Wall clock time and date at job start Tue Mar 31 2020 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38633 * 119.81536 * 2 1 4 4 C 1.37952 * 120.43242 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.96210 * 179.97438 * 4 3 2 6 6 C 1.38958 * 120.06958 * 0.02562 * 4 3 2 7 7 N 1.38828 * 120.17918 * 179.69987 * 6 4 3 8 8 C 1.40402 * 119.64387 * 359.97059 * 6 4 3 9 9 C 1.47288 * 120.21676 * 179.97438 * 8 6 4 10 10 O 1.21524 * 120.00232 * 6.58416 * 9 8 6 11 11 O 1.34767 * 119.99965 * 186.58715 * 9 8 6 12 12 C 1.45205 * 116.99814 * 185.22090 * 11 9 8 13 13 C 1.53005 * 109.46827 * 175.12268 * 12 11 9 14 14 C 1.50699 * 115.54695 * 185.72496 * 13 12 11 15 15 H 1.08006 * 119.99721 * 144.42982 * 14 13 12 16 16 C 1.37869 * 120.00263 * 324.43028 * 14 13 12 17 17 N 1.31519 * 120.00478 * 167.65455 * 16 14 13 18 18 Si 1.86803 * 120.00246 * 347.65826 * 16 14 13 19 19 H 1.48495 * 109.47193 * 95.75901 * 18 16 14 20 20 H 1.48501 * 109.47513 * 215.76461 * 18 16 14 21 21 H 1.48502 * 109.46843 * 335.76480 * 18 16 14 22 22 C 1.53004 * 117.49881 * 40.05910 * 13 12 11 23 23 C 1.52999 * 117.49756 * 331.39820 * 13 12 11 24 24 C 1.37714 * 119.82079 * 179.97438 * 2 1 3 25 25 H 1.08994 * 109.47350 * 89.99751 * 1 2 3 26 26 H 1.09007 * 109.46477 * 209.99579 * 1 2 3 27 27 H 1.08995 * 109.47222 * 329.98585 * 1 2 3 28 28 H 1.07996 * 119.78437 * 359.97438 * 3 2 1 29 29 H 1.09008 * 109.47164 * 270.02671 * 5 4 3 30 30 H 1.08996 * 109.47006 * 30.02710 * 5 4 3 31 31 H 1.08994 * 109.47088 * 150.02820 * 5 4 3 32 32 H 0.97007 * 120.00108 * 351.78881 * 7 6 4 33 33 H 0.96997 * 120.00166 * 171.79556 * 7 6 4 34 34 H 1.09001 * 109.46634 * 295.11731 * 12 11 9 35 35 H 1.08992 * 109.47313 * 55.12329 * 12 11 9 36 36 H 0.96997 * 120.00573 * 180.02562 * 17 16 14 37 37 H 1.08995 * 117.49946 * 359.97438 * 22 13 12 38 38 H 1.09001 * 117.49910 * 145.02024 * 22 13 12 39 39 H 1.09007 * 117.49273 * 214.97859 * 23 13 12 40 40 H 1.08995 * 117.50519 * 359.97438 * 23 13 12 41 41 H 1.08000 * 120.04408 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2028 0.0000 4 6 3.5758 1.2177 0.0005 5 6 4.3143 2.5313 -0.0001 6 6 4.2849 0.0227 0.0005 7 7 5.6731 0.0350 -0.0052 8 6 3.5899 -1.1973 0.0006 9 6 4.3289 -2.4714 0.0001 10 8 5.5382 -2.4725 0.1202 11 8 3.6640 -3.6359 -0.1337 12 6 4.4406 -4.8565 -0.0090 13 6 3.5040 -6.0650 -0.0675 14 6 4.1520 -7.4021 0.1840 15 1 3.6116 -8.1730 0.7135 16 6 5.4345 -7.6415 -0.2617 17 7 6.0899 -8.7013 0.1589 18 14 6.2415 -6.4604 -1.4631 19 1 7.0796 -5.4892 -0.7150 20 1 7.0937 -7.2231 -2.4103 21 1 5.1927 -5.7297 -2.2189 22 6 2.3503 -6.0167 -1.0713 23 6 2.0690 -5.8712 0.4263 24 6 2.1919 -1.1948 0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3633 0.8898 0.5140 28 1 1.6498 2.1343 -0.0004 29 1 4.4924 2.8476 -1.0279 30 1 3.7166 3.2844 0.5134 31 1 5.2681 2.4121 0.5138 32 1 6.1503 0.8704 -0.1292 33 1 6.1660 -0.7918 0.1147 34 1 5.1600 -4.9144 -0.8258 35 1 4.9711 -4.8538 0.9431 36 1 6.9924 -8.8695 -0.1544 37 1 2.2582 -5.1238 -1.6896 38 1 2.0597 -6.9522 -1.5494 39 1 1.5934 -6.7111 0.9329 40 1 1.7921 -4.8830 0.7934 41 1 1.6497 -2.1288 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849723185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:24 Heat of formation + Delta-G solvation = -30.122953 kcal Electronic energy + Delta-G solvation = -23049.964992 eV Core-core repulsion = 19702.814281 eV Total energy + Delta-G solvation = -3347.150711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59359 -39.17551 -37.18147 -35.69571 -34.88510 -32.76647 -32.29052 -31.08761 -27.98198 -27.32722 -25.84265 -25.42658 -23.74501 -21.38421 -20.85275 -20.38069 -19.16865 -17.54798 -17.13771 -17.03007 -16.80010 -16.01703 -15.83178 -14.76380 -14.45073 -14.26171 -14.10067 -13.87001 -13.51950 -13.37073 -13.33358 -12.85188 -12.70518 -12.62337 -12.15337 -12.06192 -11.89229 -11.67426 -11.24172 -11.15842 -10.82289 -10.47967 -10.43859 -10.42628 -10.17554 -9.75582 -9.51457 -9.26683 -8.92891 -8.71157 -8.34929 -7.52256 -6.27281 -4.21146 0.82356 1.48065 2.71486 3.05785 3.22505 3.31796 3.34064 3.77057 3.87045 4.26456 4.59745 4.71126 4.73009 4.84936 5.05542 5.15616 5.31638 5.35973 5.40376 5.43267 5.47576 5.59343 5.69128 5.71651 5.82525 5.91338 5.98416 6.00916 6.09291 6.21241 6.25258 6.51568 6.53628 6.60238 6.68473 6.77433 6.92276 6.99763 7.22579 7.38495 7.60612 7.84397 8.12281 8.39056 8.77990 9.35519 10.84759 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.004746 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.713303 B = 5898.811431 C = 6936.438762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.164 4.164 3 C -0.036 4.036 4 C -0.184 4.184 5 C -0.102 4.102 6 C 0.281 3.719 7 N -0.857 5.857 8 C -0.207 4.207 9 C 0.515 3.485 10 O -0.529 6.529 11 O -0.343 6.343 12 C 0.087 3.913 13 C 0.004 3.996 14 C -0.483 4.483 15 H 0.086 0.914 16 C 0.079 3.921 17 N -0.883 5.883 18 Si 0.871 3.129 19 H -0.274 1.274 20 H -0.290 1.290 21 H -0.258 1.258 22 C -0.199 4.199 23 C -0.178 4.178 24 C -0.013 4.013 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.124 0.876 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.393 0.607 33 H 0.417 0.583 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.269 0.731 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 22.120 -0.984 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.166 4.166 3 C -0.055 4.055 4 C -0.189 4.189 5 C -0.159 4.159 6 C 0.169 3.831 7 N -0.404 5.404 8 C -0.214 4.214 9 C 0.362 3.638 10 O -0.421 6.421 11 O -0.259 6.259 12 C 0.015 3.985 13 C 0.003 3.997 14 C -0.519 4.519 15 H 0.104 0.896 16 C -0.125 4.125 17 N -0.519 5.519 18 Si 0.701 3.299 19 H -0.200 1.200 20 H -0.217 1.217 21 H -0.184 1.184 22 C -0.237 4.237 23 C -0.215 4.215 24 C -0.031 4.031 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.142 0.858 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.222 0.778 33 H 0.259 0.741 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.365 21.845 -0.950 22.774 hybrid contribution 1.102 0.473 -0.667 1.372 sum -5.263 22.319 -1.617 22.988 Atomic orbital electron populations 1.20643 0.90883 1.02490 1.01974 1.19561 0.96265 0.92477 1.08273 1.20865 0.92618 0.97596 0.94431 1.19283 0.93950 0.93284 1.12401 1.20567 0.99742 0.93681 1.01931 1.17510 0.84572 0.91660 0.89332 1.43501 1.03454 1.14731 1.78747 1.18556 0.93826 0.88820 1.20188 1.20991 0.85617 0.84848 0.72300 1.90452 1.15711 1.87258 1.48714 1.86519 1.43076 1.14773 1.81491 1.23567 0.94034 0.79027 1.01882 1.19376 0.87006 0.92455 1.00892 1.20299 0.99344 0.95027 1.37279 0.89596 1.24986 0.96638 0.95417 0.95496 1.69898 1.11959 1.28019 1.42006 0.87175 0.79633 0.80495 0.82549 1.20000 1.21734 1.18406 1.23108 1.08017 1.00903 0.91658 1.22740 1.01051 1.00666 0.97062 1.21162 0.91828 0.98581 0.91568 0.91724 0.91588 0.92025 0.85790 0.91650 0.91329 0.92115 0.77838 0.74060 0.91690 0.90590 0.92140 0.90950 0.89716 0.89969 0.90283 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.00 36.01 0.36 -0.52 16 2 C -0.16 -1.84 5.87 -104.67 -0.61 -2.45 16 3 C -0.04 -0.37 9.33 -39.54 -0.37 -0.74 16 4 C -0.18 -2.03 5.89 -104.46 -0.62 -2.65 16 5 C -0.10 -0.79 9.50 36.01 0.34 -0.45 16 6 C 0.28 3.86 6.74 -83.61 -0.56 3.29 16 7 N -0.86 -10.91 8.76 32.55 0.29 -10.63 16 8 C -0.21 -3.28 5.89 -104.82 -0.62 -3.89 16 9 C 0.51 9.90 7.86 34.41 0.27 10.17 16 10 O -0.53 -10.98 13.44 -19.28 -0.26 -11.24 16 11 O -0.34 -7.06 7.76 -40.67 -0.32 -7.38 16 12 C 0.09 2.04 4.15 37.16 0.15 2.20 16 13 C 0.00 0.09 1.84 -155.66 -0.29 -0.20 16 14 C -0.48 -13.52 9.57 -34.44 -0.33 -13.85 16 15 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 16 C 0.08 2.26 5.42 -17.82 -0.10 2.16 16 17 N -0.88 -26.50 13.96 55.43 0.77 -25.72 16 18 Si 0.87 22.10 24.22 -169.99 -4.12 17.99 16 19 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.26 -6.39 6.37 56.52 0.36 -6.03 16 22 C -0.20 -4.30 9.67 -26.69 -0.26 -4.55 16 23 C -0.18 -3.71 9.63 -26.69 -0.26 -3.97 16 24 C -0.01 -0.17 9.25 -39.19 -0.36 -0.54 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.56 8.08 -51.92 -0.42 0.14 16 27 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.06 0.44 6.69 -51.93 -0.35 0.09 16 32 H 0.39 3.71 6.96 -40.82 -0.28 3.43 16 33 H 0.42 6.26 5.38 -40.89 -0.22 6.04 16 34 H 0.07 1.62 2.63 -51.93 -0.14 1.48 16 35 H 0.08 1.82 8.10 -51.93 -0.42 1.40 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.07 1.47 7.85 -51.93 -0.41 1.07 16 38 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 39 H 0.08 1.68 8.14 -51.92 -0.42 1.25 16 40 H 0.08 1.50 7.48 -51.93 -0.39 1.11 16 41 H 0.14 1.85 7.63 -52.49 -0.40 1.45 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -31.12 333.29 -7.43 -38.55 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.58 Total: 9.40 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -3.24 Total: -15.99 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 1.06 Total: -36.35 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.57 Total: -18.61 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.12 Total: 17.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.12 -7.43 -38.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849723185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.428 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds