Wall clock time and date at job start Tue Mar 31 2020 06:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38279 * 119.93081 * 2 1 4 4 C 1.38108 * 120.07362 * 179.97438 * 3 2 1 5 5 C 1.38877 * 119.92587 * 0.02562 * 4 3 2 6 6 N 1.39930 * 120.06812 * 179.97438 * 5 4 3 7 7 C 1.46502 * 119.99894 * 7.42093 * 6 5 4 8 8 C 1.50700 * 109.46684 * 274.14508 * 7 6 5 9 9 H 1.07991 * 120.00636 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99693 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00215 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00099 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46912 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47441 * 119.99950 * 12 10 8 15 15 H 1.48506 * 109.47342 * 240.00308 * 12 10 8 16 16 C 1.34777 * 119.99991 * 187.41586 * 6 5 4 17 17 O 1.21286 * 119.99816 * 5.51972 * 16 6 5 18 18 C 1.50693 * 119.99769 * 185.51333 * 16 6 5 19 19 H 1.08995 * 109.47423 * 50.25361 * 18 16 6 20 20 O 1.42905 * 109.46900 * 170.25087 * 18 16 6 21 21 C 1.52997 * 109.47506 * 290.24775 * 18 16 6 22 22 C 1.52998 * 117.50005 * 242.85695 * 21 18 16 23 23 C 1.52998 * 117.50087 * 174.19604 * 21 18 16 24 24 C 1.38874 * 119.86166 * 0.27255 * 5 4 3 25 25 C 1.38117 * 119.92294 * 359.42560 * 24 5 4 26 26 H 1.08992 * 109.47358 * 89.99635 * 1 2 3 27 27 H 1.09008 * 109.46625 * 209.99532 * 1 2 3 28 28 H 1.08998 * 109.47072 * 329.99255 * 1 2 3 29 29 H 1.08001 * 119.96143 * 359.97438 * 3 2 1 30 30 H 1.07997 * 120.03736 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.47126 * 34.14353 * 7 6 5 32 32 H 1.08995 * 109.46847 * 154.14953 * 7 6 5 33 33 H 0.96999 * 120.00420 * 180.02562 * 11 10 8 34 34 H 0.96698 * 114.00029 * 59.99497 * 20 18 16 35 35 H 1.08998 * 115.54776 * 28.52772 * 21 18 16 36 36 H 1.08996 * 117.50002 * 359.97438 * 22 21 18 37 37 H 1.09004 * 117.49726 * 145.02491 * 22 21 18 38 38 H 1.09001 * 117.50056 * 214.98329 * 23 21 18 39 39 H 1.09004 * 117.49809 * 359.97438 * 23 21 18 40 40 H 1.07997 * 120.03403 * 179.72238 * 24 5 4 41 41 H 1.08003 * 119.96218 * 180.29855 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.2739 -0.0001 0.0005 6 7 5.6732 -0.0001 0.0005 7 6 6.4057 1.2581 0.1644 8 6 6.5678 1.9233 -1.1781 9 1 6.1652 1.4561 -2.0645 10 6 7.2302 3.1287 -1.2745 11 7 7.7210 3.6976 -0.1952 12 14 7.4307 3.9538 -2.9384 13 1 6.7943 3.1157 -3.9863 14 1 6.7818 5.2892 -2.9102 15 1 8.8758 4.1119 -3.2417 16 6 6.3471 -1.1575 -0.1501 17 8 5.7448 -2.1836 -0.3856 18 6 7.8488 -1.1766 -0.0262 19 1 8.1438 -0.6736 0.8947 20 8 8.3072 -2.5298 0.0024 21 6 8.4687 -0.4534 -1.2234 22 6 9.3577 -1.2729 -2.1609 23 6 9.9843 -0.2449 -1.2156 24 6 3.5781 -1.2019 -0.0057 25 6 2.1969 -1.1984 0.0001 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6552 2.1327 -0.0004 30 1 4.1163 2.1381 0.0001 31 1 5.8507 1.9173 0.8319 32 1 7.3882 1.0537 0.5896 33 1 8.1867 4.5458 -0.2630 34 1 8.0795 -3.0389 -0.7876 35 1 7.8552 0.3300 -1.6686 36 1 9.5014 -2.3271 -1.9245 37 1 9.3295 -1.0283 -3.2228 38 1 10.3681 0.6754 -1.6558 39 1 10.5399 -0.6226 -0.3571 40 1 4.1164 -2.1381 -0.0103 41 1 1.6551 -2.1327 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824375530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:14 Heat of formation + Delta-G solvation = -37.774072 kcal Electronic energy + Delta-G solvation = -23681.769005 eV Core-core repulsion = 20334.286516 eV Total energy + Delta-G solvation = -3347.482489 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.02976 -39.96784 -38.59053 -37.27717 -35.81578 -34.74365 -32.91692 -31.78316 -29.56142 -29.41831 -26.78012 -25.27757 -23.37689 -23.23663 -22.80011 -21.80213 -20.80396 -18.82048 -18.52439 -18.22427 -17.64418 -17.04974 -16.49606 -16.19859 -15.99596 -15.72365 -14.97512 -14.81876 -14.69319 -14.50603 -14.40558 -14.14710 -13.81271 -13.44417 -13.30453 -12.95455 -12.89391 -12.77544 -12.70180 -12.44232 -12.32574 -12.21819 -11.92735 -11.83003 -11.48134 -11.25144 -11.06163 -10.76562 -10.63460 -10.10238 -9.77900 -8.67857 -8.22735 -6.36205 0.35702 0.56673 1.36443 1.41443 1.48716 1.56068 1.99528 2.37078 2.90452 2.98570 3.04176 3.23868 3.40425 3.81225 4.04540 4.06987 4.11829 4.23282 4.29520 4.45058 4.50678 4.54861 4.60744 4.67366 4.79334 4.89996 4.92838 4.96038 5.04249 5.10308 5.19595 5.25648 5.31057 5.46952 5.50944 5.55324 5.64546 5.75044 5.82570 5.94259 6.28877 6.39034 6.51684 6.71119 7.04681 7.31523 8.80973 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.007075 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.513922 B = 3956.711509 C = 5704.438504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.155 4.155 5 C 0.130 3.870 6 N -0.535 5.535 7 C 0.243 3.757 8 C -0.530 4.530 9 H 0.050 0.950 10 C 0.038 3.962 11 N -0.908 5.908 12 Si 0.944 3.056 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.274 1.274 16 C 0.487 3.513 17 O -0.553 6.553 18 C 0.143 3.857 19 H 0.123 0.877 20 O -0.541 6.541 21 C -0.216 4.216 22 C -0.164 4.164 23 C -0.155 4.155 24 C -0.186 4.186 25 C -0.107 4.107 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.142 0.858 30 H 0.120 0.880 31 H 0.026 0.974 32 H 0.046 0.954 33 H 0.270 0.730 34 H 0.389 0.611 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.159 0.841 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 -6.190 -0.837 7.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.122 4.122 3 C -0.123 4.123 4 C -0.176 4.176 5 C 0.036 3.964 6 N -0.256 5.256 7 C 0.123 3.877 8 C -0.568 4.568 9 H 0.068 0.932 10 C -0.164 4.164 11 N -0.546 5.546 12 Si 0.770 3.230 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.200 1.200 16 C 0.278 3.722 17 O -0.435 6.435 18 C 0.080 3.920 19 H 0.140 0.860 20 O -0.348 6.348 21 C -0.235 4.235 22 C -0.201 4.201 23 C -0.192 4.192 24 C -0.205 4.205 25 C -0.126 4.126 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.160 0.840 30 H 0.137 0.863 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.239 0.761 35 H 0.148 0.852 36 H 0.132 0.868 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.176 0.824 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.719 -6.372 -0.304 7.935 hybrid contribution 0.203 0.917 -1.196 1.521 sum -4.516 -5.455 -1.500 7.239 Atomic orbital electron populations 1.20740 0.88650 1.03580 1.02861 1.20246 0.97813 0.92431 1.01713 1.21075 0.92447 0.98905 0.99884 1.21105 0.95367 0.96649 1.04454 1.18366 0.82734 0.95180 1.00156 1.46000 1.04639 1.09698 1.65236 1.19432 0.91762 0.79152 0.97332 1.21235 1.36752 1.05762 0.93085 0.93217 1.25415 0.94631 0.96996 0.99360 1.69981 1.36891 1.18365 1.29340 0.85706 0.78179 0.78548 0.80542 1.19902 1.20515 1.19958 1.22010 0.92195 0.82400 0.75622 1.90309 1.69295 1.34041 1.49852 1.21081 0.86883 0.83911 1.00097 0.86002 1.86520 1.78942 1.21887 1.47477 1.23421 0.95671 1.04714 0.99679 1.23051 1.02512 0.97971 0.96546 1.22811 0.93544 1.00551 1.02317 1.22455 0.95671 0.98817 1.03583 1.21222 0.92912 0.98660 0.99758 0.90644 0.90535 0.90661 0.84003 0.86251 0.95581 0.93598 0.92086 0.76058 0.85217 0.86809 0.88402 0.89344 0.88048 0.82415 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 10.01 71.24 0.71 -1.31 16 2 C -0.12 -3.53 5.88 -19.84 -0.12 -3.65 16 3 C -0.10 -3.41 9.69 22.25 0.22 -3.20 16 4 C -0.16 -6.23 9.05 22.39 0.20 -6.03 16 5 C 0.13 5.56 6.48 38.15 0.25 5.80 16 6 N -0.54 -23.43 2.69 -635.31 -1.71 -25.14 16 7 C 0.24 11.30 4.04 85.63 0.35 11.65 16 8 C -0.53 -26.07 6.11 25.60 0.16 -25.91 16 9 H 0.05 2.58 7.65 -2.92 -0.02 2.56 16 10 C 0.04 1.89 5.46 84.66 0.46 2.35 16 11 N -0.91 -47.08 13.29 21.45 0.28 -46.79 16 12 Si 0.94 40.15 29.54 68.60 2.03 42.17 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 16 C 0.49 20.24 6.93 87.65 0.61 20.85 16 17 O -0.55 -23.91 12.80 15.81 0.20 -23.71 16 18 C 0.14 5.17 2.89 29.84 0.09 5.26 16 19 H 0.12 4.47 7.10 -2.39 -0.02 4.45 16 20 O -0.54 -17.57 12.06 -130.13 -1.57 -19.14 16 21 C -0.22 -7.76 4.81 -10.80 -0.05 -7.81 16 22 C -0.16 -4.69 9.70 30.62 0.30 -4.39 16 23 C -0.16 -4.86 10.24 30.62 0.31 -4.54 16 24 C -0.19 -7.28 8.98 22.39 0.20 -7.08 16 25 C -0.11 -3.42 9.69 22.25 0.22 -3.20 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.29 8.08 -2.38 -0.02 1.27 16 28 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 29 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.12 5.21 6.17 -2.91 -0.02 5.19 16 31 H 0.03 1.30 6.79 -2.39 -0.02 1.29 16 32 H 0.05 2.16 5.72 -2.39 -0.01 2.15 16 33 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 34 H 0.39 10.83 7.53 -74.06 -0.56 10.28 16 35 H 0.13 5.57 4.39 -2.39 -0.01 5.56 16 36 H 0.11 2.78 6.49 -2.39 -0.02 2.77 16 37 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 40 H 0.16 6.59 4.69 -48.20 -0.23 6.36 16 41 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -57.19 331.35 3.42 -53.77 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: 0.29 Total: 40.06 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 3.89 Total: -21.21 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -1.42 Total: -71.93 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -1.37 Total: -42.85 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Total: -57.19 3.42 -53.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824375530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.992 kcal (2) G-P(sol) polarization free energy of solvation -57.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds