Wall clock time and date at job start Tue Mar 31 2020 06:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20761 * 120.00141 * 2 1 4 4 C 1.50704 * 119.99846 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47004 * 179.97438 * 4 2 1 6 6 C 1.50700 * 109.46688 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00350 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99602 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00240 * 4.74832 * 8 6 5 10 10 C 1.50697 * 109.46906 * 269.99669 * 9 8 6 11 11 H 1.08004 * 120.00315 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00353 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99420 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00378 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46889 * 59.99994 * 14 12 10 16 16 H 1.48501 * 109.47074 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46838 * 300.00052 * 14 12 10 18 18 C 1.39921 * 120.00051 * 184.73635 * 8 6 5 19 19 C 1.38880 * 120.06637 * 67.90141 * 18 8 6 20 20 C 1.38112 * 119.92591 * 180.29734 * 19 18 8 21 21 C 1.38279 * 120.07227 * 359.46855 * 20 19 18 22 22 C 1.50699 * 119.93129 * 180.27773 * 21 20 19 23 23 C 1.38280 * 120.14278 * 0.50982 * 21 20 19 24 24 C 1.38114 * 120.06964 * 359.76678 * 23 21 20 25 25 H 1.08999 * 109.47159 * 240.00348 * 1 2 3 26 26 H 1.09008 * 109.46805 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47423 * 119.99994 * 1 2 3 28 28 H 1.08993 * 109.46918 * 59.99914 * 4 2 1 29 29 H 1.08999 * 109.46957 * 299.99714 * 4 2 1 30 30 H 1.09006 * 109.46987 * 60.00162 * 5 4 2 31 31 H 1.08999 * 109.47271 * 299.99816 * 5 4 2 32 32 H 1.08998 * 109.47136 * 29.98982 * 9 8 6 33 33 H 1.08997 * 109.47384 * 149.99417 * 9 8 6 34 34 H 0.97011 * 119.99942 * 179.97438 * 13 12 10 35 35 H 1.07999 * 120.03317 * 0.02829 * 19 18 8 36 36 H 1.08000 * 119.95987 * 179.70093 * 20 19 18 37 37 H 1.08997 * 109.47146 * 270.23432 * 22 21 20 38 38 H 1.09004 * 109.47265 * 30.23327 * 22 21 20 39 39 H 1.08997 * 109.47241 * 150.23012 * 22 21 20 40 40 H 1.08000 * 119.96877 * 179.74213 * 23 21 20 41 41 H 1.08001 * 120.04195 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 6 4.5181 -2.3308 -0.0011 7 8 3.9117 -3.3811 -0.0011 8 7 5.8659 -2.3308 -0.0020 9 6 6.5986 -1.0664 0.1020 10 6 6.8488 -0.5159 -1.2784 11 1 6.4977 -1.0543 -2.1463 12 6 7.5261 0.6750 -1.4334 13 7 7.9541 1.3303 -0.3765 14 14 7.8370 1.3570 -3.1445 15 1 6.5393 1.5908 -3.8274 16 1 8.5795 2.6387 -3.0391 17 1 8.6399 0.3832 -3.9270 18 6 6.5654 -3.5384 -0.1020 19 6 6.5209 -4.2728 -1.2799 20 6 7.2075 -5.4675 -1.3733 21 6 7.9476 -5.9272 -0.2995 22 6 8.7006 -7.2281 -0.4071 23 6 7.9944 -5.1982 0.8745 24 6 7.3054 -4.0055 0.9764 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0278 0.0005 27 1 -0.3634 -0.5138 -0.8899 28 1 1.9971 -1.8763 -0.8908 29 1 1.9972 -1.8771 0.8892 30 1 4.0284 -0.4542 0.8890 31 1 4.0278 -0.4539 -0.8911 32 1 6.0099 -0.3515 0.6769 33 1 7.5513 -1.2385 0.6027 34 1 8.4310 2.1681 -0.4855 35 1 5.9465 -3.9122 -2.1204 36 1 7.1694 -6.0415 -2.2874 37 1 8.0577 -8.0477 -0.0861 38 1 9.0037 -7.3880 -1.4419 39 1 9.5851 -7.1897 0.2287 40 1 8.5699 -5.5619 1.7129 41 1 7.3419 -3.4366 1.8937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800467415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:42 Heat of formation + Delta-G solvation = -77.673160 kcal Electronic energy + Delta-G solvation = -22731.589365 eV Core-core repulsion = 19382.376722 eV Total energy + Delta-G solvation = -3349.212643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55345 -40.43413 -39.51278 -36.91185 -34.81362 -34.02718 -32.68633 -31.89002 -31.00767 -29.36435 -27.61876 -25.80201 -24.93550 -23.54682 -22.45371 -20.54688 -20.16812 -18.76264 -18.39843 -17.78417 -17.06014 -16.57224 -16.40203 -16.36192 -15.99670 -15.79581 -15.45028 -15.14904 -14.51695 -14.47532 -14.37751 -14.21964 -13.91653 -13.60122 -13.13665 -13.02896 -12.98405 -12.93386 -12.88499 -12.76774 -12.56394 -12.45598 -12.16200 -12.11696 -12.04677 -11.76261 -10.92844 -10.64621 -10.61668 -10.03535 -9.86350 -9.13500 -8.26192 -6.41210 0.35035 0.48139 1.04518 1.36739 1.38369 1.45702 1.60403 2.13850 2.37158 2.80409 3.04445 3.17033 3.76355 3.92181 3.97337 4.05686 4.08547 4.10723 4.31287 4.47901 4.51589 4.55695 4.62937 4.70016 4.76366 4.83736 4.88573 4.90997 4.93444 5.06250 5.06905 5.15152 5.20345 5.23913 5.40137 5.53834 5.65568 5.67615 5.79174 5.96919 6.15131 6.41828 6.61287 6.69690 7.19774 7.32092 8.79741 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010074 B = 0.006090 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.728144 B = 4596.680582 C = 6696.067776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.354 3.646 3 O -0.505 6.505 4 C -0.150 4.150 5 C -0.120 4.120 6 C 0.519 3.481 7 O -0.575 6.575 8 N -0.563 5.563 9 C 0.257 3.743 10 C -0.547 4.547 11 H 0.052 0.948 12 C 0.021 3.979 13 N -0.919 5.919 14 Si 0.957 3.043 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.270 1.270 18 C 0.128 3.872 19 C -0.126 4.126 20 C -0.113 4.113 21 C -0.098 4.098 22 C -0.105 4.105 23 C -0.110 4.110 24 C -0.138 4.138 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.032 0.968 33 H 0.019 0.981 34 H 0.269 0.731 35 H 0.104 0.896 36 H 0.147 0.853 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.153 0.847 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.977 -11.834 0.956 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.233 3.767 3 O -0.382 6.382 4 C -0.188 4.188 5 C -0.160 4.160 6 C 0.310 3.690 7 O -0.456 6.456 8 N -0.290 5.290 9 C 0.138 3.862 10 C -0.585 4.585 11 H 0.070 0.930 12 C -0.179 4.179 13 N -0.558 5.558 14 Si 0.781 3.219 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.195 1.195 18 C 0.037 3.963 19 C -0.145 4.145 20 C -0.132 4.132 21 C -0.098 4.098 22 C -0.161 4.161 23 C -0.128 4.128 24 C -0.157 4.157 25 H 0.136 0.864 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.165 0.835 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.170 0.830 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.877 -11.622 1.029 13.543 hybrid contribution 0.435 1.110 -0.745 1.406 sum -6.442 -10.512 0.284 12.332 Atomic orbital electron populations 1.22295 0.90409 1.05465 1.06789 1.25223 0.94037 0.89066 0.68386 1.90468 1.73401 1.36535 1.37835 1.21931 0.92141 0.97852 1.06862 1.21349 0.95610 0.94113 1.04915 1.20954 0.81749 0.91613 0.74728 1.90581 1.68218 1.34458 1.52334 1.45887 1.05741 1.06924 1.70459 1.19150 0.91324 0.79023 0.96744 1.21541 1.37405 1.06735 0.92831 0.92967 1.25674 0.94801 0.96670 1.00772 1.70001 1.38325 1.16650 1.30829 0.85623 0.78562 0.77831 0.79842 1.19631 1.20263 1.19500 1.17956 0.96456 0.87331 0.94531 1.21264 1.00567 0.96642 0.96062 1.21159 0.97028 0.94995 0.99970 1.20321 0.97988 0.98327 0.93144 1.20798 0.99498 0.92133 1.03702 1.21182 0.99310 0.93551 0.98797 1.21352 0.99232 0.97682 0.97466 0.86419 0.90242 0.86652 0.86813 0.86377 0.89577 0.89542 0.95050 0.96313 0.92197 0.87812 0.83516 0.89938 0.90519 0.90264 0.82967 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 10.26 71.24 0.73 -2.37 16 2 C 0.35 9.63 7.27 29.10 0.21 9.85 16 3 O -0.51 -19.06 16.71 -1.45 -0.02 -19.09 16 4 C -0.15 -4.29 4.93 29.85 0.15 -4.14 16 5 C -0.12 -4.67 3.65 29.85 0.11 -4.56 16 6 C 0.52 22.45 7.53 87.66 0.66 23.11 16 7 O -0.57 -25.55 15.74 -3.05 -0.05 -25.60 16 8 N -0.56 -25.89 2.51 -635.30 -1.59 -27.48 16 9 C 0.26 13.25 4.88 85.63 0.42 13.67 16 10 C -0.55 -30.17 9.16 25.60 0.23 -29.94 16 11 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 12 C 0.02 1.19 5.46 84.65 0.46 1.65 16 13 N -0.92 -53.19 13.29 21.45 0.28 -52.90 16 14 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 C 0.13 5.46 4.75 38.16 0.18 5.64 16 19 C -0.13 -4.95 9.55 22.39 0.21 -4.74 16 20 C -0.11 -3.50 9.69 22.25 0.22 -3.29 16 21 C -0.10 -2.66 5.88 -19.85 -0.12 -2.78 16 22 C -0.10 -1.86 10.01 71.24 0.71 -1.15 16 23 C -0.11 -3.25 9.69 22.25 0.22 -3.04 16 24 C -0.14 -5.14 9.69 22.39 0.22 -4.92 16 25 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.08 1.32 8.12 -2.38 -0.02 1.30 16 27 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.11 2.99 8.10 -2.39 -0.02 2.97 16 29 H 0.12 2.97 8.10 -2.39 -0.02 2.95 16 30 H 0.09 3.48 7.22 -2.38 -0.02 3.46 16 31 H 0.09 3.78 7.87 -2.39 -0.02 3.76 16 32 H 0.03 1.68 6.47 -2.39 -0.02 1.66 16 33 H 0.02 1.03 7.86 -2.39 -0.02 1.01 16 34 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 35 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 39 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 40 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 41 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -71.33 354.17 6.27 -65.06 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 1.01 Total: 21.10 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 4.61 Total: -7.00 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -1.31 Total: -80.38 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -0.07 Total: -44.69 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -71.33 6.27 -65.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800467415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.615 kcal (2) G-P(sol) polarization free energy of solvation -71.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds