Wall clock time and date at job start Tue Mar 31 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 110.66249 * 2 1 4 4 C 1.54707 * 110.74101 * 236.59999 * 2 1 3 5 5 C 1.51678 * 101.90562 * 267.00769 * 4 2 1 6 6 C 1.37300 * 132.06162 * 164.12051 * 5 4 2 7 7 C 1.39812 * 119.85981 * 180.93580 * 6 5 4 8 8 C 1.47599 * 120.26875 * 180.02562 * 7 6 5 9 9 O 1.21579 * 119.99918 * 359.96886 * 8 7 6 10 10 N 1.34779 * 119.99928 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00043 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46964 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.46995 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00257 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00027 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00255 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99895 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47112 * 90.00153 * 17 15 13 19 19 H 1.48504 * 109.47179 * 210.00054 * 17 15 13 20 20 H 1.48503 * 109.47101 * 330.00253 * 17 15 13 21 21 C 1.39763 * 119.46429 * 359.97438 * 7 6 5 22 22 C 1.37470 * 120.20079 * 0.09243 * 21 7 6 23 23 C 1.39182 * 106.99604 * 344.64480 * 5 4 2 24 24 O 1.35990 * 111.17282 * 358.83154 * 23 5 4 25 25 H 1.09000 * 109.46898 * 298.24401 * 1 2 3 26 26 H 1.08996 * 109.47300 * 58.24335 * 1 2 3 27 27 H 1.08998 * 109.47509 * 178.24993 * 1 2 3 28 28 H 1.09000 * 109.47077 * 181.75334 * 3 2 1 29 29 H 1.08997 * 109.47300 * 301.75483 * 3 2 1 30 30 H 1.09003 * 109.47291 * 61.75745 * 3 2 1 31 31 H 1.09000 * 110.94266 * 148.85285 * 4 2 1 32 32 H 1.09004 * 110.94007 * 25.16084 * 4 2 1 33 33 H 1.07998 * 120.07734 * 0.90551 * 6 5 4 34 34 H 0.96999 * 120.00130 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.46660 * 299.99538 * 11 10 8 36 36 H 1.08997 * 109.47002 * 59.99361 * 11 10 8 37 37 H 1.09000 * 109.47263 * 299.99424 * 12 11 10 38 38 H 1.09003 * 109.47570 * 59.99493 * 12 11 10 39 39 H 0.96993 * 120.00068 * 179.97438 * 16 15 13 40 40 H 1.08002 * 119.89610 * 179.80854 * 21 7 6 41 41 H 1.08000 * 119.78177 * 179.71800 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4315 0.0000 4 6 2.0779 -0.7964 -1.2079 5 6 2.2611 -2.1798 -0.6134 6 6 2.4417 -3.4124 -1.1905 7 6 2.5671 -4.5473 -0.3836 8 6 2.7620 -5.8767 -0.9944 9 8 2.8135 -5.9882 -2.2040 10 7 2.8827 -6.9670 -0.2113 11 6 3.0768 -8.2865 -0.8176 12 6 3.1839 -9.3430 0.2838 13 6 3.3829 -10.7004 -0.3398 14 1 3.4280 -10.7997 -1.4143 15 6 3.5073 -11.8156 0.4613 16 7 3.4529 -11.6948 1.7698 17 14 3.7547 -13.4981 -0.3118 18 1 5.2075 -13.7591 -0.4749 19 1 3.1603 -14.5383 0.5657 20 1 3.0930 -13.5343 -1.6407 21 6 2.5074 -4.4125 1.0063 22 6 2.3249 -3.1738 1.5738 23 6 2.2076 -2.0384 0.7702 24 8 2.0392 -0.7363 1.1247 25 1 -0.3633 0.4863 0.9053 26 1 -0.3634 0.5408 -0.8738 27 1 -0.3634 -1.0271 -0.0314 28 1 3.1592 1.4090 -0.0314 29 1 1.6920 1.9623 -0.8738 30 1 1.7430 1.9431 0.9053 31 1 3.0306 -0.3876 -1.5443 32 1 1.3541 -0.8153 -2.0227 33 1 2.4863 -3.5054 -2.2656 34 1 2.8419 -6.8779 0.7537 35 1 2.2292 -8.5181 -1.4626 36 1 3.9928 -8.2837 -1.4083 37 1 4.0317 -9.1112 0.9285 38 1 2.2681 -9.3458 0.8750 39 1 3.5401 -12.4794 2.3333 40 1 2.6003 -5.2849 1.6362 41 1 2.2753 -3.0780 2.6484 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843576233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:59 Heat of formation + Delta-G solvation = -60.264406 kcal Electronic energy + Delta-G solvation = -21883.016709 eV Core-core repulsion = 18534.558966 eV Total energy + Delta-G solvation = -3348.457743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62836 -39.48890 -37.26868 -34.91293 -34.18560 -32.93095 -31.87219 -30.58993 -29.40144 -27.90766 -26.88938 -24.99609 -23.30602 -22.05243 -21.11091 -20.98648 -20.02824 -17.59661 -17.35408 -16.47612 -16.24396 -15.90968 -15.27773 -14.88479 -14.54770 -14.49531 -14.32329 -14.01491 -13.65520 -13.29382 -13.23450 -13.13195 -12.76390 -12.68636 -12.47565 -12.41790 -12.27418 -12.02372 -11.41620 -11.20487 -11.08511 -11.01043 -10.85410 -10.64037 -10.33184 -9.85971 -9.49746 -9.22535 -9.10778 -8.60087 -8.41856 -8.22678 -6.09376 -4.12130 0.79942 1.16424 2.79640 3.03525 3.29788 3.35811 3.39694 3.61997 3.85440 4.05631 4.17452 4.37951 4.42151 4.59700 4.64263 4.87227 4.97447 5.08094 5.09822 5.19105 5.24611 5.26728 5.27750 5.34814 5.47645 5.54291 5.63056 5.75790 5.83868 6.03329 6.16254 6.20864 6.33018 6.34971 6.41007 6.73514 6.89070 6.95252 7.51470 7.61308 7.88801 7.99806 8.27614 8.62566 8.93779 9.52684 11.02270 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.046053 B = 0.002533 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.846576 B =11051.999589 C =11440.318339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.100 3.900 3 C -0.141 4.141 4 C -0.099 4.099 5 C -0.186 4.186 6 C -0.012 4.012 7 C -0.156 4.156 8 C 0.553 3.447 9 O -0.550 6.550 10 N -0.717 5.717 11 C 0.122 3.878 12 C 0.012 3.988 13 C -0.521 4.521 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.050 4.050 22 C -0.146 4.146 23 C 0.128 3.872 24 O -0.295 6.295 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.137 0.863 34 H 0.397 0.603 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.139 0.861 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.612 26.180 -0.885 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.062 3.938 3 C -0.198 4.198 4 C -0.136 4.136 5 C -0.187 4.187 6 C -0.031 4.031 7 C -0.160 4.160 8 C 0.340 3.660 9 O -0.430 6.430 10 N -0.366 5.366 11 C -0.001 4.001 12 C -0.026 4.026 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.068 4.068 22 C -0.164 4.164 23 C 0.081 3.919 24 O -0.209 6.209 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.155 0.845 34 H 0.231 0.769 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.157 0.843 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.533 26.077 -1.380 26.504 hybrid contribution 0.119 -0.996 0.135 1.012 sum -4.414 25.081 -1.245 25.497 Atomic orbital electron populations 1.22207 0.93244 1.03411 1.03231 1.22789 0.94467 0.92922 0.83576 1.21839 1.02064 0.92614 1.03311 1.21879 1.02764 0.90873 0.98066 1.20642 1.08875 0.95305 0.93871 1.20340 0.93076 0.89061 1.00636 1.19945 1.08354 0.94101 0.93568 1.18081 0.77213 0.83991 0.86760 1.90741 1.51584 1.86624 1.14018 1.46260 1.72193 1.08044 1.10133 1.21760 1.00507 0.79800 0.97985 1.19335 0.97831 0.92238 0.93161 1.21048 1.50225 0.91401 0.93324 0.92216 1.25000 0.95071 0.99417 0.94828 1.69950 1.50078 1.30054 1.03222 0.86508 0.78391 0.83406 0.79224 1.20555 1.21173 1.19726 1.21118 0.94867 0.96968 0.93892 1.20173 1.07203 0.89042 1.00016 1.19780 0.94369 0.84863 0.92838 1.86841 1.79564 1.16374 1.38149 0.91238 0.90557 0.91633 0.91337 0.90219 0.91184 0.88950 0.88844 0.84472 0.76873 0.92377 0.92385 0.95886 0.95887 0.92836 0.84346 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 8.84 37.16 0.33 -0.80 16 2 C 0.10 0.80 1.26 -89.73 -0.11 0.69 16 3 C -0.14 -0.80 8.96 37.15 0.33 -0.47 16 4 C -0.10 -0.83 6.19 -26.50 -0.16 -0.99 16 5 C -0.19 -2.15 6.25 -104.13 -0.65 -2.80 16 6 C -0.01 -0.16 9.58 -39.33 -0.38 -0.54 16 7 C -0.16 -2.27 5.88 -104.92 -0.62 -2.89 16 8 C 0.55 9.94 7.77 -12.44 -0.10 9.84 16 9 O -0.55 -11.70 16.36 5.30 0.09 -11.62 16 10 N -0.72 -12.87 5.51 -61.33 -0.34 -13.20 16 11 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 12 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 13 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 17 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.05 -0.61 9.52 -39.29 -0.37 -0.98 16 22 C -0.15 -1.66 10.05 -39.36 -0.40 -2.05 16 23 C 0.13 1.51 6.95 -38.73 -0.27 1.24 16 24 O -0.30 -3.27 10.51 -19.71 -0.21 -3.48 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 28 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.69 7.91 -51.93 -0.41 0.28 16 32 H 0.09 0.65 7.92 -51.93 -0.41 0.24 16 33 H 0.14 1.82 7.66 -52.49 -0.40 1.42 16 34 H 0.40 6.11 6.51 -40.82 -0.27 5.84 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.14 1.44 6.40 -52.49 -0.34 1.10 16 41 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -32.54 344.91 -8.53 -41.07 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.02 Total: 1.27 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -2.97 Total: -10.26 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.40 Total: -38.58 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.12 Total: -15.10 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.54 -8.53 -41.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843576233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.193 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds