Wall clock time and date at job start Tue Mar 31 2020 05:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 115.56128 * 2 1 4 4 C 1.52997 * 117.50114 * 214.30535 * 2 1 3 5 5 C 1.52997 * 60.00142 * 252.51251 * 4 2 1 6 6 C 1.52999 * 117.51874 * 107.48110 * 5 4 2 7 7 N 1.46503 * 117.49745 * 252.51004 * 5 4 2 8 8 C 1.34770 * 119.99918 * 133.09095 * 7 5 4 9 9 O 1.21593 * 120.00332 * 4.43686 * 8 7 5 10 10 C 1.47537 * 120.00074 * 184.44623 * 8 7 5 11 11 C 1.39668 * 120.19470 * 0.26656 * 10 8 7 12 12 C 1.37833 * 119.91941 * 180.27796 * 11 10 8 13 13 C 1.38570 * 120.32031 * 359.72478 * 12 11 10 14 14 C 1.38024 * 120.40294 * 0.02562 * 13 12 11 15 15 C 1.38834 * 120.07345 * 359.97438 * 14 13 12 16 16 O 1.35524 * 120.16049 * 180.02562 * 15 14 13 17 17 C 1.34807 * 117.00172 * 5.32798 * 16 15 14 18 18 H 1.08006 * 120.00141 * 354.57125 * 17 16 15 19 19 C 1.38698 * 119.99865 * 174.29779 * 17 16 15 20 20 N 1.31518 * 120.00332 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00044 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46824 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47303 * 119.99700 * 21 19 17 24 24 H 1.48497 * 109.47144 * 239.99686 * 21 19 17 25 25 H 1.08996 * 109.47336 * 274.31406 * 1 2 3 26 26 H 1.09005 * 109.47071 * 34.31451 * 1 2 3 27 27 H 1.08996 * 109.46866 * 154.31210 * 1 2 3 28 28 H 1.09001 * 109.46666 * 205.68909 * 3 2 1 29 29 H 1.08993 * 109.46729 * 325.68383 * 3 2 1 30 30 H 1.08993 * 109.47104 * 85.68643 * 3 2 1 31 31 H 1.09001 * 117.49971 * 145.01745 * 4 2 1 32 32 H 1.09004 * 117.49910 * 0.02562 * 4 2 1 33 33 H 1.08993 * 109.47366 * 211.90264 * 6 5 4 34 34 H 1.09002 * 109.46953 * 331.90330 * 6 5 4 35 35 H 1.09000 * 109.46937 * 91.90169 * 6 5 4 36 36 H 0.97001 * 119.99904 * 313.08726 * 7 5 4 37 37 H 1.08004 * 120.04234 * 0.02562 * 11 10 8 38 38 H 1.07991 * 119.83855 * 179.70579 * 12 11 10 39 39 H 1.08004 * 119.79996 * 179.97438 * 13 12 11 40 40 H 1.08007 * 119.96543 * 180.02562 * 14 13 12 41 41 H 0.96999 * 120.00549 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1209 0.7651 6 6 1.3588 -2.1558 1.4721 7 7 3.4932 -0.7905 1.4416 8 6 3.4985 0.0923 2.4599 9 8 2.4509 0.5533 2.8703 10 6 4.7754 0.4995 3.0766 11 6 5.9816 -0.0231 2.6046 12 6 7.1708 0.3569 3.1887 13 6 7.1769 1.2602 4.2395 14 6 5.9931 1.7888 4.7131 15 6 4.7857 1.4176 4.1370 16 8 3.6224 1.9359 4.6002 17 6 3.7120 2.8900 5.5484 18 1 4.6739 3.1460 5.9677 19 6 2.5697 3.5467 5.9816 20 7 1.3992 3.2391 5.4669 21 14 2.6940 4.8692 7.2950 22 1 4.1121 5.0259 7.7069 23 1 2.1910 6.1561 6.7509 24 1 1.8777 4.4765 8.4717 25 1 -0.3634 0.0773 1.0247 26 1 -0.3633 0.8488 -0.5794 27 1 -0.3633 -0.9261 -0.4454 28 1 3.1824 1.3084 -0.4455 29 1 1.5812 2.0742 -0.5793 30 1 2.2772 1.7414 1.0247 31 1 3.1716 -0.8752 -1.2682 32 1 1.6113 -1.8584 -1.2685 33 1 0.9969 -1.7428 2.4136 34 1 0.5104 -2.4080 0.8359 35 1 1.9440 -3.0538 1.6702 36 1 4.3215 -1.2071 1.1565 37 1 5.9822 -0.7271 1.7856 38 1 8.1023 -0.0516 2.8259 39 1 8.1136 1.5518 4.6913 40 1 6.0061 2.4927 5.5322 41 1 0.6003 3.6981 5.7700 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857673752.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:51 Heat of formation + Delta-G solvation = -33.460608 kcal Electronic energy + Delta-G solvation = -23551.136963 eV Core-core repulsion = 20203.841520 eV Total energy + Delta-G solvation = -3347.295443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.46821 -40.44382 -38.63317 -37.93967 -34.48343 -34.26810 -32.03961 -30.77277 -30.54888 -28.85354 -27.79236 -27.36245 -24.87139 -23.25921 -21.93043 -21.59294 -19.89788 -19.28403 -19.13259 -17.79023 -16.93517 -16.37061 -16.24243 -16.07252 -15.75830 -15.54171 -15.32759 -14.98578 -14.69057 -14.51355 -14.21599 -14.03255 -13.55046 -13.48076 -13.34326 -13.17283 -12.98567 -12.93088 -12.67484 -12.63154 -12.53621 -12.32967 -12.10888 -12.01664 -11.40198 -11.16664 -10.84253 -10.67367 -10.34579 -9.87535 -9.68094 -9.02681 -8.44141 -6.14892 0.15134 0.72974 1.31159 1.41640 1.50734 2.14830 2.17652 2.24214 2.73715 2.89066 3.24075 3.48060 3.62103 3.79189 3.94311 4.05109 4.09563 4.16884 4.29127 4.52215 4.53385 4.66965 4.69297 4.77063 4.79971 4.85911 4.88756 4.98338 4.99103 5.04594 5.06949 5.08542 5.15145 5.30399 5.35104 5.42288 5.49271 5.61641 5.69699 5.81140 5.96542 6.17404 6.80299 6.95190 7.63443 7.81558 8.76051 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.005984 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.770209 B = 4677.880885 C = 6169.429897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.135 4.135 3 C -0.113 4.113 4 C -0.124 4.124 5 C 0.084 3.916 6 C -0.115 4.115 7 N -0.693 5.693 8 C 0.554 3.446 9 O -0.550 6.550 10 C -0.245 4.245 11 C -0.032 4.032 12 C -0.201 4.201 13 C -0.042 4.042 14 C -0.259 4.259 15 C 0.148 3.852 16 O -0.186 6.186 17 C -0.426 4.426 18 H 0.104 0.896 19 C -0.021 4.021 20 N -0.902 5.902 21 Si 1.020 2.980 22 H -0.246 1.246 23 H -0.269 1.269 24 H -0.269 1.269 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.024 0.976 31 H 0.112 0.888 32 H 0.132 0.868 33 H 0.023 0.977 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.410 0.590 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.121 0.879 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.836 -9.526 -11.945 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.136 4.136 3 C -0.170 4.170 4 C -0.162 4.162 5 C -0.003 4.003 6 C -0.173 4.173 7 N -0.347 5.347 8 C 0.343 3.657 9 O -0.427 6.427 10 C -0.249 4.249 11 C -0.050 4.050 12 C -0.220 4.220 13 C -0.060 4.060 14 C -0.279 4.279 15 C 0.093 3.907 16 O -0.089 6.089 17 C -0.502 4.502 18 H 0.122 0.878 19 C -0.221 4.221 20 N -0.538 5.538 21 Si 0.839 3.161 22 H -0.169 1.169 23 H -0.194 1.194 24 H -0.194 1.194 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.042 0.958 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.248 0.752 37 H 0.176 0.824 38 H 0.181 0.819 39 H 0.170 0.830 40 H 0.139 0.861 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.610 -9.172 -11.687 16.261 hybrid contribution -0.033 0.853 1.045 1.350 sum 6.578 -8.319 -10.643 15.024 Atomic orbital electron populations 1.21303 0.91500 1.03018 1.00690 1.21850 0.95598 0.91348 1.04781 1.21285 0.99916 0.95380 1.00447 1.23748 1.02893 0.99485 0.90044 1.20901 0.87958 0.99754 0.91701 1.21444 0.99214 0.96973 0.99663 1.45003 1.09894 1.45094 1.34732 1.18389 0.88720 0.78805 0.79747 1.90923 1.34463 1.55194 1.62129 1.19392 0.94940 1.08005 1.02592 1.21314 0.89952 0.96182 0.97583 1.21164 0.98589 1.02524 0.99682 1.21414 0.96816 0.93293 0.94512 1.21296 0.92570 1.08175 1.05812 1.20088 0.87128 0.91857 0.91607 1.84183 1.26526 1.48148 1.50040 1.22032 0.96575 1.15164 1.16456 0.87828 1.26717 0.93562 1.00689 1.01103 1.70331 0.99226 1.41680 1.42573 0.84529 0.79814 0.75852 0.75916 1.16945 1.19419 1.19381 0.95058 0.91864 0.89563 0.92139 0.92018 0.95675 0.87018 0.84982 0.95774 0.89127 0.90866 0.75213 0.82351 0.81935 0.82999 0.86095 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.01 8.73 71.98 0.63 -2.38 16 2 C -0.13 -4.03 2.46 -52.18 -0.13 -4.16 16 3 C -0.11 -4.02 8.83 71.98 0.64 -3.38 16 4 C -0.12 -2.50 9.43 30.59 0.29 -2.21 16 5 C 0.08 2.44 2.22 3.60 0.01 2.45 16 6 C -0.11 -3.22 9.35 71.98 0.67 -2.55 16 7 N -0.69 -22.25 5.04 -426.05 -2.15 -24.40 16 8 C 0.55 25.08 6.49 86.70 0.56 25.64 16 9 O -0.55 -31.97 13.32 16.89 0.23 -31.75 16 10 C -0.24 -10.74 5.89 -19.99 -0.12 -10.86 16 11 C -0.03 -0.98 9.53 22.52 0.21 -0.76 16 12 C -0.20 -5.49 10.03 22.25 0.22 -5.26 16 13 C -0.04 -1.35 10.03 22.30 0.22 -1.12 16 14 C -0.26 -11.30 9.16 22.36 0.20 -11.10 16 15 C 0.15 7.75 6.66 22.91 0.15 7.90 16 16 O -0.19 -11.97 7.84 0.87 0.01 -11.96 16 17 C -0.43 -26.10 9.49 67.93 0.64 -25.45 16 18 H 0.10 5.73 5.21 -2.91 -0.02 5.72 16 19 C -0.02 -1.28 5.49 84.85 0.47 -0.82 16 20 N -0.90 -59.47 13.67 21.62 0.30 -59.18 16 21 Si 1.02 44.89 29.55 68.60 2.03 46.92 16 22 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 25 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.65 7.92 -2.38 -0.02 1.63 16 27 H 0.09 1.77 7.28 -2.39 -0.02 1.75 16 28 H 0.06 1.90 7.90 -2.39 -0.02 1.88 16 29 H 0.06 1.99 7.92 -2.39 -0.02 1.97 16 30 H 0.02 1.18 5.73 -2.39 -0.01 1.16 16 31 H 0.11 1.91 8.05 -2.39 -0.02 1.89 16 32 H 0.13 1.85 8.05 -2.39 -0.02 1.83 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.98 6.98 -2.39 -0.02 1.96 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.41 9.69 6.88 -92.71 -0.64 9.05 16 37 H 0.16 3.29 6.42 -2.91 -0.02 3.27 16 38 H 0.16 2.90 8.06 -2.92 -0.02 2.88 16 39 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 40 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 41 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -87.34 337.34 5.50 -81.84 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.41 Total: 32.60 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 4.68 Total: -34.07 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -1.85 Total: -83.58 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: 0.23 Total: -43.71 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -87.34 5.50 -81.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857673752.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.375 kcal (2) G-P(sol) polarization free energy of solvation -87.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds