Wall clock time and date at job start Tue Mar 31 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 115.56335 * 2 1 4 4 C 1.52993 * 117.50135 * 214.30599 * 2 1 3 5 5 C 1.52999 * 60.00485 * 252.51443 * 4 2 1 6 6 C 1.52999 * 117.49712 * 252.49210 * 5 4 2 7 7 N 1.46499 * 117.50157 * 107.48924 * 5 4 2 8 8 C 1.34776 * 119.99829 * 57.30723 * 7 5 4 9 9 O 1.21591 * 120.00025 * 5.17388 * 8 7 5 10 10 C 1.47538 * 119.99641 * 185.17318 * 8 7 5 11 11 C 1.39661 * 120.19895 * 0.27815 * 10 8 7 12 12 C 1.37831 * 119.91886 * 180.29527 * 11 10 8 13 13 C 1.38567 * 120.32233 * 359.72283 * 12 11 10 14 14 C 1.38024 * 120.40277 * 359.97438 * 13 12 11 15 15 C 1.38834 * 120.07429 * 0.02562 * 14 13 12 16 16 O 1.35516 * 120.16671 * 179.97438 * 15 14 13 17 17 C 1.34823 * 116.99847 * 5.80461 * 16 15 14 18 18 H 1.07997 * 119.99516 * 354.84909 * 17 16 15 19 19 C 1.38688 * 119.99888 * 174.86373 * 17 16 15 20 20 N 1.31521 * 119.99775 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00398 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47036 * 270.00548 * 21 19 17 23 23 H 1.48496 * 109.46904 * 30.00708 * 21 19 17 24 24 H 1.48503 * 109.47094 * 150.00411 * 21 19 17 25 25 H 1.08998 * 109.47532 * 274.31450 * 1 2 3 26 26 H 1.08996 * 109.47418 * 34.31469 * 1 2 3 27 27 H 1.09006 * 109.47362 * 154.31674 * 1 2 3 28 28 H 1.08995 * 109.47227 * 205.68757 * 3 2 1 29 29 H 1.09004 * 109.46685 * 325.68855 * 3 2 1 30 30 H 1.09000 * 109.47096 * 85.68294 * 3 2 1 31 31 H 1.09002 * 117.50192 * 145.02170 * 4 2 1 32 32 H 1.09008 * 117.51784 * 359.97438 * 4 2 1 33 33 H 1.09000 * 109.46761 * 273.63082 * 6 5 4 34 34 H 1.08997 * 109.47569 * 33.62650 * 6 5 4 35 35 H 1.09001 * 109.47474 * 153.63440 * 6 5 4 36 36 H 0.97002 * 119.99829 * 237.31118 * 7 5 4 37 37 H 1.08002 * 120.04330 * 359.97438 * 11 10 8 38 38 H 1.07995 * 119.84111 * 179.70326 * 12 11 10 39 39 H 1.08000 * 119.80146 * 180.02562 * 13 12 11 40 40 H 1.08003 * 119.96820 * 180.02562 * 14 13 12 41 41 H 0.97008 * 120.00182 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7648 5 6 2.2364 -1.1210 0.7651 6 6 3.5490 -0.7764 1.4716 7 7 1.3960 -2.1122 1.4416 8 6 1.5705 -3.4254 1.1935 9 8 2.4852 -3.7934 0.4819 10 6 0.6516 -4.4163 1.7855 11 6 -0.4038 -3.9977 2.5987 12 6 -1.2552 -4.9289 3.1537 13 6 -1.0730 -6.2797 2.9043 14 6 -0.0381 -6.7077 2.0975 15 6 0.8293 -5.7841 1.5300 16 8 1.8464 -6.2023 0.7380 17 6 1.8911 -7.5169 0.4422 18 1 1.1874 -8.1972 0.8986 19 6 2.8409 -7.9955 -0.4479 20 7 2.8847 -9.2780 -0.7360 21 14 4.0578 -6.8187 -1.2375 22 1 3.4907 -6.2988 -2.5077 23 1 4.3224 -5.6867 -0.3136 24 1 5.3278 -7.5351 -1.5190 25 1 -0.3634 0.0773 1.0247 26 1 -0.3634 0.8488 -0.5793 27 1 -0.3634 -0.9262 -0.4454 28 1 3.1823 1.3084 -0.4454 29 1 1.5811 2.0742 -0.5793 30 1 2.2771 1.7414 1.0248 31 1 3.1715 -0.8752 -1.2681 32 1 1.6115 -1.8590 -1.2679 33 1 4.1502 -1.6789 1.5816 34 1 4.0984 -0.0438 0.8804 35 1 3.3337 -0.3611 2.4561 36 1 0.7140 -1.8233 2.0680 37 1 -0.5497 -2.9461 2.7967 38 1 -2.0680 -4.6041 3.7862 39 1 -1.7453 -7.0020 3.3431 40 1 0.0972 -7.7622 1.9075 41 1 3.5493 -9.6129 -1.3583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857673751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:48 Heat of formation + Delta-G solvation = -34.333569 kcal Electronic energy + Delta-G solvation = -23349.466936 eV Core-core repulsion = 20002.133639 eV Total energy + Delta-G solvation = -3347.333297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.56209 -40.57062 -38.85472 -38.10465 -34.59051 -34.42465 -32.13231 -30.81357 -30.76892 -28.82925 -27.82723 -27.29892 -25.03672 -23.25869 -22.34868 -20.97131 -20.07437 -19.77871 -19.07808 -17.92639 -17.04001 -16.58735 -16.27724 -15.94688 -15.84435 -15.62951 -15.48934 -14.92572 -14.73103 -14.67352 -14.28249 -14.04292 -14.02768 -13.68095 -13.30920 -13.16701 -13.12193 -12.92906 -12.85410 -12.67378 -12.60987 -12.40673 -12.05426 -12.02714 -11.54492 -11.12147 -10.98963 -10.78125 -10.41177 -10.04555 -9.81391 -9.15826 -8.59974 -6.28407 0.05300 0.63730 1.21475 1.26915 1.55727 2.03090 2.11305 2.27365 2.67251 2.74438 3.01121 3.16044 3.62643 3.68359 3.83824 3.99969 4.02332 4.14905 4.25294 4.46161 4.49547 4.60656 4.73104 4.78225 4.80616 4.82820 4.84368 4.90429 5.04111 5.05639 5.06135 5.07240 5.20283 5.27564 5.32564 5.46426 5.47319 5.60690 5.67794 5.70981 5.82479 6.14613 6.67167 6.77697 7.45448 7.57908 8.50589 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014331 B = 0.006097 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.332994 B = 4591.013085 C = 6131.293096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.089 4.089 3 C -0.112 4.112 4 C -0.181 4.181 5 C 0.088 3.912 6 C -0.116 4.116 7 N -0.687 5.687 8 C 0.557 3.443 9 O -0.564 6.564 10 C -0.233 4.233 11 C -0.031 4.031 12 C -0.188 4.188 13 C -0.043 4.043 14 C -0.251 4.251 15 C 0.160 3.840 16 O -0.209 6.209 17 C -0.402 4.402 18 H 0.092 0.908 19 C 0.027 3.973 20 N -0.911 5.911 21 Si 0.955 3.045 22 H -0.278 1.278 23 H -0.267 1.267 24 H -0.265 1.265 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.412 0.588 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.660 22.341 7.163 24.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.090 4.090 3 C -0.169 4.169 4 C -0.219 4.219 5 C 0.001 3.999 6 C -0.174 4.174 7 N -0.341 5.341 8 C 0.346 3.654 9 O -0.443 6.443 10 C -0.238 4.238 11 C -0.049 4.049 12 C -0.207 4.207 13 C -0.061 4.061 14 C -0.270 4.270 15 C 0.107 3.893 16 O -0.114 6.114 17 C -0.478 4.478 18 H 0.109 0.891 19 C -0.173 4.173 20 N -0.551 5.551 21 Si 0.779 3.221 22 H -0.204 1.204 23 H -0.192 1.192 24 H -0.190 1.190 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.251 0.749 37 H 0.182 0.818 38 H 0.185 0.815 39 H 0.169 0.831 40 H 0.132 0.868 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.710 22.020 6.419 23.898 hybrid contribution 0.481 -0.888 -0.504 1.129 sum -6.229 21.132 5.915 22.811 Atomic orbital electron populations 1.21365 0.90755 1.02007 1.03198 1.22166 0.95943 0.91377 0.99560 1.21433 1.00161 0.91944 1.03364 1.23433 1.02784 1.01622 0.94092 1.20958 0.94211 0.93481 0.91254 1.21476 0.93715 1.00812 1.01378 1.44950 1.38890 1.03443 1.46804 1.18399 0.83808 0.82924 0.80223 1.90838 1.33554 1.80384 1.39503 1.19334 1.03649 0.89601 1.11210 1.21345 0.90535 1.01194 0.91830 1.21236 1.02689 0.91836 1.04891 1.21444 0.94126 0.97623 0.92907 1.21331 1.00398 0.99537 1.05749 1.19784 0.86877 0.93244 0.89400 1.83776 1.42224 1.25981 1.59382 1.20896 1.19129 0.80910 1.26913 0.89071 1.25010 0.98862 0.97165 0.96274 1.69683 1.36696 1.13289 1.35406 0.85419 0.78502 0.79081 0.79055 1.20382 1.19168 1.18984 0.90262 0.90098 0.94275 0.92188 0.90348 0.90314 0.88289 0.91754 0.95103 0.89528 0.90044 0.74901 0.81823 0.81499 0.83113 0.86768 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 9.27 71.98 0.67 -1.26 16 2 C -0.09 -1.75 2.70 -52.18 -0.14 -1.89 16 3 C -0.11 -1.48 8.66 71.98 0.62 -0.86 16 4 C -0.18 -5.26 8.59 30.59 0.26 -5.00 16 5 C 0.09 2.32 2.37 3.61 0.01 2.33 16 6 C -0.12 -2.76 9.46 71.98 0.68 -2.08 16 7 N -0.69 -19.68 4.78 -426.04 -2.04 -21.72 16 8 C 0.56 22.87 7.61 86.70 0.66 23.53 16 9 O -0.56 -29.63 14.62 16.89 0.25 -29.38 16 10 C -0.23 -9.35 5.89 -19.99 -0.12 -9.47 16 11 C -0.03 -0.84 9.53 22.52 0.21 -0.62 16 12 C -0.19 -4.69 10.02 22.25 0.22 -4.46 16 13 C -0.04 -1.32 10.03 22.30 0.22 -1.10 16 14 C -0.25 -10.85 9.16 22.36 0.20 -10.64 16 15 C 0.16 7.90 6.66 22.91 0.15 8.05 16 16 O -0.21 -12.44 6.67 0.80 0.01 -12.44 16 17 C -0.40 -25.01 9.95 67.93 0.68 -24.34 16 18 H 0.09 5.72 5.44 -2.91 -0.02 5.71 16 19 C 0.03 1.68 5.49 84.85 0.47 2.14 16 20 N -0.91 -56.49 13.96 21.62 0.30 -56.19 16 21 Si 0.96 52.04 28.62 68.60 1.96 54.00 16 22 H -0.28 -14.99 7.11 99.48 0.71 -14.29 16 23 H -0.27 -15.70 7.11 99.48 0.71 -14.99 16 24 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 25 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 1.04 7.92 -2.39 -0.02 1.02 16 27 H 0.04 0.83 7.90 -2.38 -0.02 0.81 16 28 H 0.06 0.82 7.23 -2.39 -0.02 0.80 16 29 H 0.08 0.82 7.92 -2.39 -0.02 0.80 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 2.74 8.05 -2.39 -0.02 2.72 16 32 H 0.06 2.28 8.05 -2.38 -0.02 2.27 16 33 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.67 6.76 -2.39 -0.02 1.65 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.41 8.42 6.84 -92.71 -0.63 7.79 16 37 H 0.16 2.80 6.42 -2.91 -0.02 2.79 16 38 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 40 H 0.11 5.41 5.64 -2.91 -0.02 5.39 16 41 H 0.29 16.32 8.31 -92.70 -0.77 15.55 16 Total: -1.00 -81.26 340.51 5.70 -75.56 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.41 Total: 15.84 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 4.80 Total: -25.67 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -1.74 Total: -77.91 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: 0.25 Total: -41.82 kcal Atomic # 14 Polarization: 52.04 SS G_CDS: 1.96 Total: 54.00 kcal Total: -81.26 5.70 -75.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857673751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.226 kcal (2) G-P(sol) polarization free energy of solvation -81.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds