Wall clock time and date at job start Tue Mar 31 2020 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38633 * 119.81536 * 2 1 4 4 C 1.37952 * 120.43242 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.96210 * 179.97438 * 4 3 2 6 6 C 1.38958 * 120.06958 * 0.02562 * 4 3 2 7 7 N 1.38828 * 120.17918 * 179.69987 * 6 4 3 8 8 C 1.40402 * 119.64387 * 359.97059 * 6 4 3 9 9 C 1.47288 * 120.21676 * 179.97438 * 8 6 4 10 10 O 1.21524 * 120.00232 * 6.58416 * 9 8 6 11 11 O 1.34767 * 119.99965 * 186.58715 * 9 8 6 12 12 C 1.45205 * 116.99814 * 185.22090 * 11 9 8 13 13 C 1.53005 * 109.46827 * 175.12268 * 12 11 9 14 14 C 1.50699 * 115.54695 * 185.72496 * 13 12 11 15 15 H 1.08006 * 119.99721 * 144.42982 * 14 13 12 16 16 C 1.37869 * 120.00263 * 324.43028 * 14 13 12 17 17 N 1.31519 * 120.00478 * 167.65455 * 16 14 13 18 18 Si 1.86803 * 120.00246 * 347.65826 * 16 14 13 19 19 H 1.48495 * 109.47193 * 95.75901 * 18 16 14 20 20 H 1.48501 * 109.47513 * 215.76461 * 18 16 14 21 21 H 1.48502 * 109.46843 * 335.76480 * 18 16 14 22 22 C 1.53004 * 117.49881 * 40.05910 * 13 12 11 23 23 C 1.52999 * 117.49756 * 331.39820 * 13 12 11 24 24 C 1.37714 * 119.82079 * 179.97438 * 2 1 3 25 25 H 1.08994 * 109.47350 * 89.99751 * 1 2 3 26 26 H 1.09007 * 109.46477 * 209.99579 * 1 2 3 27 27 H 1.08995 * 109.47222 * 329.98585 * 1 2 3 28 28 H 1.07996 * 119.78437 * 359.97438 * 3 2 1 29 29 H 1.09008 * 109.47164 * 270.02671 * 5 4 3 30 30 H 1.08996 * 109.47006 * 30.02710 * 5 4 3 31 31 H 1.08994 * 109.47088 * 150.02820 * 5 4 3 32 32 H 0.97007 * 120.00108 * 351.78881 * 7 6 4 33 33 H 0.96997 * 120.00166 * 171.79556 * 7 6 4 34 34 H 1.09001 * 109.46634 * 295.11731 * 12 11 9 35 35 H 1.08992 * 109.47313 * 55.12329 * 12 11 9 36 36 H 0.96997 * 120.00573 * 180.02562 * 17 16 14 37 37 H 1.08995 * 117.49946 * 359.97438 * 22 13 12 38 38 H 1.09001 * 117.49910 * 145.02024 * 22 13 12 39 39 H 1.09007 * 117.49273 * 214.97859 * 23 13 12 40 40 H 1.08995 * 117.50519 * 359.97438 * 23 13 12 41 41 H 1.08000 * 120.04408 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2028 0.0000 4 6 3.5758 1.2177 0.0005 5 6 4.3143 2.5313 -0.0001 6 6 4.2849 0.0227 0.0005 7 7 5.6731 0.0350 -0.0052 8 6 3.5899 -1.1973 0.0006 9 6 4.3289 -2.4714 0.0001 10 8 5.5382 -2.4725 0.1202 11 8 3.6640 -3.6359 -0.1337 12 6 4.4406 -4.8565 -0.0090 13 6 3.5040 -6.0650 -0.0675 14 6 4.1520 -7.4021 0.1840 15 1 3.6116 -8.1730 0.7135 16 6 5.4345 -7.6415 -0.2617 17 7 6.0899 -8.7013 0.1589 18 14 6.2415 -6.4604 -1.4631 19 1 7.0796 -5.4892 -0.7150 20 1 7.0937 -7.2231 -2.4103 21 1 5.1927 -5.7297 -2.2189 22 6 2.3503 -6.0167 -1.0713 23 6 2.0690 -5.8712 0.4263 24 6 2.1919 -1.1948 0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3633 0.8898 0.5140 28 1 1.6498 2.1343 -0.0004 29 1 4.4924 2.8476 -1.0279 30 1 3.7166 3.2844 0.5134 31 1 5.2681 2.4121 0.5138 32 1 6.1503 0.8704 -0.1292 33 1 6.1660 -0.7918 0.1147 34 1 5.1600 -4.9144 -0.8258 35 1 4.9711 -4.8538 0.9431 36 1 6.9924 -8.8695 -0.1544 37 1 2.2582 -5.1238 -1.6896 38 1 2.0597 -6.9522 -1.5494 39 1 1.5934 -6.7111 0.9329 40 1 1.7921 -4.8830 0.7934 41 1 1.6497 -2.1288 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849723185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:24 Heat of formation + Delta-G solvation = -48.442763 kcal Electronic energy + Delta-G solvation = -23050.759399 eV Core-core repulsion = 19702.814281 eV Total energy + Delta-G solvation = -3347.945118 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.90835 -40.37706 -38.83938 -37.15639 -36.01765 -34.45505 -33.67175 -32.00395 -29.66711 -28.21974 -27.35813 -26.66892 -25.02243 -23.12020 -22.07542 -21.37894 -21.12116 -18.87406 -18.83817 -18.24344 -17.92158 -17.59259 -17.35794 -16.64869 -15.78452 -15.43470 -15.25895 -14.99952 -14.83218 -14.68026 -14.59648 -14.21271 -13.96248 -13.58585 -13.34381 -13.14552 -12.94194 -12.81175 -12.76521 -12.67768 -12.41660 -12.12145 -12.03971 -11.90656 -11.52895 -11.39985 -11.28019 -11.20358 -10.68971 -10.32723 -9.85039 -8.48525 -8.46276 -6.44209 -0.24296 0.56416 1.18258 1.22396 1.28202 1.43754 1.60025 2.14928 2.70900 2.78035 2.90672 3.32823 3.56161 3.79320 3.90022 3.95807 3.98330 4.10885 4.26661 4.35466 4.39692 4.50642 4.66341 4.72036 4.72522 4.84725 4.91621 4.96958 4.98922 5.01376 5.13000 5.17955 5.21775 5.32748 5.37433 5.42929 5.52350 5.55418 5.68614 5.93456 6.16479 6.37481 6.55151 6.64576 6.86891 7.14501 8.67839 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.004746 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.713303 B = 5898.811431 C = 6936.438762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.159 4.159 3 C -0.027 4.027 4 C -0.181 4.181 5 C -0.103 4.103 6 C 0.266 3.734 7 N -0.856 5.856 8 C -0.237 4.237 9 C 0.505 3.495 10 O -0.554 6.554 11 O -0.340 6.340 12 C 0.097 3.903 13 C -0.033 4.033 14 C -0.486 4.486 15 H 0.054 0.946 16 C 0.033 3.967 17 N -0.927 5.927 18 Si 0.927 3.073 19 H -0.280 1.280 20 H -0.284 1.284 21 H -0.248 1.248 22 C -0.182 4.182 23 C -0.155 4.155 24 C -0.029 4.029 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.162 0.838 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.407 0.593 33 H 0.407 0.593 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.272 0.728 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 26.046 -1.746 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.161 4.161 3 C -0.046 4.046 4 C -0.185 4.185 5 C -0.159 4.159 6 C 0.154 3.846 7 N -0.403 5.403 8 C -0.243 4.243 9 C 0.356 3.644 10 O -0.448 6.448 11 O -0.255 6.255 12 C 0.024 3.976 13 C -0.034 4.034 14 C -0.524 4.524 15 H 0.072 0.928 16 C -0.167 4.167 17 N -0.566 5.566 18 Si 0.755 3.245 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.173 1.173 22 C -0.219 4.219 23 C -0.192 4.192 24 C -0.048 4.048 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.180 0.820 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.238 0.762 33 H 0.246 0.754 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.319 25.812 -1.723 27.174 hybrid contribution 1.595 -0.616 -0.358 1.747 sum -6.725 25.196 -2.081 26.161 Atomic orbital electron populations 1.20710 0.88797 1.03553 1.02877 1.19911 0.97757 0.91908 1.06540 1.21345 0.92439 0.98707 0.92109 1.19710 0.94587 0.93533 1.10716 1.20667 0.99913 0.92258 1.03093 1.17803 0.84926 0.92047 0.89775 1.43457 1.03432 1.14924 1.78515 1.18564 0.94704 0.87531 1.23516 1.21760 0.85781 0.85242 0.71643 1.90444 1.16752 1.87500 1.50063 1.86500 1.42523 1.14464 1.82062 1.23087 0.93668 0.80429 1.00371 1.19263 0.88451 0.91038 1.04667 1.20458 0.99365 0.96299 1.36243 0.92794 1.25608 0.97344 0.96769 0.96952 1.69995 1.12664 1.30033 1.43871 0.86272 0.78894 0.78554 0.80750 1.20627 1.21087 1.17341 1.23082 1.04949 1.01702 0.92180 1.22801 0.97685 1.02001 0.96695 1.21220 0.91044 0.99669 0.92844 0.90797 0.91748 0.89838 0.82034 0.90430 0.89165 0.91808 0.76159 0.75370 0.93103 0.92321 0.91881 0.89218 0.89676 0.89668 0.88027 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.00 71.24 0.71 -0.66 16 2 C -0.16 -3.06 5.87 -19.89 -0.12 -3.18 16 3 C -0.03 -0.44 9.33 22.30 0.21 -0.23 16 4 C -0.18 -3.39 5.89 -19.76 -0.12 -3.51 16 5 C -0.10 -1.18 9.50 71.24 0.68 -0.50 16 6 C 0.27 6.93 6.74 38.73 0.26 7.19 16 7 N -0.86 -21.12 8.76 -50.93 -0.45 -21.57 16 8 C -0.24 -7.32 5.89 -19.99 -0.12 -7.43 16 9 C 0.51 19.62 7.86 70.20 0.55 20.17 16 10 O -0.55 -23.50 13.44 19.76 0.27 -23.24 16 11 O -0.34 -13.95 7.76 -56.78 -0.44 -14.39 16 12 C 0.10 4.62 4.15 71.98 0.30 4.92 16 13 C -0.03 -1.61 1.84 -52.93 -0.10 -1.71 16 14 C -0.49 -28.06 9.57 25.60 0.25 -27.81 16 15 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 16 C 0.03 1.96 5.42 84.65 0.46 2.42 16 17 N -0.93 -57.61 13.96 21.44 0.30 -57.31 16 18 Si 0.93 46.90 24.22 68.60 1.66 48.56 16 19 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 20 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 21 H -0.25 -12.01 6.37 99.48 0.63 -11.38 16 22 C -0.18 -7.56 9.67 30.62 0.30 -7.27 16 23 C -0.15 -6.26 9.63 30.62 0.29 -5.96 16 24 C -0.03 -0.75 9.25 22.53 0.21 -0.55 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.90 8.08 -2.38 -0.02 0.88 16 27 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 28 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 29 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.09 0.68 8.08 -2.39 -0.02 0.66 16 31 H 0.06 0.71 6.69 -2.39 -0.02 0.69 16 32 H 0.41 7.12 6.96 -92.70 -0.65 6.47 16 33 H 0.41 12.30 5.38 -93.85 -0.50 11.80 16 34 H 0.05 2.55 2.63 -2.39 -0.01 2.55 16 35 H 0.06 2.92 8.10 -2.39 -0.02 2.90 16 36 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 37 H 0.09 3.44 7.85 -2.39 -0.02 3.42 16 38 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 39 H 0.08 3.39 8.14 -2.38 -0.02 3.37 16 40 H 0.10 3.65 7.48 -2.39 -0.02 3.63 16 41 H 0.13 3.43 7.63 -2.91 -0.02 3.41 16 Total: -1.00 -69.77 333.29 4.95 -64.82 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -0.16 Total: 27.22 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 3.76 Total: -24.10 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -0.15 Total: -78.88 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.18 Total: -37.63 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.66 Total: 48.56 kcal Total: -69.77 4.95 -64.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849723185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.380 kcal (2) G-P(sol) polarization free energy of solvation -69.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds