Wall clock time and date at job start Tue Mar 31 2020 06:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31687 * 119.71618 * 2 1 4 4 C 1.31934 * 121.88051 * 180.27746 * 3 2 1 5 5 C 1.50704 * 119.45052 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49597 * 163.60195 * 5 4 3 7 7 C 1.53001 * 60.00116 * 252.51175 * 6 5 4 8 8 C 1.38355 * 121.09569 * 0.02562 * 4 3 2 9 9 C 1.38346 * 119.30651 * 359.97438 * 8 4 3 10 10 C 1.39566 * 119.72178 * 180.27360 * 2 1 3 11 11 C 1.47721 * 120.56389 * 359.74347 * 10 2 1 12 12 O 1.21467 * 119.99781 * 353.87461 * 11 10 2 13 13 O 1.34712 * 120.00090 * 173.87284 * 11 10 2 14 14 C 1.45199 * 117.00008 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47049 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47057 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47161 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99610 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00013 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99692 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99959 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47182 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47376 * 119.99821 * 21 19 17 24 24 H 1.48496 * 109.47141 * 240.00319 * 21 19 17 25 25 H 1.09000 * 109.47012 * 262.94062 * 1 2 3 26 26 H 1.08997 * 109.47417 * 22.93704 * 1 2 3 27 27 H 1.09003 * 109.47298 * 142.93974 * 1 2 3 28 28 H 1.08995 * 115.55715 * 309.30984 * 5 4 3 29 29 H 1.09003 * 117.50041 * 359.97438 * 6 5 4 30 30 H 1.09000 * 117.49754 * 145.02442 * 6 5 4 31 31 H 1.08997 * 117.50038 * 252.51316 * 7 6 5 32 32 H 1.08997 * 117.51888 * 107.48052 * 7 6 5 33 33 H 1.08002 * 120.34743 * 180.02562 * 8 4 3 34 34 H 1.08002 * 120.85793 * 180.02562 * 9 8 4 35 35 H 1.08999 * 109.47288 * 299.99692 * 14 13 11 36 36 H 1.08999 * 109.47230 * 59.99799 * 14 13 11 37 37 H 1.08999 * 109.46870 * 300.00004 * 15 14 13 38 38 H 1.08999 * 109.47223 * 59.99851 * 15 14 13 39 39 H 1.09002 * 109.46869 * 300.00093 * 16 15 14 40 40 H 1.08999 * 109.47302 * 59.99807 * 16 15 14 41 41 H 0.97002 * 119.99457 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4781 1.1935 -0.0054 5 6 4.1690 2.5329 -0.0045 6 6 5.6516 2.5627 0.3724 7 6 4.6033 3.1028 1.3473 8 6 4.2369 0.0366 -0.0119 9 6 3.5995 -1.1913 -0.0122 10 6 2.1989 -1.2120 -0.0058 11 6 1.4667 -2.4950 -0.0062 12 8 0.2577 -2.5043 0.1107 13 8 2.1398 -3.6547 -0.1363 14 6 1.3554 -4.8765 -0.1289 15 6 2.2858 -6.0808 -0.2870 16 6 1.4593 -7.3683 -0.2798 17 6 2.3756 -8.5545 -0.4362 18 1 3.4410 -8.4049 -0.5308 19 6 1.8539 -9.8306 -0.4574 20 7 0.5566 -10.0125 -0.3417 21 14 2.9898 -11.3008 -0.6506 22 1 4.3940 -10.8304 -0.7611 23 1 2.8563 -12.1883 0.5325 24 1 2.6222 -12.0525 -1.8773 25 1 -0.3633 -0.1263 1.0199 26 1 -0.3634 0.9464 -0.4005 27 1 -0.3634 -0.8201 -0.6193 28 1 3.8278 3.2385 -0.7619 29 1 6.1271 1.6137 0.6202 30 1 6.2859 3.2880 -0.1371 31 1 4.5480 4.1834 1.4791 32 1 4.3890 2.5092 2.2360 33 1 5.3155 0.0915 -0.0159 34 1 4.1672 -2.1101 -0.0168 35 1 0.8152 -4.9558 0.8145 36 1 0.6439 -4.8566 -0.9544 37 1 2.8257 -6.0014 -1.2306 38 1 2.9976 -6.1009 0.5382 39 1 0.9190 -7.4479 0.6636 40 1 0.7478 -7.3479 -1.1053 41 1 0.1896 -10.9103 -0.3570 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837778865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:33 Heat of formation + Delta-G solvation = -42.394548 kcal Electronic energy + Delta-G solvation = -21569.014296 eV Core-core repulsion = 18221.331448 eV Total energy + Delta-G solvation = -3347.682848 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14611 -39.82315 -37.52239 -36.47625 -34.07658 -33.22217 -32.45669 -31.65981 -28.25315 -27.09419 -25.68719 -23.43036 -23.19881 -22.29050 -21.72715 -20.66497 -20.32120 -17.87424 -17.35380 -16.70724 -16.39475 -16.27112 -16.02265 -15.37172 -14.71735 -14.57427 -14.48354 -13.85366 -13.76758 -13.33507 -13.03154 -12.70318 -12.40080 -12.22081 -12.14774 -12.08063 -11.88931 -11.81203 -11.09911 -11.00819 -10.92893 -10.68068 -10.62742 -10.43913 -10.29567 -10.10743 -9.79627 -9.76181 -9.50344 -9.17354 -9.13790 -8.41354 -6.05845 -4.08888 0.27847 0.92072 2.45737 2.73643 3.21476 3.28468 3.36000 3.40060 3.48530 3.74385 4.27717 4.40252 4.41503 4.44026 4.47998 4.64188 4.67404 4.84772 5.15375 5.18297 5.28317 5.30296 5.37772 5.51071 5.54045 5.56445 5.59722 5.63616 5.64279 5.72404 5.89658 5.97053 6.01355 6.26668 6.48805 6.50085 6.79336 6.94447 7.57747 7.61233 7.68333 7.83344 7.92498 8.33304 8.97543 9.55562 11.05627 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028868 B = 0.002523 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.694470 B =11095.870810 C =11959.226533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.199 3.801 3 N -0.487 5.487 4 C 0.192 3.808 5 C -0.114 4.114 6 C -0.172 4.172 7 C -0.159 4.159 8 C -0.193 4.193 9 C -0.010 4.010 10 C -0.183 4.183 11 C 0.508 3.492 12 O -0.500 6.500 13 O -0.354 6.354 14 C 0.069 3.931 15 C -0.109 4.109 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.783 25.980 1.387 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.061 3.939 3 N -0.196 5.196 4 C 0.054 3.946 5 C -0.133 4.133 6 C -0.209 4.209 7 C -0.197 4.197 8 C -0.212 4.212 9 C -0.035 4.035 10 C -0.186 4.186 11 C 0.352 3.648 12 O -0.390 6.390 13 O -0.270 6.270 14 C -0.003 4.003 15 C -0.147 4.147 16 C -0.014 4.014 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.143 0.857 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.162 0.838 34 H 0.172 0.828 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.808 26.549 1.424 27.446 hybrid contribution 0.903 -1.774 -0.098 1.993 sum 7.712 24.775 1.326 25.982 Atomic orbital electron populations 1.21097 0.87242 1.04093 1.04474 1.21519 0.97603 0.86080 0.88673 1.67411 1.09143 1.28253 1.14838 1.20614 0.89149 0.93890 0.90946 1.20838 0.96452 0.94823 1.01152 1.23136 0.90839 1.03646 1.03269 1.22985 1.02329 1.01445 0.92927 1.21937 1.01963 0.92139 1.05201 1.21992 0.93035 0.99278 0.89238 1.20074 0.94540 0.92205 1.11805 1.20784 0.85860 0.84592 0.73533 1.90788 1.14829 1.87816 1.45549 1.86528 1.42598 1.15278 1.82614 1.23559 0.94713 0.79718 1.02344 1.21774 0.98483 0.92549 1.01844 1.19059 0.95205 0.89358 0.97730 1.21199 0.93643 0.90876 1.50203 0.92388 1.25036 0.95098 0.99172 0.95224 1.69975 1.11069 1.21957 1.50305 0.86487 0.80958 0.82569 0.77705 1.19683 1.20960 1.20964 0.89562 0.90872 0.87955 0.85689 0.88023 0.87787 0.87926 0.88536 0.83795 0.82840 0.91305 0.91303 0.92118 0.92130 0.96195 0.96188 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 8.86 36.00 0.32 -1.00 16 2 C 0.20 2.57 6.82 -82.16 -0.56 2.01 16 3 N -0.49 -5.98 10.17 -5.41 -0.05 -6.04 16 4 C 0.19 1.96 6.46 -82.50 -0.53 1.43 16 5 C -0.11 -0.86 6.21 -91.77 -0.57 -1.43 16 6 C -0.17 -0.91 9.79 -26.73 -0.26 -1.17 16 7 C -0.16 -0.99 10.23 -26.73 -0.27 -1.26 16 8 C -0.19 -1.79 9.34 -39.50 -0.37 -2.16 16 9 C -0.01 -0.11 9.74 -38.85 -0.38 -0.49 16 10 C -0.18 -2.42 5.89 -104.84 -0.62 -3.04 16 11 C 0.51 7.93 7.83 34.61 0.27 8.20 16 12 O -0.50 -8.56 13.18 -19.24 -0.25 -8.81 16 13 O -0.35 -5.83 9.57 -40.52 -0.39 -6.21 16 14 C 0.07 1.26 5.48 37.16 0.20 1.46 16 15 C -0.11 -2.22 5.53 -26.73 -0.15 -2.36 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 21 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.10 1.32 5.89 -51.93 -0.31 1.02 16 28 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.10 0.49 6.38 -51.93 -0.33 0.16 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.14 0.93 6.23 -52.49 -0.33 0.61 16 34 H 0.15 1.49 7.72 -52.49 -0.41 1.08 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -31.40 348.74 -9.18 -40.58 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.98 Total: -2.52 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -3.47 Total: -12.73 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.68 Total: -31.98 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.64 Total: -15.02 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.40 -9.18 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837778865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.817 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds