Wall clock time and date at job start Tue Mar 31 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53787 * 113.60935 * 2 1 4 4 C 1.53788 * 87.07785 * 219.93654 * 3 2 1 5 5 C 1.52995 * 113.61423 * 139.98204 * 4 3 2 6 6 N 1.46498 * 109.47065 * 176.52854 * 5 4 3 7 7 C 1.34775 * 120.00144 * 179.97438 * 6 5 4 8 8 O 1.21595 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.47536 * 120.00071 * 179.97438 * 7 6 5 10 10 C 1.39666 * 120.19738 * 0.02562 * 9 7 6 11 11 C 1.37829 * 119.91726 * 179.97438 * 10 9 7 12 12 C 1.38572 * 120.32612 * 0.02562 * 11 10 9 13 13 C 1.38026 * 120.40068 * 359.97438 * 12 11 10 14 14 C 1.38832 * 120.07329 * 359.73904 * 13 12 11 15 15 O 1.35517 * 120.16659 * 180.27488 * 14 13 12 16 16 C 1.34819 * 116.99689 * 354.39874 * 15 14 13 17 17 H 1.08003 * 120.00152 * 5.05628 * 16 15 14 18 18 C 1.38697 * 120.00151 * 185.05200 * 16 15 14 19 19 N 1.31515 * 120.00462 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99880 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.46756 * 90.00063 * 20 18 16 22 22 H 1.48495 * 109.46870 * 210.00069 * 20 18 16 23 23 H 1.48504 * 109.46870 * 330.00349 * 20 18 16 24 24 C 1.53780 * 87.17289 * 25.38919 * 4 3 2 25 25 H 1.08990 * 109.47425 * 59.99914 * 1 2 3 26 26 H 1.09000 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46981 * 299.99628 * 1 2 3 28 28 H 1.08995 * 112.85292 * 131.19250 * 2 1 3 29 29 H 1.08999 * 113.61429 * 105.39411 * 3 2 1 30 30 H 1.08999 * 113.61663 * 334.47750 * 3 2 1 31 31 H 1.08999 * 113.61565 * 270.80237 * 4 3 2 32 32 H 1.09000 * 109.47066 * 56.53037 * 5 4 3 33 33 H 1.08997 * 109.47284 * 296.52853 * 5 4 3 34 34 H 0.97003 * 120.00260 * 0.02562 * 6 5 4 35 35 H 1.07994 * 120.04003 * 359.94506 * 10 9 7 36 36 H 1.08001 * 119.83481 * 179.97438 * 11 10 9 37 37 H 1.07997 * 119.80018 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.96402 * 180.02562 * 13 12 11 39 39 H 0.96998 * 120.00512 * 179.97438 * 19 18 16 40 40 H 1.09002 * 113.61590 * 89.15994 * 24 4 3 41 41 H 1.08996 * 113.61826 * 220.05951 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1459 1.4091 0.0000 4 6 3.1936 0.8657 -0.9859 5 6 3.5488 1.8465 -2.1052 6 7 4.6084 1.2733 -2.9387 7 6 5.0843 1.9645 -3.9933 8 8 4.6346 3.0640 -4.2526 9 6 6.1518 1.3874 -4.8325 10 6 6.6718 0.1250 -4.5381 11 6 7.6686 -0.4087 -5.3262 12 6 8.1590 0.3013 -6.4104 13 6 7.6549 1.5500 -6.7134 14 6 6.6465 2.1009 -5.9343 15 8 6.1463 3.3243 -6.2334 16 6 6.7488 4.0052 -7.2289 17 1 7.5369 3.5394 -7.8019 18 6 6.3565 5.3040 -7.5173 19 7 6.9439 5.9680 -8.4886 20 14 4.9938 6.1100 -6.5258 21 1 5.5812 6.8114 -5.3561 22 1 4.2732 7.0885 -7.3792 23 1 4.0438 5.0706 -6.0539 24 6 2.1499 -0.1863 -1.3969 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.9533 -0.6615 0.7558 29 1 2.5637 1.7030 0.9629 30 1 1.4950 2.1702 -0.4303 31 1 4.0724 0.4420 -0.4997 32 1 3.8956 2.7838 -1.6703 33 1 2.6666 2.0343 -2.7172 34 1 4.9669 0.3959 -2.7322 35 1 6.2935 -0.4320 -3.6937 36 1 8.0700 -1.3849 -5.0971 37 1 8.9405 -0.1249 -7.0220 38 1 8.0420 2.0970 -7.5604 39 1 6.6694 6.8762 -8.6906 40 1 1.4999 0.1378 -2.2097 41 1 2.5707 -1.1784 -1.5600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857406718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:12 Heat of formation + Delta-G solvation = -25.122764 kcal Electronic energy + Delta-G solvation = -22507.497260 eV Core-core repulsion = 19160.563373 eV Total energy + Delta-G solvation = -3346.933887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.95082 -39.35699 -38.02118 -36.50399 -34.16996 -32.43986 -31.12656 -29.96576 -29.18797 -26.60688 -25.87280 -25.22188 -23.10915 -21.55960 -20.96548 -20.21252 -19.47938 -17.90026 -17.75957 -16.34734 -16.09757 -15.50150 -14.90184 -14.70823 -14.43800 -14.07136 -14.01642 -13.79175 -13.73161 -13.52615 -13.25526 -12.70163 -12.64359 -12.38716 -12.33926 -12.15613 -11.67087 -11.41397 -11.25900 -11.20741 -10.86088 -10.79592 -10.70654 -10.41353 -10.30898 -10.03624 -9.60019 -9.01883 -8.87972 -8.68080 -8.36035 -7.46658 -6.46025 -4.11087 1.59253 2.19819 3.32567 3.39232 3.56218 3.60693 3.67810 4.32505 4.36985 4.40799 4.48104 4.54062 4.62816 4.75392 5.06053 5.10342 5.19424 5.26827 5.38265 5.41037 5.45364 5.48992 5.58139 5.59032 5.64982 5.73884 5.81836 5.87687 5.91981 6.04997 6.05920 6.13074 6.33140 6.38986 6.56489 6.82336 6.86281 7.02212 7.15728 7.49149 7.68995 7.95958 7.99988 8.88167 8.92583 9.53203 10.59137 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.004410 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.018796 B = 6348.134688 C = 7929.918452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.127 4.127 4 C -0.124 4.124 5 C 0.134 3.866 6 N -0.740 5.740 7 C 0.559 3.441 8 O -0.520 6.520 9 C -0.226 4.226 10 C -0.041 4.041 11 C -0.222 4.222 12 C -0.051 4.051 13 C -0.227 4.227 14 C 0.201 3.799 15 O -0.166 6.166 16 C -0.397 4.397 17 H 0.108 0.892 18 C 0.072 3.928 19 N -0.870 5.870 20 Si 0.900 3.100 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.239 1.239 24 C -0.132 4.132 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.393 0.607 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.138 0.862 39 H 0.282 0.718 40 H 0.084 0.916 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.880 -13.661 14.923 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.165 4.165 4 C -0.142 4.142 5 C 0.010 3.990 6 N -0.395 5.395 7 C 0.349 3.651 8 O -0.396 6.396 9 C -0.231 4.231 10 C -0.060 4.060 11 C -0.241 4.241 12 C -0.070 4.070 13 C -0.246 4.246 14 C 0.143 3.857 15 O -0.066 6.066 16 C -0.472 4.472 17 H 0.125 0.875 18 C -0.134 4.134 19 N -0.506 5.506 20 Si 0.725 3.275 21 H -0.199 1.199 22 H -0.213 1.213 23 H -0.161 1.161 24 C -0.169 4.169 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.228 0.772 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.416 -12.444 14.671 20.618 hybrid contribution -0.080 -0.059 0.284 0.301 sum -7.496 -12.503 14.955 20.885 Atomic orbital electron populations 1.21723 0.94889 1.01563 1.01820 1.22487 0.95582 0.97500 0.97898 1.22975 0.97563 0.96863 0.99122 1.22756 0.97659 0.97181 0.96621 1.21225 0.90832 0.96052 0.90926 1.45865 1.40816 1.21905 1.30875 1.18210 0.82094 0.84937 0.79882 1.90853 1.59083 1.19659 1.69980 1.18889 1.05815 0.97969 1.00422 1.20757 0.94957 0.92822 0.97422 1.20537 1.02610 1.01220 0.99693 1.20961 0.97053 0.93491 0.95480 1.21288 1.01689 0.97737 1.03919 1.19031 0.90121 0.85770 0.90748 1.83784 1.50280 1.23782 1.48734 1.20930 1.19610 0.96871 1.09745 0.87450 1.24490 0.97922 0.95006 0.95944 1.69635 1.40624 1.12129 1.28220 0.86198 0.82388 0.79682 0.79228 1.19938 1.21256 1.16149 1.23155 0.97828 0.99039 0.96884 0.92489 0.92787 0.92655 0.89467 0.91351 0.89692 0.88779 0.91822 0.91769 0.77202 0.86880 0.87030 0.86844 0.84431 0.90838 0.89763 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.71 37.16 0.36 -0.65 16 2 C -0.12 -0.88 4.36 -89.71 -0.39 -1.27 16 3 C -0.13 -1.06 7.21 -25.91 -0.19 -1.25 16 4 C -0.12 -1.15 3.75 -89.81 -0.34 -1.49 16 5 C 0.13 1.77 5.50 -4.05 -0.02 1.74 16 6 N -0.74 -11.04 5.51 -61.35 -0.34 -11.38 16 7 C 0.56 11.51 7.76 -12.47 -0.10 11.41 16 8 O -0.52 -13.18 15.17 -16.57 -0.25 -13.43 16 9 C -0.23 -4.65 5.89 -104.81 -0.62 -5.26 16 10 C -0.04 -0.65 9.54 -39.20 -0.37 -1.03 16 11 C -0.22 -3.45 10.02 -39.61 -0.40 -3.85 16 12 C -0.05 -0.88 10.03 -39.54 -0.40 -1.28 16 13 C -0.23 -4.84 9.16 -39.44 -0.36 -5.20 16 14 C 0.20 4.81 6.66 -38.60 -0.26 4.55 16 15 O -0.17 -4.62 6.67 -21.06 -0.14 -4.76 16 16 C -0.40 -11.46 9.95 30.90 0.31 -11.16 16 17 H 0.11 3.08 5.44 -52.48 -0.29 2.80 16 18 C 0.07 2.09 5.49 -17.52 -0.10 1.99 16 19 N -0.87 -25.51 13.96 55.48 0.77 -24.73 16 20 Si 0.90 23.48 28.62 -169.99 -4.86 18.61 16 21 H -0.27 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.24 -6.58 7.11 56.52 0.40 -6.17 16 24 C -0.13 -1.13 7.20 -25.83 -0.19 -1.32 16 25 H 0.06 0.43 7.96 -51.93 -0.41 0.02 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.92 7.87 -51.93 -0.41 0.52 16 34 H 0.39 4.63 6.50 -40.82 -0.27 4.36 16 35 H 0.11 1.36 6.40 -52.49 -0.34 1.03 16 36 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.14 3.04 5.64 -52.48 -0.30 2.74 16 39 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.08 0.80 7.75 -51.93 -0.40 0.40 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 340.50 15.07 5.13 5.13 Total: -1.00 -32.93 340.50 -8.50 -41.44 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.77 Total: 3.19 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -3.05 Total: -14.06 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.44 Total: -36.11 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.39 Total: -18.19 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.86 Total: 18.61 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.93 -8.50 -41.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857406718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.314 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds