 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.13 Total: 3.50 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.78 Total: -7.25 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.45 Total: -36.80 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.19 Total: -20.34 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.52 -7.96 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800467415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.226 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds