Wall clock time and date at job start Tue Mar 31 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38264 * 119.99886 * 2 1 4 4 C 1.38211 * 119.99666 * 180.27583 * 3 2 1 5 5 C 1.38265 * 120.00100 * 359.74803 * 4 3 2 6 6 C 1.38207 * 119.99785 * 359.97438 * 5 4 3 7 7 C 1.38212 * 119.99921 * 179.74967 * 2 1 3 8 8 C 1.50693 * 120.00324 * 359.97438 * 7 2 1 9 9 O 1.45197 * 109.47600 * 179.72698 * 8 7 2 10 10 C 1.34637 * 117.00183 * 180.02562 * 9 8 7 11 11 O 1.21504 * 120.00251 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00030 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00258 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47269 * 184.79147 * 13 12 10 15 15 C 1.50694 * 115.55114 * 294.81128 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20873 * 15 14 13 17 17 C 1.37875 * 120.00314 * 274.92789 * 15 14 13 18 18 N 1.31509 * 119.99913 * 355.42420 * 17 15 14 19 19 Si 1.86807 * 120.00040 * 175.41703 * 17 15 14 20 20 H 1.48494 * 109.47052 * 60.00642 * 19 17 15 21 21 H 1.48500 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47106 * 300.00083 * 19 17 15 23 23 C 1.53003 * 117.49834 * 80.48431 * 14 13 12 24 24 C 1.53006 * 117.49908 * 149.14426 * 14 13 12 25 25 H 1.08995 * 109.47312 * 270.25052 * 1 2 3 26 26 H 1.09003 * 109.47175 * 30.25035 * 1 2 3 27 27 H 1.08999 * 109.47027 * 150.24780 * 1 2 3 28 28 H 1.07995 * 119.99934 * 0.04793 * 3 2 1 29 29 H 1.07999 * 119.99986 * 179.77143 * 4 3 2 30 30 H 1.08003 * 119.99770 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.99893 * 179.97438 * 6 5 4 32 32 H 1.09009 * 109.47061 * 59.72383 * 8 7 2 33 33 H 1.08998 * 109.47284 * 299.72969 * 8 7 2 34 34 H 0.96999 * 119.99637 * 359.97438 * 12 10 9 35 35 H 1.09001 * 109.47395 * 64.78624 * 13 12 10 36 36 H 1.09007 * 109.47080 * 304.78945 * 13 12 10 37 37 H 0.97001 * 119.99960 * 184.99387 * 18 17 15 38 38 H 1.09003 * 117.50034 * 214.99852 * 23 14 13 39 39 H 1.09002 * 117.49971 * 0.02686 * 23 14 13 40 40 H 1.08996 * 117.49810 * 359.97342 * 24 14 13 41 41 H 1.08995 * 117.50078 * 144.97442 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0058 5 6 4.2717 -0.0001 -0.0063 6 6 3.5806 -1.1969 -0.0005 7 6 2.1980 -1.1970 0.0052 8 6 1.4446 -2.5020 0.0115 9 8 2.3881 -3.6057 0.0097 10 6 1.8735 -4.8498 0.0142 11 8 0.6689 -5.0090 0.0200 12 7 2.6945 -5.9187 0.0134 13 6 2.1346 -7.2724 0.0177 14 6 3.2683 -8.2929 0.1362 15 6 4.2218 -8.3434 -1.0296 16 1 5.1430 -7.7804 -0.9986 17 6 3.9210 -9.1128 -2.1334 18 7 2.8475 -9.8725 -2.1326 19 14 5.0381 -9.0761 -3.6302 20 1 6.4002 -9.5224 -3.2423 21 1 4.4977 -9.9840 -4.6737 22 1 5.1041 -7.6922 -4.1647 23 6 3.8428 -8.5519 1.5305 24 6 2.9629 -9.6078 0.8565 25 1 -0.3634 0.0045 1.0276 26 1 -0.3634 0.8878 -0.5177 27 1 -0.3633 -0.8922 -0.5100 28 1 1.6583 2.1327 0.0008 29 1 4.1204 2.1326 -0.0095 30 1 5.3517 0.0000 -0.0112 31 1 4.1206 -2.1323 -0.0013 32 1 0.8139 -2.5617 -0.8755 33 1 0.8219 -2.5578 0.9044 34 1 3.6561 -5.7916 0.0091 35 1 1.5880 -7.4426 -0.9098 36 1 1.4567 -7.3825 0.8643 37 1 2.6743 -10.4681 -2.8784 38 1 4.9104 -8.7589 1.6044 39 1 3.4127 -7.9956 2.3634 40 1 1.9544 -9.7456 1.2463 41 1 3.4513 -10.5093 0.4869 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859146266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:53 Heat of formation + Delta-G solvation = -58.435849 kcal Electronic energy + Delta-G solvation = -22174.809227 eV Core-core repulsion = 18826.430777 eV Total energy + Delta-G solvation = -3348.378451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.59406 -40.34344 -38.84022 -37.43343 -35.20267 -34.03575 -33.94288 -32.63210 -28.78709 -28.00156 -27.33914 -26.70537 -23.36394 -22.90603 -21.98179 -21.75529 -21.33798 -19.63909 -18.25314 -17.87507 -17.69403 -17.08866 -16.64761 -16.22525 -15.86177 -15.75390 -15.55553 -15.09354 -14.80757 -14.48261 -14.31295 -13.97189 -13.68617 -13.52609 -13.41884 -13.14630 -12.95994 -12.89011 -12.80194 -12.38905 -12.02100 -11.94521 -11.91362 -11.86274 -11.75926 -11.38714 -10.96384 -10.45168 -10.16737 -9.96940 -9.72480 -9.53070 -8.09534 -6.23721 0.34881 0.46342 1.14053 1.43635 1.46077 1.51615 1.75602 2.42692 2.79573 3.16164 3.19875 3.55068 3.70699 3.93535 4.03978 4.16042 4.19961 4.21264 4.26764 4.44925 4.52260 4.61296 4.65413 4.69538 4.78836 4.83107 4.88056 4.92731 5.02774 5.11215 5.17874 5.29058 5.30516 5.43928 5.53926 5.58060 5.62737 5.68064 5.70199 5.77819 6.08717 6.35944 6.54503 6.83487 7.33302 7.46333 8.97060 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019613 B = 0.003422 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.257899 B = 8179.466796 C = 8712.138474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.085 4.085 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.133 4.133 6 C -0.115 4.115 7 C -0.111 4.111 8 C 0.130 3.870 9 O -0.366 6.366 10 C 0.644 3.356 11 O -0.613 6.613 12 N -0.677 5.677 13 C 0.195 3.805 14 C 0.000 4.000 15 C -0.508 4.508 16 H 0.062 0.938 17 C 0.027 3.973 18 N -0.905 5.905 19 Si 0.948 3.052 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.275 1.275 23 C -0.178 4.178 24 C -0.147 4.147 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.415 0.585 35 H 0.034 0.966 36 H 0.048 0.952 37 H 0.260 0.740 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.129 20.787 5.241 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.134 4.134 5 C -0.151 4.151 6 C -0.133 4.133 7 C -0.112 4.112 8 C 0.056 3.944 9 O -0.280 6.280 10 C 0.396 3.604 11 O -0.506 6.506 12 N -0.334 5.334 13 C 0.073 3.927 14 C -0.001 4.001 15 C -0.546 4.546 16 H 0.080 0.920 17 C -0.174 4.174 18 N -0.542 5.542 19 Si 0.774 3.226 20 H -0.194 1.194 21 H -0.216 1.216 22 H -0.200 1.200 23 C -0.215 4.215 24 C -0.185 4.185 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.168 0.832 29 H 0.167 0.833 30 H 0.158 0.842 31 H 0.140 0.860 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.251 0.749 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.610 20.681 5.098 21.309 hybrid contribution 0.683 -0.667 -1.034 1.407 sum 0.073 20.014 4.064 20.422 Atomic orbital electron populations 1.20924 0.89754 1.03746 1.03409 1.19870 0.97187 0.91849 0.99630 1.21319 0.94618 0.97644 1.00453 1.21544 0.94566 0.98784 0.98538 1.21431 1.01071 0.92141 1.00428 1.21139 0.93662 0.99311 0.99143 1.19534 0.94599 0.92559 1.04458 1.21686 0.89341 0.80338 1.03052 1.86178 1.40940 1.13684 1.87180 1.18207 0.84280 0.81381 0.76491 1.90922 1.14883 1.86525 1.58269 1.44665 1.10203 1.03273 1.75268 1.20704 0.95098 0.78044 0.98896 1.19037 0.95699 0.94104 0.91259 1.20642 1.04787 1.29240 0.99913 0.91958 1.25665 0.96097 0.95052 1.00587 1.70086 1.27084 1.24675 1.32388 0.85776 0.79416 0.77826 0.79581 1.19406 1.21562 1.20023 1.23024 0.98782 1.03811 0.95901 1.22405 0.98494 0.93823 1.03789 0.89933 0.89315 0.92032 0.83167 0.83268 0.84233 0.86014 0.90248 0.89742 0.74913 0.94744 0.93331 0.93105 0.89664 0.89258 0.90836 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.60 71.24 0.68 -1.19 16 2 C -0.09 -1.69 5.88 -19.87 -0.12 -1.80 16 3 C -0.12 -1.98 9.70 22.27 0.22 -1.77 16 4 C -0.12 -1.86 10.05 22.27 0.22 -1.64 16 5 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 6 C -0.11 -2.79 9.38 22.27 0.21 -2.59 16 7 C -0.11 -2.74 5.88 -19.87 -0.12 -2.86 16 8 C 0.13 3.66 4.59 71.23 0.33 3.99 16 9 O -0.37 -12.29 8.74 -55.46 -0.48 -12.77 16 10 C 0.64 25.53 8.75 129.79 1.14 26.67 16 11 O -0.61 -27.56 16.13 19.83 0.32 -27.24 16 12 N -0.68 -27.03 5.48 -590.86 -3.24 -30.27 16 13 C 0.20 8.81 5.50 86.38 0.48 9.28 16 14 C 0.00 -0.01 1.47 -52.93 -0.08 -0.09 16 15 C -0.51 -25.81 8.59 25.60 0.22 -25.59 16 16 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 17 C 0.03 1.43 5.43 84.65 0.46 1.89 16 18 N -0.91 -50.41 12.65 21.45 0.27 -50.14 16 19 Si 0.95 42.15 29.54 68.60 2.03 44.18 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C -0.18 -7.01 9.96 30.62 0.30 -6.70 16 24 C -0.15 -6.57 9.14 30.62 0.28 -6.29 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 27 H 0.06 1.05 6.63 -2.39 -0.02 1.04 16 28 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 29 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 30 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.12 3.17 6.99 -2.91 -0.02 3.15 16 32 H 0.08 2.25 7.47 -2.38 -0.02 2.23 16 33 H 0.08 2.29 8.13 -2.39 -0.02 2.27 16 34 H 0.41 15.30 8.44 -92.71 -0.78 14.52 16 35 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 2.12 8.09 -2.38 -0.02 2.10 16 37 H 0.26 14.01 8.32 -92.71 -0.77 13.24 16 38 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -62.08 350.85 3.58 -58.50 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.25 Total: 28.77 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 4.45 Total: -11.03 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -2.97 Total: -80.41 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.16 Total: -40.01 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -62.08 3.58 -58.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859146266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.063 kcal (2) G-P(sol) polarization free energy of solvation -62.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds