Wall clock time and date at job start Tue Mar 31 2020 06:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38279 * 119.93081 * 2 1 4 4 C 1.38108 * 120.07362 * 179.97438 * 3 2 1 5 5 C 1.38877 * 119.92587 * 0.02562 * 4 3 2 6 6 N 1.39930 * 120.06812 * 179.97438 * 5 4 3 7 7 C 1.46502 * 119.99894 * 7.42093 * 6 5 4 8 8 C 1.50700 * 109.46684 * 274.14508 * 7 6 5 9 9 H 1.07991 * 120.00636 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99693 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00215 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00099 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46912 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47441 * 119.99950 * 12 10 8 15 15 H 1.48506 * 109.47342 * 240.00308 * 12 10 8 16 16 C 1.34777 * 119.99991 * 187.41586 * 6 5 4 17 17 O 1.21286 * 119.99816 * 5.51972 * 16 6 5 18 18 C 1.50693 * 119.99769 * 185.51333 * 16 6 5 19 19 H 1.08995 * 109.47423 * 50.25361 * 18 16 6 20 20 O 1.42905 * 109.46900 * 170.25087 * 18 16 6 21 21 C 1.52997 * 109.47506 * 290.24775 * 18 16 6 22 22 C 1.52998 * 117.50005 * 242.85695 * 21 18 16 23 23 C 1.52998 * 117.50087 * 174.19604 * 21 18 16 24 24 C 1.38874 * 119.86166 * 0.27255 * 5 4 3 25 25 C 1.38117 * 119.92294 * 359.42560 * 24 5 4 26 26 H 1.08992 * 109.47358 * 89.99635 * 1 2 3 27 27 H 1.09008 * 109.46625 * 209.99532 * 1 2 3 28 28 H 1.08998 * 109.47072 * 329.99255 * 1 2 3 29 29 H 1.08001 * 119.96143 * 359.97438 * 3 2 1 30 30 H 1.07997 * 120.03736 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.47126 * 34.14353 * 7 6 5 32 32 H 1.08995 * 109.46847 * 154.14953 * 7 6 5 33 33 H 0.96999 * 120.00420 * 180.02562 * 11 10 8 34 34 H 0.96698 * 114.00029 * 59.99497 * 20 18 16 35 35 H 1.08998 * 115.54776 * 28.52772 * 21 18 16 36 36 H 1.08996 * 117.50002 * 359.97438 * 22 21 18 37 37 H 1.09004 * 117.49726 * 145.02491 * 22 21 18 38 38 H 1.09001 * 117.50056 * 214.98329 * 23 21 18 39 39 H 1.09004 * 117.49809 * 359.97438 * 23 21 18 40 40 H 1.07997 * 120.03403 * 179.72238 * 24 5 4 41 41 H 1.08003 * 119.96218 * 180.29855 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.2739 -0.0001 0.0005 6 7 5.6732 -0.0001 0.0005 7 6 6.4057 1.2581 0.1644 8 6 6.5678 1.9233 -1.1781 9 1 6.1652 1.4561 -2.0645 10 6 7.2302 3.1287 -1.2745 11 7 7.7210 3.6976 -0.1952 12 14 7.4307 3.9538 -2.9384 13 1 6.7943 3.1157 -3.9863 14 1 6.7818 5.2892 -2.9102 15 1 8.8758 4.1119 -3.2417 16 6 6.3471 -1.1575 -0.1501 17 8 5.7448 -2.1836 -0.3856 18 6 7.8488 -1.1766 -0.0262 19 1 8.1438 -0.6736 0.8947 20 8 8.3072 -2.5298 0.0024 21 6 8.4687 -0.4534 -1.2234 22 6 9.3577 -1.2729 -2.1609 23 6 9.9843 -0.2449 -1.2156 24 6 3.5781 -1.2019 -0.0057 25 6 2.1969 -1.1984 0.0001 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6552 2.1327 -0.0004 30 1 4.1163 2.1381 0.0001 31 1 5.8507 1.9173 0.8319 32 1 7.3882 1.0537 0.5896 33 1 8.1867 4.5458 -0.2630 34 1 8.0795 -3.0389 -0.7876 35 1 7.8552 0.3300 -1.6686 36 1 9.5014 -2.3271 -1.9245 37 1 9.3295 -1.0283 -3.2228 38 1 10.3681 0.6754 -1.6558 39 1 10.5399 -0.6226 -0.3571 40 1 4.1164 -2.1381 -0.0103 41 1 1.6551 -2.1327 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824375530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:15 Heat of formation + Delta-G solvation = -24.589467 kcal Electronic energy + Delta-G solvation = -23681.197278 eV Core-core repulsion = 20334.286516 eV Total energy + Delta-G solvation = -3346.910761 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -40.48777 -38.57700 -37.17487 -35.68121 -34.44410 -32.93910 -31.54449 -30.35480 -28.19338 -27.64416 -25.47907 -23.50752 -22.04017 -21.83466 -21.39455 -20.39404 -19.30503 -17.07225 -17.01763 -16.53166 -16.24266 -15.61183 -14.84431 -14.65557 -14.45592 -14.33620 -13.61613 -13.49515 -13.30024 -13.09772 -12.89613 -12.55549 -12.39192 -11.96722 -11.83961 -11.68570 -11.46566 -11.23866 -11.08692 -11.05459 -10.85136 -10.63215 -10.33712 -10.20598 -10.05747 -9.82655 -9.72077 -9.14833 -8.76359 -8.56549 -8.34735 -7.14680 -6.35767 -4.43414 1.79576 2.00080 3.07084 3.11112 3.21440 3.25760 3.54759 4.17366 4.23568 4.41997 4.61567 4.88240 4.97040 5.17825 5.30426 5.34612 5.36658 5.57696 5.59206 5.69077 5.80424 5.85357 5.94542 5.97395 6.01461 6.11394 6.19884 6.27064 6.30553 6.52992 6.54690 6.72708 6.87876 6.95468 6.97964 7.01591 7.15081 7.27708 7.56046 7.74444 7.79940 7.81184 8.04700 8.55507 8.68965 9.22385 10.69797 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.007075 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.513922 B = 3956.711509 C = 5704.438504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.130 4.130 3 C -0.104 4.104 4 C -0.138 4.138 5 C 0.164 3.836 6 N -0.531 5.531 7 C 0.225 3.775 8 C -0.539 4.539 9 H 0.066 0.934 10 C 0.074 3.926 11 N -0.880 5.880 12 Si 0.892 3.108 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.494 3.506 17 O -0.540 6.540 18 C 0.131 3.869 19 H 0.126 0.874 20 O -0.544 6.544 21 C -0.193 4.193 22 C -0.186 4.186 23 C -0.159 4.159 24 C -0.171 4.171 25 C -0.108 4.108 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.117 0.883 30 H 0.141 0.859 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.268 0.732 34 H 0.379 0.621 35 H 0.161 0.839 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.172 0.828 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 -5.490 -0.166 6.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.131 4.131 3 C -0.123 4.123 4 C -0.158 4.158 5 C 0.068 3.932 6 N -0.251 5.251 7 C 0.106 3.894 8 C -0.577 4.577 9 H 0.084 0.916 10 C -0.131 4.131 11 N -0.517 5.517 12 Si 0.719 3.281 13 H -0.195 1.195 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.284 3.716 17 O -0.420 6.420 18 C 0.069 3.931 19 H 0.143 0.857 20 O -0.350 6.350 21 C -0.211 4.211 22 C -0.223 4.223 23 C -0.196 4.196 24 C -0.191 4.191 25 C -0.127 4.127 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.135 0.865 30 H 0.158 0.842 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.228 0.772 35 H 0.178 0.822 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.188 0.812 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.566 -5.661 0.374 6.701 hybrid contribution -0.037 0.752 -1.412 1.600 sum -3.603 -4.910 -1.038 6.178 Atomic orbital electron populations 1.20664 0.92082 1.01860 1.01477 1.19779 0.95434 0.93510 1.04405 1.20740 0.93520 0.97043 1.01012 1.21130 0.93988 0.97832 1.02851 1.18063 0.82814 0.94188 0.98148 1.46048 1.04162 1.10018 1.64846 1.19792 0.92299 0.78843 0.98458 1.21285 1.37437 1.05818 0.93189 0.91601 1.24884 0.94739 0.96566 0.96952 1.69912 1.35930 1.17903 1.27946 0.86510 0.78146 0.79646 0.83761 1.19484 1.20611 1.20598 1.21564 0.91222 0.82815 0.76027 1.90323 1.68715 1.33874 1.49118 1.21267 0.88496 0.83239 1.00127 0.85667 1.86535 1.79261 1.22492 1.46701 1.23684 0.94972 1.03970 0.98510 1.22937 1.05556 0.97254 0.96589 1.22772 0.95121 1.00171 1.01559 1.22473 0.94301 0.99866 1.02412 1.20868 0.93924 0.96812 1.01056 0.92051 0.92292 0.92202 0.86530 0.84166 0.93687 0.93140 0.92232 0.77213 0.82213 0.88855 0.89205 0.88842 0.89160 0.81203 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.01 36.01 0.36 -0.89 16 2 C -0.13 -2.06 5.88 -104.59 -0.62 -2.68 16 3 C -0.10 -1.76 9.69 -39.61 -0.38 -2.15 16 4 C -0.14 -2.69 9.05 -39.39 -0.36 -3.05 16 5 C 0.16 3.38 6.48 -83.69 -0.54 2.84 16 6 N -0.53 -11.13 2.69 -114.74 -0.31 -11.44 16 7 C 0.22 4.99 4.04 -5.19 -0.02 4.97 16 8 C -0.54 -12.80 6.11 -34.44 -0.21 -13.01 16 9 H 0.07 1.64 7.65 -52.49 -0.40 1.24 16 10 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.88 -22.38 13.29 55.43 0.74 -21.64 16 12 Si 0.89 19.37 29.54 -169.99 -5.02 14.35 16 13 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 C 0.49 9.99 6.93 -10.99 -0.08 9.91 16 17 O -0.54 -11.45 12.80 -14.17 -0.18 -11.63 16 18 C 0.13 2.35 2.89 -27.89 -0.08 2.27 16 19 H 0.13 2.24 7.10 -51.93 -0.37 1.87 16 20 O -0.54 -9.09 12.06 -54.95 -0.66 -9.75 16 21 C -0.19 -3.46 4.81 -90.62 -0.44 -3.89 16 22 C -0.19 -2.81 9.70 -26.70 -0.26 -3.07 16 23 C -0.16 -2.56 10.24 -26.70 -0.27 -2.83 16 24 C -0.17 -3.33 8.98 -39.39 -0.35 -3.69 16 25 C -0.11 -1.81 9.69 -39.61 -0.38 -2.20 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.63 8.08 -51.92 -0.42 0.21 16 28 H 0.06 0.64 8.08 -51.93 -0.42 0.23 16 29 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.14 2.90 6.17 -52.49 -0.32 2.57 16 31 H 0.05 1.06 6.79 -51.93 -0.35 0.70 16 32 H 0.05 1.13 5.72 -51.93 -0.30 0.84 16 33 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.38 5.53 7.53 45.56 0.34 5.88 16 35 H 0.16 3.34 4.39 -51.93 -0.23 3.11 16 36 H 0.09 1.26 6.49 -51.93 -0.34 0.92 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.17 3.49 4.69 -55.35 -0.26 3.23 16 41 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 331.35 15.07 4.99 4.99 Total: -1.00 -26.27 331.35 -8.91 -35.17 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -4.74 Total: 15.72 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -3.73 Total: -15.78 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.43 Total: -33.08 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.84 Total: -21.38 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.27 -8.91 -35.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824375530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.585 kcal (2) G-P(sol) polarization free energy of solvation -26.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds