Wall clock time and date at job start Tue Mar 31 2020 06:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00231 * 2 1 4 4 N 1.46500 * 109.46819 * 124.99767 * 3 2 1 5 5 C 1.46503 * 119.99760 * 269.99450 * 4 3 2 6 6 C 1.50704 * 109.47145 * 270.00307 * 5 4 3 7 7 H 1.08003 * 119.99774 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99896 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00284 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00085 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47156 * 89.99766 * 10 8 6 12 12 H 1.48500 * 109.46812 * 209.99882 * 10 8 6 13 13 H 1.48500 * 109.46786 * 329.99669 * 10 8 6 14 14 C 1.34776 * 119.99797 * 90.00147 * 4 3 2 15 15 O 1.21517 * 119.99372 * 179.97438 * 14 4 3 16 16 O 1.34635 * 120.00603 * 359.97438 * 14 4 3 17 17 C 1.45189 * 117.00345 * 180.02562 * 16 14 4 18 18 C 1.50703 * 109.47280 * 179.97438 * 17 16 14 19 19 C 1.38255 * 119.99856 * 359.97438 * 18 17 16 20 20 C 1.38216 * 120.00028 * 179.97438 * 19 18 17 21 21 C 1.38258 * 120.00160 * 0.02877 * 20 19 18 22 22 C 1.38222 * 119.99551 * 359.76035 * 21 20 19 23 23 C 1.38213 * 120.00222 * 179.97438 * 18 17 16 24 24 C 1.50706 * 119.99863 * 359.97438 * 23 18 17 25 25 H 1.08010 * 119.99891 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00750 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99402 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47045 * 4.99586 * 3 2 1 29 29 H 1.09001 * 109.46576 * 244.99301 * 3 2 1 30 30 H 1.08994 * 109.47117 * 30.00788 * 5 4 3 31 31 H 1.09006 * 109.46898 * 150.00491 * 5 4 3 32 32 H 0.96994 * 120.00765 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.47409 * 59.99447 * 17 16 14 34 34 H 1.09003 * 109.47457 * 299.99822 * 17 16 14 35 35 H 1.08004 * 120.00139 * 0.02562 * 19 18 17 36 36 H 1.08002 * 119.99831 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.00273 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.99894 * 180.25363 * 22 21 20 39 39 H 1.09001 * 109.46953 * 89.99941 * 24 23 18 40 40 H 1.09000 * 109.47318 * 209.99539 * 24 23 18 41 41 H 1.09000 * 109.47161 * 330.00169 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5588 1.8650 2.4249 6 6 2.8443 3.3437 2.4803 7 1 3.3034 3.8370 1.6364 8 6 2.5194 4.0667 3.6085 9 7 1.9598 3.4660 4.6360 10 14 2.8726 5.8997 3.6770 11 1 1.6993 6.6496 3.1609 12 1 3.1373 6.3005 5.0822 13 1 4.0621 6.2060 2.8424 14 6 4.2496 0.8660 0.9825 15 8 5.0213 0.8886 1.9209 16 8 4.6493 0.3757 -0.2060 17 6 6.0150 -0.1092 -0.2935 18 6 6.2797 -0.6165 -1.6877 19 6 5.2806 -0.5681 -2.6421 20 6 5.5235 -1.0329 -3.9209 21 6 6.7653 -1.5468 -4.2455 22 6 7.7654 -1.5911 -3.2925 23 6 7.5211 -1.1301 -2.0122 24 6 8.6103 -1.1823 -0.9719 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4024 -0.9314 30 1 1.4887 1.6967 2.5459 31 1 3.0988 1.3603 3.2260 32 1 1.7309 3.9746 5.4295 33 1 6.1595 -0.9194 0.4212 34 1 6.7045 0.7037 -0.0653 35 1 4.3107 -0.1664 -2.3887 36 1 4.7429 -0.9955 -4.6664 37 1 6.9550 -1.9104 -5.2446 38 1 8.7367 -1.9887 -3.5471 39 1 8.5589 -2.1319 -0.4393 40 1 9.5817 -1.0906 -1.4579 41 1 8.4782 -0.3623 -0.2661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859166600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:37 Heat of formation + Delta-G solvation = -38.848983 kcal Electronic energy + Delta-G solvation = -22577.137888 eV Core-core repulsion = 19229.608788 eV Total energy + Delta-G solvation = -3347.529100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 4.21 seconds Orbital eigenvalues (eV) -40.08714 -39.26492 -36.58951 -35.36209 -33.20952 -33.15051 -32.14958 -31.61336 -27.89880 -27.25734 -26.20515 -25.31425 -23.21575 -21.97687 -20.84037 -20.10652 -19.42279 -17.34465 -16.88182 -16.58571 -15.95807 -15.89334 -15.31120 -15.01789 -14.61947 -14.47335 -14.21916 -13.66078 -13.51468 -13.15963 -13.03730 -12.74939 -12.42103 -12.27418 -12.21489 -12.00328 -11.61911 -11.31166 -11.10073 -11.05621 -10.91800 -10.87540 -10.62688 -10.38010 -10.20770 -9.70764 -9.60343 -9.12700 -8.85258 -8.65693 -8.45647 -7.81215 -6.06797 -4.11832 1.22202 1.31980 2.44056 2.91733 3.29797 3.36370 3.41321 3.61812 3.66832 4.39151 4.52385 4.71499 4.76611 4.89916 5.00323 5.15627 5.27629 5.29134 5.40798 5.42863 5.46010 5.49691 5.57067 5.62389 5.74463 5.77118 5.95301 6.05269 6.08358 6.25641 6.32070 6.42367 6.48459 6.72952 6.86478 6.91634 6.96478 7.11609 7.41489 7.47038 7.89187 8.17977 8.31632 8.87653 9.13491 9.53584 11.01300 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.003996 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.984062 B = 7005.264884 C = 7894.363348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.162 4.162 3 C 0.142 3.858 4 N -0.572 5.572 5 C 0.261 3.739 6 C -0.530 4.530 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.641 3.359 15 O -0.569 6.569 16 O -0.376 6.376 17 C 0.130 3.870 18 C -0.087 4.087 19 C -0.093 4.093 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.079 4.079 24 C -0.122 4.122 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.050 -10.435 -16.296 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.181 4.181 3 C 0.018 3.982 4 N -0.310 5.310 5 C 0.143 3.857 6 C -0.569 4.569 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.727 3.273 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.394 3.606 15 O -0.458 6.458 16 O -0.291 6.291 17 C 0.055 3.945 18 C -0.087 4.087 19 C -0.111 4.111 20 C -0.145 4.145 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.079 4.079 24 C -0.179 4.179 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.152 0.848 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.277 -10.396 -15.809 19.935 hybrid contribution 0.165 0.950 0.141 0.975 sum 6.442 -9.446 -15.668 19.397 Atomic orbital electron populations 1.23798 0.95799 1.01681 1.01143 1.23416 0.96246 0.99152 0.99322 1.20562 0.92805 0.95224 0.89601 1.47281 1.07431 1.61675 1.14578 1.19377 0.95528 0.93732 0.77042 1.21456 1.40847 0.93220 1.01409 0.92276 1.24918 0.94974 0.98856 0.95211 1.69929 1.41897 1.36236 1.05197 0.86474 0.78652 0.84817 0.77362 1.20575 1.21052 1.19870 1.18115 0.83943 0.77860 0.80651 1.90962 1.53161 1.61312 1.40318 1.86136 1.31755 1.75603 1.35576 1.21444 0.80462 0.98946 0.93692 1.19576 0.94033 1.00257 0.94844 1.21080 0.99558 0.98024 0.92411 1.21167 0.97162 0.99542 0.96624 1.21133 0.93594 0.99922 0.99218 1.20933 0.99366 1.01006 0.92682 1.19606 0.94174 0.98763 0.95392 1.20881 0.96486 1.02964 0.97538 0.88315 0.88846 0.87788 0.89389 0.90267 0.94150 0.93598 0.92629 0.90180 0.90031 0.84832 0.86036 0.86235 0.86030 0.90812 0.91333 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 14.32 29.02 0.42 -2.11 16 2 C -0.16 -2.47 9.85 -36.02 -0.35 -2.82 16 3 C 0.14 2.46 5.85 -5.19 -0.03 2.42 16 4 N -0.57 -12.57 2.44 -182.24 -0.44 -13.02 16 5 C 0.26 6.83 5.16 -5.19 -0.03 6.81 16 6 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 7 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 10 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.64 14.19 8.39 54.05 0.45 14.64 16 15 O -0.57 -14.57 15.71 -19.29 -0.30 -14.87 16 16 O -0.38 -6.72 7.51 -40.31 -0.30 -7.03 16 17 C 0.13 1.98 4.58 36.01 0.16 2.14 16 18 C -0.09 -1.15 5.88 -104.62 -0.62 -1.76 16 19 C -0.09 -1.17 9.38 -39.58 -0.37 -1.54 16 20 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 21 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 22 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 23 C -0.08 -0.90 5.88 -104.62 -0.62 -1.51 16 24 C -0.12 -1.15 9.60 36.01 0.35 -0.80 16 25 H 0.10 1.30 7.84 -52.48 -0.41 0.88 16 26 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.09 1.53 7.72 -51.93 -0.40 1.13 16 29 H 0.08 1.24 7.38 -51.93 -0.38 0.86 16 30 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 31 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.08 1.20 8.13 -51.93 -0.42 0.78 16 34 H 0.08 1.26 7.48 -51.93 -0.39 0.87 16 35 H 0.13 1.72 6.99 -52.48 -0.37 1.35 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 41 H 0.07 0.72 6.64 -51.93 -0.34 0.37 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -32.29 353.66 -8.26 -40.55 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.02 Total: 0.99 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.23 Total: -3.10 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.29 Total: -38.62 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.61 Total: -21.90 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.29 -8.26 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859166600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.703 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.21 seconds