Wall clock time and date at job start Tue Mar 31 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 110.66249 * 2 1 4 4 C 1.54707 * 110.74101 * 236.59999 * 2 1 3 5 5 C 1.51678 * 101.90562 * 267.00769 * 4 2 1 6 6 C 1.37300 * 132.06162 * 164.12051 * 5 4 2 7 7 C 1.39812 * 119.85981 * 180.93580 * 6 5 4 8 8 C 1.47599 * 120.26875 * 180.02562 * 7 6 5 9 9 O 1.21579 * 119.99918 * 359.96886 * 8 7 6 10 10 N 1.34779 * 119.99928 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00043 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46964 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.46995 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00257 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00027 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00255 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99895 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47112 * 90.00153 * 17 15 13 19 19 H 1.48504 * 109.47179 * 210.00054 * 17 15 13 20 20 H 1.48503 * 109.47101 * 330.00253 * 17 15 13 21 21 C 1.39763 * 119.46429 * 359.97438 * 7 6 5 22 22 C 1.37470 * 120.20079 * 0.09243 * 21 7 6 23 23 C 1.39182 * 106.99604 * 344.64480 * 5 4 2 24 24 O 1.35990 * 111.17282 * 358.83154 * 23 5 4 25 25 H 1.09000 * 109.46898 * 298.24401 * 1 2 3 26 26 H 1.08996 * 109.47300 * 58.24335 * 1 2 3 27 27 H 1.08998 * 109.47509 * 178.24993 * 1 2 3 28 28 H 1.09000 * 109.47077 * 181.75334 * 3 2 1 29 29 H 1.08997 * 109.47300 * 301.75483 * 3 2 1 30 30 H 1.09003 * 109.47291 * 61.75745 * 3 2 1 31 31 H 1.09000 * 110.94266 * 148.85285 * 4 2 1 32 32 H 1.09004 * 110.94007 * 25.16084 * 4 2 1 33 33 H 1.07998 * 120.07734 * 0.90551 * 6 5 4 34 34 H 0.96999 * 120.00130 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.46660 * 299.99538 * 11 10 8 36 36 H 1.08997 * 109.47002 * 59.99361 * 11 10 8 37 37 H 1.09000 * 109.47263 * 299.99424 * 12 11 10 38 38 H 1.09003 * 109.47570 * 59.99493 * 12 11 10 39 39 H 0.96993 * 120.00068 * 179.97438 * 16 15 13 40 40 H 1.08002 * 119.89610 * 179.80854 * 21 7 6 41 41 H 1.08000 * 119.78177 * 179.71800 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4315 0.0000 4 6 2.0779 -0.7964 -1.2079 5 6 2.2611 -2.1798 -0.6134 6 6 2.4417 -3.4124 -1.1905 7 6 2.5671 -4.5473 -0.3836 8 6 2.7620 -5.8767 -0.9944 9 8 2.8135 -5.9882 -2.2040 10 7 2.8827 -6.9670 -0.2113 11 6 3.0768 -8.2865 -0.8176 12 6 3.1839 -9.3430 0.2838 13 6 3.3829 -10.7004 -0.3398 14 1 3.4280 -10.7997 -1.4143 15 6 3.5073 -11.8156 0.4613 16 7 3.4529 -11.6948 1.7698 17 14 3.7547 -13.4981 -0.3118 18 1 5.2075 -13.7591 -0.4749 19 1 3.1603 -14.5383 0.5657 20 1 3.0930 -13.5343 -1.6407 21 6 2.5074 -4.4125 1.0063 22 6 2.3249 -3.1738 1.5738 23 6 2.2076 -2.0384 0.7702 24 8 2.0392 -0.7363 1.1247 25 1 -0.3633 0.4863 0.9053 26 1 -0.3634 0.5408 -0.8738 27 1 -0.3634 -1.0271 -0.0314 28 1 3.1592 1.4090 -0.0314 29 1 1.6920 1.9623 -0.8738 30 1 1.7430 1.9431 0.9053 31 1 3.0306 -0.3876 -1.5443 32 1 1.3541 -0.8153 -2.0227 33 1 2.4863 -3.5054 -2.2656 34 1 2.8419 -6.8779 0.7537 35 1 2.2292 -8.5181 -1.4626 36 1 3.9928 -8.2837 -1.4083 37 1 4.0317 -9.1112 0.9285 38 1 2.2681 -9.3458 0.8750 39 1 3.5401 -12.4794 2.3333 40 1 2.6003 -5.2849 1.6362 41 1 2.2753 -3.0780 2.6484 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843576233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:58 Heat of formation + Delta-G solvation = -80.127129 kcal Electronic energy + Delta-G solvation = -21883.878022 eV Core-core repulsion = 18534.558966 eV Total energy + Delta-G solvation = -3349.319055 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.45812 -40.84829 -38.32066 -36.64908 -34.90946 -34.85392 -32.86512 -31.84328 -30.95031 -28.39042 -27.80356 -26.71726 -24.63216 -23.01028 -22.80204 -21.84904 -21.29028 -18.83665 -18.48052 -18.22928 -17.28783 -16.74049 -16.61220 -16.46004 -16.42031 -15.40649 -15.33865 -14.93074 -14.83386 -14.71289 -14.30009 -14.21232 -13.94297 -13.59972 -13.43200 -13.21600 -13.19365 -12.95513 -12.91118 -12.67101 -12.53717 -12.25461 -12.09241 -11.81664 -11.69603 -11.65398 -11.47434 -10.99688 -10.60665 -10.11398 -10.03171 -9.24940 -8.24110 -6.34431 -0.25014 0.22669 1.42106 1.42531 1.54025 1.72843 2.11112 2.19984 2.44222 2.73013 3.10680 3.34674 3.45053 3.69867 3.80169 3.82836 3.99089 4.07002 4.15886 4.41585 4.48216 4.49029 4.61941 4.64837 4.72034 4.80205 4.83614 4.86095 4.87901 4.98273 5.08591 5.19281 5.21274 5.24172 5.26168 5.28789 5.44779 5.50005 5.57523 5.78155 6.09256 6.15666 6.56621 6.78483 7.18673 7.34737 8.87781 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.046053 B = 0.002533 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.846576 B =11051.999589 C =11440.318339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 C -0.139 4.139 4 C -0.098 4.098 5 C -0.189 4.189 6 C -0.020 4.020 7 C -0.178 4.178 8 C 0.555 3.445 9 O -0.589 6.589 10 N -0.712 5.712 11 C 0.140 3.860 12 C 0.022 3.978 13 C -0.547 4.547 14 H 0.059 0.941 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.045 4.045 22 C -0.148 4.148 23 C 0.127 3.873 24 O -0.306 6.306 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.409 0.591 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.266 0.734 40 H 0.154 0.846 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 27.727 -0.832 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 C -0.195 4.195 4 C -0.135 4.135 5 C -0.190 4.190 6 C -0.039 4.039 7 C -0.181 4.181 8 C 0.344 3.656 9 O -0.471 6.471 10 N -0.362 5.362 11 C 0.017 3.983 12 C -0.015 4.015 13 C -0.585 4.585 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.565 5.565 17 Si 0.790 3.210 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.063 4.063 22 C -0.166 4.166 23 C 0.081 3.919 24 O -0.220 6.220 25 H 0.092 0.908 26 H 0.118 0.882 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.149 0.851 34 H 0.247 0.753 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.028 0.972 38 H 0.029 0.971 39 H 0.075 0.925 40 H 0.171 0.829 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.859 27.653 -1.305 28.107 hybrid contribution 0.192 -1.332 0.159 1.355 sum -4.668 26.321 -1.146 26.756 Atomic orbital electron populations 1.22229 0.92374 1.02751 1.04595 1.23131 0.95224 0.93709 0.82288 1.21884 1.01919 0.91091 1.04643 1.22026 1.03948 0.88846 0.98680 1.20903 1.07798 0.95980 0.94282 1.20343 0.93607 0.89580 1.00373 1.19689 1.11386 0.92358 0.94698 1.18564 0.75860 0.84952 0.86237 1.90709 1.53398 1.87303 1.15723 1.46048 1.72378 1.06932 1.10877 1.21282 0.99645 0.80780 0.96617 1.19145 0.96459 0.92431 0.93483 1.21461 1.50485 0.92981 0.93592 0.92281 1.25873 0.94596 1.03413 0.95319 1.70052 1.50686 1.31331 1.04476 0.85442 0.78592 0.78503 0.78488 1.19769 1.20488 1.19090 1.21243 0.94087 0.98048 0.92933 1.20419 1.06464 0.88544 1.01198 1.20028 0.93360 0.85488 0.93062 1.86846 1.79502 1.15935 1.39731 0.90847 0.88218 0.93330 0.91604 0.87818 0.90866 0.87796 0.87209 0.85060 0.75348 0.93304 0.93324 0.97163 0.97139 0.92519 0.82871 0.82620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 8.84 71.98 0.64 -1.22 16 2 C 0.09 1.28 1.26 -10.21 -0.01 1.26 16 3 C -0.14 -1.17 8.96 71.98 0.64 -0.53 16 4 C -0.10 -1.44 6.19 30.74 0.19 -1.25 16 5 C -0.19 -4.16 6.25 -19.55 -0.12 -4.28 16 6 C -0.02 -0.53 9.58 22.43 0.21 -0.32 16 7 C -0.18 -5.19 5.88 -20.06 -0.12 -5.31 16 8 C 0.55 20.36 7.77 86.71 0.67 21.03 16 9 O -0.59 -25.82 16.36 -3.96 -0.06 -25.89 16 10 N -0.71 -25.99 5.51 -466.21 -2.57 -28.55 16 11 C 0.14 6.18 5.61 86.38 0.48 6.66 16 12 C 0.02 1.13 5.09 29.85 0.15 1.28 16 13 C -0.55 -30.73 9.11 25.60 0.23 -30.50 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 15 C 0.01 0.38 5.46 84.66 0.46 0.85 16 16 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 17 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 C -0.04 -1.05 9.52 22.46 0.21 -0.83 16 22 C -0.15 -3.14 10.05 22.42 0.23 -2.92 16 23 C 0.13 2.83 6.95 22.82 0.16 2.99 16 24 O -0.31 -6.20 10.51 -93.44 -0.98 -7.18 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.73 8.12 -2.39 -0.02 0.71 16 28 H 0.06 0.61 8.12 -2.39 -0.02 0.59 16 29 H 0.10 0.39 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 31 H 0.10 1.30 7.91 -2.39 -0.02 1.28 16 32 H 0.11 1.26 7.92 -2.38 -0.02 1.24 16 33 H 0.13 3.57 7.66 -2.91 -0.02 3.55 16 34 H 0.41 12.68 6.51 -92.71 -0.60 12.07 16 35 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.15 3.02 6.40 -2.91 -0.02 3.01 16 41 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -70.10 344.91 3.16 -66.94 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.43 Total: 16.01 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 4.04 Total: -13.08 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -2.28 Total: -82.62 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -1.05 Total: -33.07 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -70.10 3.16 -66.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843576233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.185 kcal (2) G-P(sol) polarization free energy of solvation -70.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds