Wall clock time and date at job start Tue Mar 31 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 115.56335 * 2 1 4 4 C 1.52993 * 117.50135 * 214.30599 * 2 1 3 5 5 C 1.52999 * 60.00485 * 252.51443 * 4 2 1 6 6 C 1.52999 * 117.49712 * 252.49210 * 5 4 2 7 7 N 1.46499 * 117.50157 * 107.48924 * 5 4 2 8 8 C 1.34776 * 119.99829 * 57.30723 * 7 5 4 9 9 O 1.21591 * 120.00025 * 5.17388 * 8 7 5 10 10 C 1.47538 * 119.99641 * 185.17318 * 8 7 5 11 11 C 1.39661 * 120.19895 * 0.27815 * 10 8 7 12 12 C 1.37831 * 119.91886 * 180.29527 * 11 10 8 13 13 C 1.38567 * 120.32233 * 359.72283 * 12 11 10 14 14 C 1.38024 * 120.40277 * 359.97438 * 13 12 11 15 15 C 1.38834 * 120.07429 * 0.02562 * 14 13 12 16 16 O 1.35516 * 120.16671 * 179.97438 * 15 14 13 17 17 C 1.34823 * 116.99847 * 5.80461 * 16 15 14 18 18 H 1.07997 * 119.99516 * 354.84909 * 17 16 15 19 19 C 1.38688 * 119.99888 * 174.86373 * 17 16 15 20 20 N 1.31521 * 119.99775 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00398 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47036 * 270.00548 * 21 19 17 23 23 H 1.48496 * 109.46904 * 30.00708 * 21 19 17 24 24 H 1.48503 * 109.47094 * 150.00411 * 21 19 17 25 25 H 1.08998 * 109.47532 * 274.31450 * 1 2 3 26 26 H 1.08996 * 109.47418 * 34.31469 * 1 2 3 27 27 H 1.09006 * 109.47362 * 154.31674 * 1 2 3 28 28 H 1.08995 * 109.47227 * 205.68757 * 3 2 1 29 29 H 1.09004 * 109.46685 * 325.68855 * 3 2 1 30 30 H 1.09000 * 109.47096 * 85.68294 * 3 2 1 31 31 H 1.09002 * 117.50192 * 145.02170 * 4 2 1 32 32 H 1.09008 * 117.51784 * 359.97438 * 4 2 1 33 33 H 1.09000 * 109.46761 * 273.63082 * 6 5 4 34 34 H 1.08997 * 109.47569 * 33.62650 * 6 5 4 35 35 H 1.09001 * 109.47474 * 153.63440 * 6 5 4 36 36 H 0.97002 * 119.99829 * 237.31118 * 7 5 4 37 37 H 1.08002 * 120.04330 * 359.97438 * 11 10 8 38 38 H 1.07995 * 119.84111 * 179.70326 * 12 11 10 39 39 H 1.08000 * 119.80146 * 180.02562 * 13 12 11 40 40 H 1.08003 * 119.96820 * 180.02562 * 14 13 12 41 41 H 0.97008 * 120.00182 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7648 5 6 2.2364 -1.1210 0.7651 6 6 3.5490 -0.7764 1.4716 7 7 1.3960 -2.1122 1.4416 8 6 1.5705 -3.4254 1.1935 9 8 2.4852 -3.7934 0.4819 10 6 0.6516 -4.4163 1.7855 11 6 -0.4038 -3.9977 2.5987 12 6 -1.2552 -4.9289 3.1537 13 6 -1.0730 -6.2797 2.9043 14 6 -0.0381 -6.7077 2.0975 15 6 0.8293 -5.7841 1.5300 16 8 1.8464 -6.2023 0.7380 17 6 1.8911 -7.5169 0.4422 18 1 1.1874 -8.1972 0.8986 19 6 2.8409 -7.9955 -0.4479 20 7 2.8847 -9.2780 -0.7360 21 14 4.0578 -6.8187 -1.2375 22 1 3.4907 -6.2988 -2.5077 23 1 4.3224 -5.6867 -0.3136 24 1 5.3278 -7.5351 -1.5190 25 1 -0.3634 0.0773 1.0247 26 1 -0.3634 0.8488 -0.5793 27 1 -0.3634 -0.9262 -0.4454 28 1 3.1823 1.3084 -0.4454 29 1 1.5811 2.0742 -0.5793 30 1 2.2771 1.7414 1.0248 31 1 3.1715 -0.8752 -1.2681 32 1 1.6115 -1.8590 -1.2679 33 1 4.1502 -1.6789 1.5816 34 1 4.0984 -0.0438 0.8804 35 1 3.3337 -0.3611 2.4561 36 1 0.7140 -1.8233 2.0680 37 1 -0.5497 -2.9461 2.7967 38 1 -2.0680 -4.6041 3.7862 39 1 -1.7453 -7.0020 3.3431 40 1 0.0972 -7.7622 1.9075 41 1 3.5493 -9.6129 -1.3583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857673751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:48 Heat of formation + Delta-G solvation = -13.852292 kcal Electronic energy + Delta-G solvation = -23348.578801 eV Core-core repulsion = 20002.133639 eV Total energy + Delta-G solvation = -3346.445163 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.11721 -39.11505 -37.35073 -36.48119 -33.07273 -32.44331 -30.79997 -29.65163 -29.19194 -27.96524 -26.92370 -25.31346 -23.54515 -21.69737 -20.95001 -19.61038 -18.79502 -17.87175 -17.58406 -16.32758 -15.79586 -15.01485 -14.85908 -14.38295 -14.22894 -14.09964 -13.86050 -13.75358 -13.35826 -13.33514 -12.92123 -12.61094 -12.38167 -12.34432 -12.28313 -12.16158 -12.06418 -11.67628 -11.41586 -11.25921 -11.19183 -10.84264 -10.71930 -10.04704 -10.02614 -9.63519 -9.53586 -8.94601 -8.88648 -8.67961 -8.37752 -7.47629 -6.46751 -4.11857 1.58484 2.18939 3.31563 3.36277 3.38398 3.60367 3.67340 3.72000 4.36198 4.51956 4.62196 4.70899 4.74152 4.87058 4.97684 5.09663 5.33319 5.37582 5.48499 5.49823 5.63617 5.67493 5.72437 5.78789 5.81239 5.85336 5.88941 5.97880 5.98478 6.04450 6.07879 6.29168 6.32176 6.37901 6.55463 6.82723 6.95307 7.02385 7.14942 7.48219 7.68245 7.95171 8.01005 8.87994 8.94438 9.52221 10.58347 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014331 B = 0.006097 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.332994 B = 4591.013085 C = 6131.293096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.131 4.131 3 C -0.112 4.112 4 C -0.150 4.150 5 C 0.112 3.888 6 C -0.120 4.120 7 N -0.711 5.711 8 C 0.563 3.437 9 O -0.510 6.510 10 C -0.226 4.226 11 C -0.041 4.041 12 C -0.221 4.221 13 C -0.051 4.051 14 C -0.227 4.227 15 C 0.201 3.799 16 O -0.165 6.165 17 C -0.396 4.396 18 H 0.108 0.892 19 C 0.072 3.928 20 N -0.870 5.870 21 Si 0.900 3.100 22 H -0.274 1.274 23 H -0.238 1.238 24 H -0.287 1.287 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.394 0.606 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.138 0.862 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 17.988 4.684 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.132 4.132 3 C -0.169 4.169 4 C -0.188 4.188 5 C 0.024 3.976 6 C -0.179 4.179 7 N -0.365 5.365 8 C 0.353 3.647 9 O -0.384 6.384 10 C -0.231 4.231 11 C -0.060 4.060 12 C -0.240 4.240 13 C -0.070 4.070 14 C -0.246 4.246 15 C 0.143 3.857 16 O -0.065 6.065 17 C -0.471 4.471 18 H 0.125 0.875 19 C -0.134 4.134 20 N -0.506 5.506 21 Si 0.725 3.275 22 H -0.200 1.200 23 H -0.160 1.160 24 H -0.213 1.213 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.230 0.770 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.156 0.844 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.955 17.604 3.890 18.457 hybrid contribution -0.003 0.168 -0.009 0.168 sum -3.959 17.772 3.881 18.616 Atomic orbital electron populations 1.21272 0.91903 1.02143 1.01615 1.22028 0.95218 0.91359 1.04607 1.21351 1.00013 0.93725 1.01788 1.23451 1.02184 0.99618 0.93539 1.20589 0.92924 0.92335 0.91755 1.21494 0.94705 1.01860 0.99812 1.45216 1.38933 1.04931 1.47416 1.18204 0.84434 0.81299 0.80807 1.90852 1.31323 1.79207 1.37063 1.18883 1.02431 0.90839 1.10905 1.20762 0.92815 0.98220 0.94193 1.20534 1.03010 0.93198 1.07291 1.20960 0.95642 0.95450 0.94923 1.21286 0.98686 1.00775 1.03876 1.19027 0.86445 0.91082 0.89123 1.83784 1.39346 1.27328 1.56066 1.20922 1.19408 0.79883 1.26918 0.87483 1.24487 0.97393 0.96105 0.95370 1.69643 1.35000 1.12590 1.33337 0.86201 0.79035 0.81471 0.80822 1.19982 1.16038 1.21303 0.92452 0.92210 0.92128 0.92274 0.92145 0.92171 0.88431 0.88393 0.91470 0.91624 0.92338 0.76999 0.86926 0.87040 0.86855 0.84446 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.27 37.15 0.34 -0.79 16 2 C -0.13 -1.46 2.70 -154.51 -0.42 -1.88 16 3 C -0.11 -0.97 8.66 37.16 0.32 -0.65 16 4 C -0.15 -2.15 8.59 -26.74 -0.23 -2.38 16 5 C 0.11 1.55 2.37 -131.82 -0.31 1.24 16 6 C -0.12 -1.52 9.46 37.16 0.35 -1.17 16 7 N -0.71 -10.81 4.78 -48.63 -0.23 -11.04 16 8 C 0.56 11.43 7.61 -12.47 -0.09 11.33 16 9 O -0.51 -12.62 14.62 -16.57 -0.24 -12.87 16 10 C -0.23 -4.60 5.89 -104.81 -0.62 -5.22 16 11 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 12 C -0.22 -3.44 10.02 -39.61 -0.40 -3.84 16 13 C -0.05 -0.88 10.03 -39.54 -0.40 -1.28 16 14 C -0.23 -4.82 9.16 -39.44 -0.36 -5.18 16 15 C 0.20 4.77 6.66 -38.60 -0.26 4.51 16 16 O -0.17 -4.56 6.67 -21.07 -0.14 -4.70 16 17 C -0.40 -11.40 9.95 30.90 0.31 -11.09 16 18 H 0.11 3.07 5.44 -52.49 -0.29 2.78 16 19 C 0.07 2.08 5.49 -17.52 -0.10 1.98 16 20 N -0.87 -25.42 13.96 55.48 0.77 -24.65 16 21 Si 0.90 23.39 28.62 -169.99 -4.86 18.52 16 22 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.24 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 27 H 0.06 0.71 7.90 -51.93 -0.41 0.30 16 28 H 0.06 0.50 7.23 -51.93 -0.38 0.13 16 29 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.10 1.30 8.05 -51.93 -0.42 0.89 16 32 H 0.10 1.63 8.05 -51.92 -0.42 1.21 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.70 6.76 -51.93 -0.35 0.35 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.39 4.85 6.84 -40.82 -0.28 4.57 16 37 H 0.11 1.37 6.42 -52.49 -0.34 1.03 16 38 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.14 3.03 5.64 -52.48 -0.30 2.73 16 41 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -32.55 340.51 -7.47 -40.02 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.66 Total: 5.03 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.23 Total: -15.45 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.54 Total: -35.69 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.38 Total: -17.57 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.86 Total: 18.52 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.55 -7.47 -40.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857673751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.168 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds