Wall clock time and date at job start Tue Mar 31 2020 06:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38286 * 119.93035 * 2 1 4 4 C 1.38113 * 120.07245 * 180.27944 * 3 2 1 5 5 C 1.38873 * 119.92636 * 359.47282 * 4 3 2 6 6 N 1.39919 * 120.07476 * 180.29795 * 5 4 3 7 7 C 1.46500 * 120.00560 * 235.52901 * 6 5 4 8 8 C 1.50690 * 109.47487 * 89.99218 * 7 6 5 9 9 H 1.08005 * 120.00259 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00306 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99834 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00306 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.47099 * 89.99918 * 12 10 8 14 14 H 1.48503 * 109.47264 * 209.99213 * 12 10 8 15 15 H 1.48494 * 109.47249 * 329.99903 * 12 10 8 16 16 C 1.34783 * 119.99606 * 55.51834 * 6 5 4 17 17 O 1.21281 * 120.00115 * 3.49368 * 16 6 5 18 18 C 1.50700 * 119.99763 * 183.49109 * 16 6 5 19 19 H 1.08993 * 109.47385 * 305.00440 * 18 16 6 20 20 O 1.42899 * 109.47127 * 185.00115 * 18 16 6 21 21 C 1.53002 * 109.47239 * 65.00299 * 18 16 6 22 22 C 1.52999 * 117.50219 * 248.75016 * 21 18 16 23 23 C 1.52999 * 117.50076 * 180.08482 * 21 18 16 24 24 C 1.38876 * 119.85735 * 0.27341 * 5 4 3 25 25 C 1.38110 * 119.93249 * 0.02562 * 24 5 4 26 26 H 1.08999 * 109.46867 * 270.23024 * 1 2 3 27 27 H 1.08998 * 109.46926 * 30.22860 * 1 2 3 28 28 H 1.09000 * 109.47031 * 150.22797 * 1 2 3 29 29 H 1.08000 * 119.96122 * 0.05052 * 3 2 1 30 30 H 1.07991 * 120.03651 * 179.74223 * 4 3 2 31 31 H 1.08997 * 109.47206 * 209.99885 * 7 6 5 32 32 H 1.09008 * 109.46349 * 329.99229 * 7 6 5 33 33 H 0.97003 * 120.00203 * 180.02562 * 11 10 8 34 34 H 0.96701 * 113.99975 * 300.00401 * 20 18 16 35 35 H 1.09003 * 115.55067 * 34.41646 * 21 18 16 36 36 H 1.09006 * 117.49574 * 359.97438 * 22 21 18 37 37 H 1.08994 * 117.50391 * 145.02086 * 22 21 18 38 38 H 1.08997 * 117.49904 * 214.97602 * 23 21 18 39 39 H 1.08999 * 117.49622 * 0.02562 * 23 21 18 40 40 H 1.08006 * 120.03520 * 180.02562 * 24 5 4 41 41 H 1.08001 * 119.96599 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2019 -0.0058 5 6 4.2740 0.0001 -0.0006 6 7 5.6731 -0.0001 -0.0002 7 6 6.4060 -0.7225 -1.0429 8 6 6.6575 0.1976 -2.2095 9 1 6.3062 1.2184 -2.1777 10 6 7.3352 -0.2640 -3.3179 11 7 7.7626 -1.5071 -3.3569 12 14 7.6463 0.8764 -4.7644 13 1 8.9414 1.5775 -4.5724 14 1 7.6943 0.0830 -6.0189 15 1 6.5510 1.8752 -4.8519 16 6 6.3467 0.6647 0.9594 17 8 5.7418 1.2098 1.8582 18 6 7.8517 0.7307 0.9157 19 1 8.2584 -0.2794 0.8681 20 8 8.3343 1.3836 2.0916 21 6 8.2920 1.5165 -0.3211 22 6 8.9937 0.7411 -1.4380 23 6 9.7947 1.6941 -0.5472 24 6 3.5781 -1.2018 0.0047 25 6 2.1970 -1.1984 0.0042 26 1 -0.3633 0.0041 1.0277 27 1 -0.3633 0.8879 -0.5174 28 1 -0.3633 -0.8920 -0.5103 29 1 1.6552 2.1327 0.0008 30 1 4.1163 2.1381 -0.0100 31 1 7.3583 -1.0707 -0.6428 32 1 5.8170 -1.5775 -1.3748 33 1 8.2397 -1.8318 -4.1366 34 1 8.0120 2.2890 2.1991 35 1 7.6385 2.3386 -0.6130 36 1 9.1420 -0.3288 -1.2914 37 1 8.8022 1.0534 -2.4645 38 1 10.1298 2.6329 -0.9883 39 1 10.4697 1.2508 0.1849 40 1 4.1163 -2.1381 0.0092 41 1 1.6552 -2.1327 0.0080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824375537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:20 Heat of formation + Delta-G solvation = -39.873605 kcal Electronic energy + Delta-G solvation = -23910.594819 eV Core-core repulsion = 20563.021288 eV Total energy + Delta-G solvation = -3347.573531 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.79904 -39.96705 -38.41069 -37.34201 -35.92560 -34.66566 -32.86223 -31.89602 -29.34569 -29.27837 -26.71478 -25.27291 -23.49775 -23.04413 -22.69930 -22.02840 -20.65819 -18.71002 -18.59629 -18.10891 -17.55902 -16.63423 -16.44387 -16.28780 -15.95659 -15.77029 -15.07159 -14.72856 -14.63219 -14.48102 -14.36371 -14.21537 -13.95626 -13.34325 -13.16570 -13.02637 -12.87563 -12.79630 -12.68589 -12.47530 -12.13553 -11.99228 -11.89022 -11.76960 -11.60956 -11.18741 -10.79544 -10.62659 -10.24838 -10.19709 -9.85976 -8.96918 -8.14881 -6.15658 0.33672 0.48194 1.37404 1.43800 1.47301 1.53412 2.08752 2.40547 2.82812 2.96603 3.15306 3.51162 3.56174 3.89888 3.94626 4.05251 4.08993 4.12422 4.36405 4.47769 4.49414 4.50564 4.56969 4.70392 4.83675 4.90888 4.93056 4.95045 5.10685 5.16093 5.21689 5.28867 5.40999 5.51106 5.51783 5.55069 5.68213 5.73245 5.79943 6.07958 6.14001 6.39643 6.57936 6.80142 7.14609 7.42458 8.91055 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.006819 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.475103 B = 4104.904262 C = 5407.767566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.103 4.103 3 C -0.112 4.112 4 C -0.129 4.129 5 C 0.130 3.870 6 N -0.549 5.549 7 C 0.251 3.749 8 C -0.515 4.515 9 H 0.047 0.953 10 C 0.047 3.953 11 N -0.909 5.909 12 Si 0.925 3.075 13 H -0.261 1.261 14 H -0.286 1.286 15 H -0.280 1.280 16 C 0.489 3.511 17 O -0.576 6.576 18 C 0.143 3.857 19 H 0.118 0.882 20 O -0.544 6.544 21 C -0.174 4.174 22 C -0.105 4.105 23 C -0.174 4.174 24 C -0.143 4.143 25 C -0.107 4.107 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.145 0.855 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.020 0.980 33 H 0.267 0.733 34 H 0.388 0.612 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.196 2.903 3.810 7.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.103 4.103 3 C -0.130 4.130 4 C -0.148 4.148 5 C 0.039 3.961 6 N -0.276 5.276 7 C 0.132 3.868 8 C -0.554 4.554 9 H 0.065 0.935 10 C -0.154 4.154 11 N -0.548 5.548 12 Si 0.752 3.248 13 H -0.186 1.186 14 H -0.212 1.212 15 H -0.205 1.205 16 C 0.278 3.722 17 O -0.457 6.457 18 C 0.080 3.920 19 H 0.135 0.865 20 O -0.349 6.349 21 C -0.193 4.193 22 C -0.142 4.142 23 C -0.211 4.211 24 C -0.162 4.162 25 C -0.126 4.126 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.162 0.838 30 H 0.120 0.880 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.237 0.763 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.044 2.474 4.246 7.790 hybrid contribution 0.128 0.878 -1.175 1.473 sum -5.916 3.352 3.071 7.461 Atomic orbital electron populations 1.20785 0.88251 1.03841 1.03199 1.20288 0.98034 0.92262 0.99752 1.21134 0.92399 0.99242 1.00269 1.21110 0.95486 0.96385 1.01866 1.18015 0.83229 0.94454 1.00415 1.45954 1.04097 1.50198 1.27333 1.19410 0.91319 0.91500 0.84567 1.21192 1.36014 0.97400 1.00782 0.93460 1.25208 0.95257 0.95832 0.99092 1.69959 1.38486 1.15605 1.30790 0.86150 0.79041 0.79647 0.79985 1.18617 1.21227 1.20477 1.21945 0.92152 0.77547 0.80509 1.90607 1.71041 1.47769 1.36275 1.21128 0.87550 0.97945 0.85335 0.86456 1.86504 1.72414 1.33157 1.42860 1.22320 0.96164 1.03209 0.97646 1.22845 0.99232 0.96943 0.95148 1.23261 0.91698 1.02527 1.03613 1.21254 0.95635 0.96576 1.02770 1.21164 0.92408 0.99180 0.99799 0.90122 0.90583 0.90276 0.83754 0.88034 0.94337 0.96164 0.92342 0.76250 0.89468 0.89906 0.89632 0.88060 0.88258 0.86157 0.83055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 10.01 71.24 0.71 -1.17 16 2 C -0.10 -2.82 5.88 -19.84 -0.12 -2.94 16 3 C -0.11 -3.48 9.69 22.25 0.22 -3.26 16 4 C -0.13 -5.01 8.87 22.39 0.20 -4.81 16 5 C 0.13 5.44 5.22 38.15 0.20 5.64 16 6 N -0.55 -23.96 2.57 -635.31 -1.63 -25.59 16 7 C 0.25 11.59 4.60 85.63 0.39 11.99 16 8 C -0.52 -24.80 5.35 25.60 0.14 -24.67 16 9 H 0.05 2.39 7.57 -2.91 -0.02 2.37 16 10 C 0.05 2.27 3.47 84.65 0.29 2.56 16 11 N -0.91 -46.03 13.28 21.45 0.28 -45.75 16 12 Si 0.93 39.31 27.64 68.60 1.90 41.21 16 13 H -0.26 -10.50 6.99 99.48 0.70 -9.81 16 14 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 16 C 0.49 20.95 6.83 87.66 0.60 21.55 16 17 O -0.58 -26.75 15.54 15.96 0.25 -26.50 16 18 C 0.14 5.38 2.82 29.85 0.08 5.46 16 19 H 0.12 4.48 6.78 -2.39 -0.02 4.46 16 20 O -0.54 -18.97 12.90 -129.99 -1.68 -20.65 16 21 C -0.17 -6.39 3.66 -10.79 -0.04 -6.43 16 22 C -0.10 -4.07 5.90 30.62 0.18 -3.89 16 23 C -0.17 -5.53 10.16 30.62 0.31 -5.22 16 24 C -0.14 -5.25 9.30 22.39 0.21 -5.04 16 25 C -0.11 -3.16 9.69 22.25 0.22 -2.94 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 28 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 29 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.10 4.14 7.96 -2.92 -0.02 4.12 16 31 H 0.04 1.80 4.92 -2.39 -0.01 1.79 16 32 H 0.02 1.01 7.27 -2.38 -0.02 0.99 16 33 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 34 H 0.39 11.64 8.79 -74.06 -0.65 10.99 16 35 H 0.09 3.37 7.96 -2.39 -0.02 3.35 16 36 H 0.08 3.51 7.03 -2.38 -0.02 3.49 16 37 H 0.09 3.60 3.84 -2.39 -0.01 3.59 16 38 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.12 4.33 7.76 -2.91 -0.02 4.31 16 41 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -58.23 329.48 3.10 -55.14 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.39 Total: 35.30 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 3.59 Total: -13.16 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -1.35 Total: -71.34 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -1.43 Total: -47.14 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.90 Total: 41.21 kcal Total: -58.23 3.10 -55.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824375537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.262 kcal (2) G-P(sol) polarization free energy of solvation -58.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds