Wall clock time and date at job start Tue Mar 31 2020 06:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38286 * 119.93035 * 2 1 4 4 C 1.38113 * 120.07245 * 180.27944 * 3 2 1 5 5 C 1.38873 * 119.92636 * 359.47282 * 4 3 2 6 6 N 1.39919 * 120.07476 * 180.29795 * 5 4 3 7 7 C 1.46500 * 120.00560 * 235.52901 * 6 5 4 8 8 C 1.50690 * 109.47487 * 89.99218 * 7 6 5 9 9 H 1.08005 * 120.00259 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00306 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99834 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00306 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.47099 * 89.99918 * 12 10 8 14 14 H 1.48503 * 109.47264 * 209.99213 * 12 10 8 15 15 H 1.48494 * 109.47249 * 329.99903 * 12 10 8 16 16 C 1.34783 * 119.99606 * 55.51834 * 6 5 4 17 17 O 1.21281 * 120.00115 * 3.49368 * 16 6 5 18 18 C 1.50700 * 119.99763 * 183.49109 * 16 6 5 19 19 H 1.08993 * 109.47385 * 305.00440 * 18 16 6 20 20 O 1.42899 * 109.47127 * 185.00115 * 18 16 6 21 21 C 1.53002 * 109.47239 * 65.00299 * 18 16 6 22 22 C 1.52999 * 117.50219 * 248.75016 * 21 18 16 23 23 C 1.52999 * 117.50076 * 180.08482 * 21 18 16 24 24 C 1.38876 * 119.85735 * 0.27341 * 5 4 3 25 25 C 1.38110 * 119.93249 * 0.02562 * 24 5 4 26 26 H 1.08999 * 109.46867 * 270.23024 * 1 2 3 27 27 H 1.08998 * 109.46926 * 30.22860 * 1 2 3 28 28 H 1.09000 * 109.47031 * 150.22797 * 1 2 3 29 29 H 1.08000 * 119.96122 * 0.05052 * 3 2 1 30 30 H 1.07991 * 120.03651 * 179.74223 * 4 3 2 31 31 H 1.08997 * 109.47206 * 209.99885 * 7 6 5 32 32 H 1.09008 * 109.46349 * 329.99229 * 7 6 5 33 33 H 0.97003 * 120.00203 * 180.02562 * 11 10 8 34 34 H 0.96701 * 113.99975 * 300.00401 * 20 18 16 35 35 H 1.09003 * 115.55067 * 34.41646 * 21 18 16 36 36 H 1.09006 * 117.49574 * 359.97438 * 22 21 18 37 37 H 1.08994 * 117.50391 * 145.02086 * 22 21 18 38 38 H 1.08997 * 117.49904 * 214.97602 * 23 21 18 39 39 H 1.08999 * 117.49622 * 0.02562 * 23 21 18 40 40 H 1.08006 * 120.03520 * 180.02562 * 24 5 4 41 41 H 1.08001 * 119.96599 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2019 -0.0058 5 6 4.2740 0.0001 -0.0006 6 7 5.6731 -0.0001 -0.0002 7 6 6.4060 -0.7225 -1.0429 8 6 6.6575 0.1976 -2.2095 9 1 6.3062 1.2184 -2.1777 10 6 7.3352 -0.2640 -3.3179 11 7 7.7626 -1.5071 -3.3569 12 14 7.6463 0.8764 -4.7644 13 1 8.9414 1.5775 -4.5724 14 1 7.6943 0.0830 -6.0189 15 1 6.5510 1.8752 -4.8519 16 6 6.3467 0.6647 0.9594 17 8 5.7418 1.2098 1.8582 18 6 7.8517 0.7307 0.9157 19 1 8.2584 -0.2794 0.8681 20 8 8.3343 1.3836 2.0916 21 6 8.2920 1.5165 -0.3211 22 6 8.9937 0.7411 -1.4380 23 6 9.7947 1.6941 -0.5472 24 6 3.5781 -1.2018 0.0047 25 6 2.1970 -1.1984 0.0042 26 1 -0.3633 0.0041 1.0277 27 1 -0.3633 0.8879 -0.5174 28 1 -0.3633 -0.8920 -0.5103 29 1 1.6552 2.1327 0.0008 30 1 4.1163 2.1381 -0.0100 31 1 7.3583 -1.0707 -0.6428 32 1 5.8170 -1.5775 -1.3748 33 1 8.2397 -1.8318 -4.1366 34 1 8.0120 2.2890 2.1991 35 1 7.6385 2.3386 -0.6130 36 1 9.1420 -0.3288 -1.2914 37 1 8.8022 1.0534 -2.4645 38 1 10.1298 2.6329 -0.9883 39 1 10.4697 1.2508 0.1849 40 1 4.1163 -2.1381 0.0092 41 1 1.6552 -2.1327 0.0080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824375537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:21 Heat of formation + Delta-G solvation = -25.388362 kcal Electronic energy + Delta-G solvation = -23909.966692 eV Core-core repulsion = 20563.021288 eV Total energy + Delta-G solvation = -3346.945404 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.23527 -38.58935 -36.87141 -35.77275 -34.40891 -32.88948 -31.53245 -30.56270 -27.88441 -27.55758 -25.41816 -23.53461 -22.09968 -21.59794 -21.23612 -20.56703 -19.15728 -17.14483 -16.83821 -16.37707 -16.07143 -15.14297 -15.07161 -14.59977 -14.49733 -14.25172 -13.66554 -13.46203 -13.28536 -13.06008 -13.00673 -12.48087 -12.40511 -12.09319 -11.71457 -11.47957 -11.40672 -11.27180 -11.18497 -11.03509 -10.72911 -10.41432 -10.28287 -10.08956 -9.94240 -9.61289 -9.28393 -8.98365 -8.68292 -8.51130 -8.44723 -7.47152 -6.28115 -4.24753 1.69916 1.82948 3.10394 3.12763 3.22337 3.25887 3.66764 4.15165 4.23773 4.43363 4.95912 5.03532 5.12781 5.15678 5.18409 5.37947 5.41993 5.55951 5.64584 5.71023 5.80213 5.84499 5.89496 5.96033 6.05667 6.12273 6.20628 6.28484 6.41275 6.59503 6.73296 6.77437 6.89361 6.93671 7.03013 7.11594 7.12281 7.22018 7.56918 7.67785 7.89653 7.93678 8.09547 8.65888 8.81475 9.30766 10.78600 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.006819 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.475103 B = 4104.904262 C = 5407.767566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.111 4.111 3 C -0.110 4.110 4 C -0.108 4.108 5 C 0.172 3.828 6 N -0.550 5.550 7 C 0.236 3.764 8 C -0.521 4.521 9 H 0.061 0.939 10 C 0.072 3.928 11 N -0.886 5.886 12 Si 0.882 3.118 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.494 3.506 17 O -0.553 6.553 18 C 0.133 3.867 19 H 0.120 0.880 20 O -0.544 6.544 21 C -0.174 4.174 22 C -0.091 4.091 23 C -0.206 4.206 24 C -0.126 4.126 25 C -0.109 4.109 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.267 0.733 34 H 0.377 0.623 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.077 2.331 3.753 6.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.111 4.111 3 C -0.128 4.128 4 C -0.128 4.128 5 C 0.080 3.920 6 N -0.277 5.277 7 C 0.117 3.883 8 C -0.559 4.559 9 H 0.080 0.920 10 C -0.131 4.131 11 N -0.524 5.524 12 Si 0.710 3.290 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.283 3.717 17 O -0.432 6.432 18 C 0.071 3.929 19 H 0.137 0.863 20 O -0.348 6.348 21 C -0.193 4.193 22 C -0.127 4.127 23 C -0.243 4.243 24 C -0.146 4.146 25 C -0.128 4.128 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.225 0.775 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.141 0.859 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.919 1.892 4.187 6.731 hybrid contribution -0.108 1.060 -1.190 1.597 sum -5.026 2.953 2.997 6.555 Atomic orbital electron populations 1.20700 0.91669 1.02262 1.01714 1.19770 0.95653 0.93223 1.02470 1.20778 0.93521 0.97267 1.01283 1.21056 0.93988 0.97402 1.00312 1.17646 0.83539 0.93116 0.97669 1.46022 1.03378 1.50539 1.27773 1.19722 0.91842 0.92250 0.84459 1.21265 1.36289 0.98106 1.00279 0.92038 1.24815 0.95549 0.95123 0.97649 1.69889 1.37774 1.14512 1.30270 0.86824 0.78925 0.81054 0.82240 1.19963 1.20975 1.19740 1.21547 0.91268 0.77951 0.80937 1.90641 1.70339 1.46704 1.35523 1.21268 0.89051 0.97814 0.84778 0.86259 1.86531 1.72612 1.32254 1.43385 1.22436 0.94824 1.03765 0.98266 1.23101 0.96701 0.97405 0.95532 1.23214 0.92975 1.02870 1.05229 1.21084 0.94176 0.97344 1.02020 1.20752 0.93435 0.97269 1.01295 0.91757 0.91975 0.91922 0.86449 0.86463 0.93965 0.94187 0.92340 0.77529 0.88519 0.88224 0.88066 0.90007 0.89571 0.85904 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 36.01 0.36 -0.82 16 2 C -0.11 -1.65 5.88 -104.59 -0.62 -2.27 16 3 C -0.11 -1.78 9.69 -39.61 -0.38 -2.16 16 4 C -0.11 -2.06 8.87 -39.39 -0.35 -2.41 16 5 C 0.17 3.50 5.22 -83.70 -0.44 3.06 16 6 N -0.55 -11.56 2.57 -114.74 -0.29 -11.86 16 7 C 0.24 5.24 4.60 -5.20 -0.02 5.22 16 8 C -0.52 -12.23 5.35 -34.45 -0.18 -12.42 16 9 H 0.06 1.51 7.57 -52.48 -0.40 1.11 16 10 C 0.07 1.71 3.47 -17.82 -0.06 1.64 16 11 N -0.89 -22.12 13.28 55.43 0.74 -21.38 16 12 Si 0.88 19.16 27.64 -169.99 -4.70 14.46 16 13 H -0.27 -5.77 6.99 56.52 0.39 -5.38 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 C 0.49 10.31 6.83 -10.98 -0.08 10.23 16 17 O -0.55 -12.55 15.54 -14.30 -0.22 -12.77 16 18 C 0.13 2.49 2.82 -27.88 -0.08 2.41 16 19 H 0.12 2.24 6.78 -51.93 -0.35 1.89 16 20 O -0.54 -9.68 12.90 -55.09 -0.71 -10.39 16 21 C -0.17 -3.20 3.66 -90.62 -0.33 -3.53 16 22 C -0.09 -1.77 5.90 -26.69 -0.16 -1.92 16 23 C -0.21 -3.45 10.16 -26.69 -0.27 -3.72 16 24 C -0.13 -2.30 9.30 -39.39 -0.37 -2.67 16 25 C -0.11 -1.70 9.69 -39.61 -0.38 -2.08 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 28 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.12 2.28 7.96 -52.49 -0.42 1.87 16 31 H 0.04 0.95 4.92 -51.93 -0.26 0.69 16 32 H 0.04 0.95 7.27 -51.92 -0.38 0.58 16 33 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 34 H 0.38 5.80 8.79 45.56 0.40 6.20 16 35 H 0.10 1.85 7.96 -51.93 -0.41 1.44 16 36 H 0.10 2.07 7.03 -51.93 -0.36 1.71 16 37 H 0.10 2.14 3.84 -51.93 -0.20 1.94 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.12 2.14 7.76 -52.48 -0.41 1.73 16 41 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 329.48 15.07 4.97 4.97 Total: -1.00 -26.85 329.48 -8.46 -35.32 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -4.88 Total: 13.08 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -3.36 Total: -11.44 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.44 Total: -33.24 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.93 Total: -23.16 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.70 Total: 14.46 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.85 -8.46 -35.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824375537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.928 kcal (2) G-P(sol) polarization free energy of solvation -26.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds