Wall clock time and date at job start Tue Mar 31 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38264 * 119.99886 * 2 1 4 4 C 1.38211 * 119.99666 * 180.27583 * 3 2 1 5 5 C 1.38265 * 120.00100 * 359.74803 * 4 3 2 6 6 C 1.38207 * 119.99785 * 359.97438 * 5 4 3 7 7 C 1.38212 * 119.99921 * 179.74967 * 2 1 3 8 8 C 1.50693 * 120.00324 * 359.97438 * 7 2 1 9 9 O 1.45197 * 109.47600 * 179.72698 * 8 7 2 10 10 C 1.34637 * 117.00183 * 180.02562 * 9 8 7 11 11 O 1.21504 * 120.00251 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00030 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00258 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47269 * 184.79147 * 13 12 10 15 15 C 1.50694 * 115.55114 * 294.81128 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20873 * 15 14 13 17 17 C 1.37875 * 120.00314 * 274.92789 * 15 14 13 18 18 N 1.31509 * 119.99913 * 355.42420 * 17 15 14 19 19 Si 1.86807 * 120.00040 * 175.41703 * 17 15 14 20 20 H 1.48494 * 109.47052 * 60.00642 * 19 17 15 21 21 H 1.48500 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47106 * 300.00083 * 19 17 15 23 23 C 1.53003 * 117.49834 * 80.48431 * 14 13 12 24 24 C 1.53006 * 117.49908 * 149.14426 * 14 13 12 25 25 H 1.08995 * 109.47312 * 270.25052 * 1 2 3 26 26 H 1.09003 * 109.47175 * 30.25035 * 1 2 3 27 27 H 1.08999 * 109.47027 * 150.24780 * 1 2 3 28 28 H 1.07995 * 119.99934 * 0.04793 * 3 2 1 29 29 H 1.07999 * 119.99986 * 179.77143 * 4 3 2 30 30 H 1.08003 * 119.99770 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.99893 * 179.97438 * 6 5 4 32 32 H 1.09009 * 109.47061 * 59.72383 * 8 7 2 33 33 H 1.08998 * 109.47284 * 299.72969 * 8 7 2 34 34 H 0.96999 * 119.99637 * 359.97438 * 12 10 9 35 35 H 1.09001 * 109.47395 * 64.78624 * 13 12 10 36 36 H 1.09007 * 109.47080 * 304.78945 * 13 12 10 37 37 H 0.97001 * 119.99960 * 184.99387 * 18 17 15 38 38 H 1.09003 * 117.50034 * 214.99852 * 23 14 13 39 39 H 1.09002 * 117.49971 * 0.02686 * 23 14 13 40 40 H 1.08996 * 117.49810 * 359.97342 * 24 14 13 41 41 H 1.08995 * 117.50078 * 144.97442 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0058 5 6 4.2717 -0.0001 -0.0063 6 6 3.5806 -1.1969 -0.0005 7 6 2.1980 -1.1970 0.0052 8 6 1.4446 -2.5020 0.0115 9 8 2.3881 -3.6057 0.0097 10 6 1.8735 -4.8498 0.0142 11 8 0.6689 -5.0090 0.0200 12 7 2.6945 -5.9187 0.0134 13 6 2.1346 -7.2724 0.0177 14 6 3.2683 -8.2929 0.1362 15 6 4.2218 -8.3434 -1.0296 16 1 5.1430 -7.7804 -0.9986 17 6 3.9210 -9.1128 -2.1334 18 7 2.8475 -9.8725 -2.1326 19 14 5.0381 -9.0761 -3.6302 20 1 6.4002 -9.5224 -3.2423 21 1 4.4977 -9.9840 -4.6737 22 1 5.1041 -7.6922 -4.1647 23 6 3.8428 -8.5519 1.5305 24 6 2.9629 -9.6078 0.8565 25 1 -0.3634 0.0045 1.0276 26 1 -0.3634 0.8878 -0.5177 27 1 -0.3633 -0.8922 -0.5100 28 1 1.6583 2.1327 0.0008 29 1 4.1204 2.1326 -0.0095 30 1 5.3517 0.0000 -0.0112 31 1 4.1206 -2.1323 -0.0013 32 1 0.8139 -2.5617 -0.8755 33 1 0.8219 -2.5578 0.9044 34 1 3.6561 -5.7916 0.0091 35 1 1.5880 -7.4426 -0.9098 36 1 1.4567 -7.3825 0.8643 37 1 2.6743 -10.4681 -2.8784 38 1 4.9104 -8.7589 1.6044 39 1 3.4127 -7.9956 2.3634 40 1 1.9544 -9.7456 1.2463 41 1 3.4513 -10.5093 0.4869 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859146266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:55 Heat of formation + Delta-G solvation = -43.072680 kcal Electronic energy + Delta-G solvation = -22174.143030 eV Core-core repulsion = 18826.430777 eV Total energy + Delta-G solvation = -3347.712254 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.20468 -39.34441 -37.15910 -35.90471 -33.54482 -33.18389 -31.99428 -31.72478 -27.64935 -26.71979 -25.91722 -25.09421 -22.32209 -21.24173 -20.91847 -20.53192 -19.52976 -18.04844 -16.95570 -16.34453 -16.09146 -15.98895 -15.22429 -14.85122 -14.72664 -14.35203 -14.16153 -13.66658 -13.58534 -13.23818 -13.14877 -12.78712 -12.49206 -12.29915 -12.18635 -11.88714 -11.61617 -11.13244 -11.01051 -10.99685 -10.97034 -10.58900 -10.54349 -10.28648 -10.11812 -9.56226 -9.09652 -8.90279 -8.72226 -8.53169 -8.38937 -8.18972 -6.09979 -4.20153 1.16776 1.27323 2.58937 3.26640 3.32477 3.34368 3.35760 3.60742 4.33490 4.48025 4.66094 4.73811 4.90458 4.97682 5.09603 5.17631 5.29970 5.30686 5.32585 5.43476 5.47691 5.56810 5.68689 5.89274 5.94913 6.00953 6.26216 6.29304 6.37202 6.40542 6.45376 6.48498 6.62839 6.69973 6.86447 6.88838 7.08106 7.14533 7.32740 7.49401 7.78956 8.15518 8.29971 8.80984 8.91016 9.47518 10.97105 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019613 B = 0.003422 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.257899 B = 8179.466796 C = 8712.138474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.093 4.093 7 C -0.090 4.090 8 C 0.131 3.869 9 O -0.373 6.373 10 C 0.640 3.360 11 O -0.587 6.587 12 N -0.680 5.680 13 C 0.179 3.821 14 C 0.022 3.978 15 C -0.502 4.502 16 H 0.061 0.939 17 C 0.074 3.926 18 N -0.875 5.875 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.210 4.210 24 C -0.139 4.139 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.408 0.592 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.691 18.375 4.723 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.079 4.079 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.144 4.144 6 C -0.111 4.111 7 C -0.091 4.091 8 C 0.057 3.943 9 O -0.288 6.288 10 C 0.392 3.608 11 O -0.477 6.477 12 N -0.337 5.337 13 C 0.058 3.942 14 C 0.021 3.979 15 C -0.540 4.540 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.511 5.511 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.247 4.247 24 C -0.177 4.177 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.153 0.847 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.243 0.757 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.462 18.241 4.571 18.862 hybrid contribution 0.934 -0.033 -0.904 1.300 sum -0.528 18.208 3.667 18.582 Atomic orbital electron populations 1.20875 0.91060 1.03209 1.02684 1.19593 0.96063 0.92109 1.00178 1.20936 0.94275 0.97076 1.01700 1.21153 0.94299 0.98083 1.00185 1.21188 1.00051 0.92393 1.00771 1.21102 0.93516 0.98836 0.97608 1.19544 0.94403 0.92834 1.02276 1.21483 0.89370 0.80505 1.02976 1.86157 1.40456 1.14368 1.87773 1.18202 0.84817 0.80632 0.77166 1.90944 1.13694 1.85919 1.57170 1.44844 1.09875 1.03797 1.75173 1.21089 0.95525 0.77006 1.00622 1.19020 0.95202 0.93414 0.90222 1.20323 1.04524 1.29961 0.99162 0.92119 1.24987 0.94850 0.95023 0.98173 1.69973 1.25553 1.23749 1.31798 0.86674 0.80747 0.78116 0.82568 1.20230 1.21252 1.20102 1.23036 0.98698 1.05965 0.97004 1.22478 0.97620 0.94591 1.03005 0.90806 0.91278 0.91125 0.85971 0.86153 0.85916 0.84710 0.89944 0.90033 0.75735 0.91129 0.93813 0.92752 0.90248 0.91615 0.91708 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.60 36.00 0.35 -0.69 16 2 C -0.08 -0.85 5.88 -104.62 -0.62 -1.47 16 3 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 4 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 5 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 6 C -0.09 -1.15 9.38 -39.59 -0.37 -1.52 16 7 C -0.09 -1.13 5.88 -104.63 -0.62 -1.75 16 8 C 0.13 1.84 4.59 36.00 0.17 2.00 16 9 O -0.37 -6.22 8.74 -40.32 -0.35 -6.57 16 10 C 0.64 12.61 8.75 54.06 0.47 13.09 16 11 O -0.59 -13.03 16.13 -19.27 -0.31 -13.34 16 12 N -0.68 -13.58 5.48 -65.28 -0.36 -13.94 16 13 C 0.18 4.01 5.50 -4.05 -0.02 3.99 16 14 C 0.02 0.51 1.47 -155.66 -0.23 0.28 16 15 C -0.50 -12.78 8.59 -34.44 -0.30 -13.07 16 16 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 17 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 18 N -0.87 -23.93 12.65 55.43 0.70 -23.23 16 19 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 C -0.21 -4.30 9.96 -26.69 -0.27 -4.57 16 24 C -0.14 -3.12 9.14 -26.69 -0.24 -3.36 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.07 0.63 6.63 -51.93 -0.34 0.28 16 28 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 30 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 31 H 0.14 1.72 6.99 -52.48 -0.37 1.35 16 32 H 0.08 1.14 7.47 -51.92 -0.39 0.76 16 33 H 0.08 1.10 8.13 -51.93 -0.42 0.67 16 34 H 0.41 7.60 8.44 -40.82 -0.34 7.25 16 35 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.04 0.96 8.09 -51.92 -0.42 0.54 16 37 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 38 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -29.04 350.85 -9.06 -38.10 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.06 Total: 8.28 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -2.95 Total: -10.03 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.34 Total: -37.17 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.66 Total: -19.90 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.04 -9.06 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859146266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.972 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds