Wall clock time and date at job start Tue Mar 31 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 115.56128 * 2 1 4 4 C 1.52997 * 117.50114 * 214.30535 * 2 1 3 5 5 C 1.52997 * 60.00142 * 252.51251 * 4 2 1 6 6 C 1.52999 * 117.51874 * 107.48110 * 5 4 2 7 7 N 1.46503 * 117.49745 * 252.51004 * 5 4 2 8 8 C 1.34770 * 119.99918 * 133.09095 * 7 5 4 9 9 O 1.21593 * 120.00332 * 4.43686 * 8 7 5 10 10 C 1.47537 * 120.00074 * 184.44623 * 8 7 5 11 11 C 1.39668 * 120.19470 * 0.26656 * 10 8 7 12 12 C 1.37833 * 119.91941 * 180.27796 * 11 10 8 13 13 C 1.38570 * 120.32031 * 359.72478 * 12 11 10 14 14 C 1.38024 * 120.40294 * 0.02562 * 13 12 11 15 15 C 1.38834 * 120.07345 * 359.97438 * 14 13 12 16 16 O 1.35524 * 120.16049 * 180.02562 * 15 14 13 17 17 C 1.34807 * 117.00172 * 5.32798 * 16 15 14 18 18 H 1.08006 * 120.00141 * 354.57125 * 17 16 15 19 19 C 1.38698 * 119.99865 * 174.29779 * 17 16 15 20 20 N 1.31518 * 120.00332 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00044 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46824 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47303 * 119.99700 * 21 19 17 24 24 H 1.48497 * 109.47144 * 239.99686 * 21 19 17 25 25 H 1.08996 * 109.47336 * 274.31406 * 1 2 3 26 26 H 1.09005 * 109.47071 * 34.31451 * 1 2 3 27 27 H 1.08996 * 109.46866 * 154.31210 * 1 2 3 28 28 H 1.09001 * 109.46666 * 205.68909 * 3 2 1 29 29 H 1.08993 * 109.46729 * 325.68383 * 3 2 1 30 30 H 1.08993 * 109.47104 * 85.68643 * 3 2 1 31 31 H 1.09001 * 117.49971 * 145.01745 * 4 2 1 32 32 H 1.09004 * 117.49910 * 0.02562 * 4 2 1 33 33 H 1.08993 * 109.47366 * 211.90264 * 6 5 4 34 34 H 1.09002 * 109.46953 * 331.90330 * 6 5 4 35 35 H 1.09000 * 109.46937 * 91.90169 * 6 5 4 36 36 H 0.97001 * 119.99904 * 313.08726 * 7 5 4 37 37 H 1.08004 * 120.04234 * 0.02562 * 11 10 8 38 38 H 1.07991 * 119.83855 * 179.70579 * 12 11 10 39 39 H 1.08004 * 119.79996 * 179.97438 * 13 12 11 40 40 H 1.08007 * 119.96543 * 180.02562 * 14 13 12 41 41 H 0.96999 * 120.00549 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1209 0.7651 6 6 1.3588 -2.1558 1.4721 7 7 3.4932 -0.7905 1.4416 8 6 3.4985 0.0923 2.4599 9 8 2.4509 0.5533 2.8703 10 6 4.7754 0.4995 3.0766 11 6 5.9816 -0.0231 2.6046 12 6 7.1708 0.3569 3.1887 13 6 7.1769 1.2602 4.2395 14 6 5.9931 1.7888 4.7131 15 6 4.7857 1.4176 4.1370 16 8 3.6224 1.9359 4.6002 17 6 3.7120 2.8900 5.5484 18 1 4.6739 3.1460 5.9677 19 6 2.5697 3.5467 5.9816 20 7 1.3992 3.2391 5.4669 21 14 2.6940 4.8692 7.2950 22 1 4.1121 5.0259 7.7069 23 1 2.1910 6.1561 6.7509 24 1 1.8777 4.4765 8.4717 25 1 -0.3634 0.0773 1.0247 26 1 -0.3633 0.8488 -0.5794 27 1 -0.3633 -0.9261 -0.4454 28 1 3.1824 1.3084 -0.4455 29 1 1.5812 2.0742 -0.5793 30 1 2.2772 1.7414 1.0247 31 1 3.1716 -0.8752 -1.2682 32 1 1.6113 -1.8584 -1.2685 33 1 0.9969 -1.7428 2.4136 34 1 0.5104 -2.4080 0.8359 35 1 1.9440 -3.0538 1.6702 36 1 4.3215 -1.2071 1.1565 37 1 5.9822 -0.7271 1.7856 38 1 8.1023 -0.0516 2.8259 39 1 8.1136 1.5518 4.6913 40 1 6.0061 2.4927 5.5322 41 1 0.6003 3.6981 5.7700 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857673752.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:52 Heat of formation + Delta-G solvation = -11.421213 kcal Electronic energy + Delta-G solvation = -23550.181263 eV Core-core repulsion = 20203.841520 eV Total energy + Delta-G solvation = -3346.339743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.95827 -38.89732 -37.02614 -36.26632 -32.91323 -32.31781 -30.55892 -29.42879 -28.89613 -27.72986 -26.52947 -25.37420 -23.30710 -21.62481 -20.67417 -20.08819 -18.18759 -17.79713 -17.47452 -16.08532 -15.56839 -14.83875 -14.65851 -14.40759 -14.14817 -13.97051 -13.77701 -13.53080 -13.21591 -13.06652 -12.68308 -12.48417 -12.18131 -12.08628 -11.83317 -11.74353 -11.70318 -11.57523 -11.30215 -11.09654 -10.91248 -10.80400 -10.77482 -10.44020 -9.91040 -9.53634 -9.38270 -8.87344 -8.71843 -8.34436 -8.24956 -7.29430 -6.43346 -4.03149 1.74013 2.33018 3.12212 3.13031 3.18678 3.60014 3.78206 3.89158 3.94229 4.65392 4.80903 4.89530 5.06167 5.13015 5.19246 5.34885 5.47961 5.53477 5.70321 5.77195 5.79302 5.87895 5.90553 5.96844 6.04319 6.09542 6.13756 6.19829 6.23053 6.32840 6.47159 6.56022 6.57876 6.70499 6.81545 6.93424 7.07400 7.15732 7.25618 7.30934 7.70788 7.93624 8.21667 8.96579 9.20021 9.69098 10.70276 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.005984 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.770209 B = 4677.880885 C = 6169.429897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C -0.120 4.120 4 C -0.178 4.178 5 C 0.114 3.886 6 C -0.120 4.120 7 N -0.715 5.715 8 C 0.558 3.442 9 O -0.490 6.490 10 C -0.226 4.226 11 C -0.039 4.039 12 C -0.231 4.231 13 C -0.051 4.051 14 C -0.239 4.239 15 C 0.189 3.811 16 O -0.123 6.123 17 C -0.403 4.403 18 H 0.093 0.907 19 C 0.045 3.955 20 N -0.831 5.831 21 Si 0.939 3.061 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.392 0.608 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 -7.302 -9.371 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.105 4.105 3 C -0.177 4.177 4 C -0.215 4.215 5 C 0.026 3.974 6 C -0.179 4.179 7 N -0.369 5.369 8 C 0.348 3.652 9 O -0.363 6.363 10 C -0.231 4.231 11 C -0.058 4.058 12 C -0.250 4.250 13 C -0.070 4.070 14 C -0.258 4.258 15 C 0.130 3.870 16 O -0.021 6.021 17 C -0.479 4.479 18 H 0.111 0.889 19 C -0.163 4.163 20 N -0.463 5.463 21 Si 0.764 3.236 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.227 0.773 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.787 -6.883 -9.060 11.714 hybrid contribution 0.783 0.410 0.494 1.013 sum 3.570 -6.473 -8.565 11.314 Atomic orbital electron populations 1.21332 0.91996 1.01020 1.02559 1.21767 0.94889 0.91820 1.02031 1.21417 0.98709 0.93553 1.03991 1.23651 1.02716 1.02109 0.93059 1.20564 0.88252 0.99257 0.89300 1.21487 0.98123 0.96936 1.01323 1.45276 1.08231 1.46933 1.36499 1.18175 0.89407 0.78562 0.79090 1.90930 1.32426 1.52866 1.60063 1.18894 0.92899 1.08314 1.03030 1.20773 0.91586 0.96487 0.96981 1.20457 0.96943 1.05444 1.02174 1.20890 0.96882 0.94451 0.94787 1.21161 0.91980 1.07242 1.05401 1.19280 0.86749 0.90905 0.90112 1.84176 1.24165 1.45912 1.47877 1.21526 0.95793 1.14621 1.15969 0.88919 1.25367 0.94306 0.98132 0.98470 1.70135 0.98167 1.38763 1.39188 0.85683 0.78911 0.79577 0.79453 1.19003 1.20039 1.20043 0.91420 0.92396 0.92868 0.93284 0.92872 0.89907 0.88817 0.88438 0.91114 0.91893 0.92524 0.77327 0.87124 0.87347 0.87244 0.85115 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 8.73 37.16 0.32 -1.23 16 2 C -0.10 -1.59 2.46 -154.51 -0.38 -1.97 16 3 C -0.12 -2.06 8.83 37.16 0.33 -1.73 16 4 C -0.18 -2.17 9.43 -26.73 -0.25 -2.42 16 5 C 0.11 1.73 2.22 -131.82 -0.29 1.44 16 6 C -0.12 -1.73 9.35 37.16 0.35 -1.38 16 7 N -0.71 -11.84 5.04 -48.64 -0.25 -12.08 16 8 C 0.56 12.10 6.49 -12.47 -0.08 12.02 16 9 O -0.49 -12.96 13.32 -16.57 -0.22 -13.18 16 10 C -0.23 -4.91 5.89 -104.81 -0.62 -5.53 16 11 C -0.04 -0.68 9.53 -39.20 -0.37 -1.05 16 12 C -0.23 -3.82 10.03 -39.61 -0.40 -4.21 16 13 C -0.05 -0.92 10.03 -39.54 -0.40 -1.31 16 14 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 15 C 0.19 4.69 6.66 -38.60 -0.26 4.43 16 16 O -0.12 -3.61 7.84 -21.05 -0.16 -3.77 16 17 C -0.40 -11.37 9.49 30.90 0.29 -11.08 16 18 H 0.09 2.39 5.21 -52.48 -0.27 2.12 16 19 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 20 N -0.83 -24.89 13.67 55.48 0.76 -24.13 16 21 Si 0.94 20.54 29.55 -169.99 -5.02 15.51 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 0.75 7.92 -51.93 -0.41 0.34 16 27 H 0.05 0.61 7.28 -51.93 -0.38 0.23 16 28 H 0.05 0.78 7.90 -51.93 -0.41 0.37 16 29 H 0.05 0.82 7.92 -51.93 -0.41 0.41 16 30 H 0.08 1.81 5.73 -51.93 -0.30 1.51 16 31 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 32 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 0.75 6.98 -51.93 -0.36 0.39 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.39 5.31 6.88 -40.82 -0.28 5.03 16 37 H 0.11 1.49 6.42 -52.48 -0.34 1.15 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 40 H 0.13 2.79 5.64 -52.48 -0.30 2.50 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -33.21 337.34 -7.57 -40.77 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.54 Total: 10.18 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.21 Total: -18.38 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.51 Total: -36.21 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.39 Total: -16.95 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.21 -7.57 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857673752.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.350 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds