Wall clock time and date at job start Tue Mar 31 2020 06:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00231 * 2 1 4 4 N 1.46500 * 109.46819 * 124.99767 * 3 2 1 5 5 C 1.46503 * 119.99760 * 269.99450 * 4 3 2 6 6 C 1.50704 * 109.47145 * 270.00307 * 5 4 3 7 7 H 1.08003 * 119.99774 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99896 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00284 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00085 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47156 * 89.99766 * 10 8 6 12 12 H 1.48500 * 109.46812 * 209.99882 * 10 8 6 13 13 H 1.48500 * 109.46786 * 329.99669 * 10 8 6 14 14 C 1.34776 * 119.99797 * 90.00147 * 4 3 2 15 15 O 1.21517 * 119.99372 * 179.97438 * 14 4 3 16 16 O 1.34635 * 120.00603 * 359.97438 * 14 4 3 17 17 C 1.45189 * 117.00345 * 180.02562 * 16 14 4 18 18 C 1.50703 * 109.47280 * 179.97438 * 17 16 14 19 19 C 1.38255 * 119.99856 * 359.97438 * 18 17 16 20 20 C 1.38216 * 120.00028 * 179.97438 * 19 18 17 21 21 C 1.38258 * 120.00160 * 0.02877 * 20 19 18 22 22 C 1.38222 * 119.99551 * 359.76035 * 21 20 19 23 23 C 1.38213 * 120.00222 * 179.97438 * 18 17 16 24 24 C 1.50706 * 119.99863 * 359.97438 * 23 18 17 25 25 H 1.08010 * 119.99891 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00750 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99402 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47045 * 4.99586 * 3 2 1 29 29 H 1.09001 * 109.46576 * 244.99301 * 3 2 1 30 30 H 1.08994 * 109.47117 * 30.00788 * 5 4 3 31 31 H 1.09006 * 109.46898 * 150.00491 * 5 4 3 32 32 H 0.96994 * 120.00765 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.47409 * 59.99447 * 17 16 14 34 34 H 1.09003 * 109.47457 * 299.99822 * 17 16 14 35 35 H 1.08004 * 120.00139 * 0.02562 * 19 18 17 36 36 H 1.08002 * 119.99831 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.00273 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.99894 * 180.25363 * 22 21 20 39 39 H 1.09001 * 109.46953 * 89.99941 * 24 23 18 40 40 H 1.09000 * 109.47318 * 209.99539 * 24 23 18 41 41 H 1.09000 * 109.47161 * 330.00169 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5588 1.8650 2.4249 6 6 2.8443 3.3437 2.4803 7 1 3.3034 3.8370 1.6364 8 6 2.5194 4.0667 3.6085 9 7 1.9598 3.4660 4.6360 10 14 2.8726 5.8997 3.6770 11 1 1.6993 6.6496 3.1609 12 1 3.1373 6.3005 5.0822 13 1 4.0621 6.2060 2.8424 14 6 4.2496 0.8660 0.9825 15 8 5.0213 0.8886 1.9209 16 8 4.6493 0.3757 -0.2060 17 6 6.0150 -0.1092 -0.2935 18 6 6.2797 -0.6165 -1.6877 19 6 5.2806 -0.5681 -2.6421 20 6 5.5235 -1.0329 -3.9209 21 6 6.7653 -1.5468 -4.2455 22 6 7.7654 -1.5911 -3.2925 23 6 7.5211 -1.1301 -2.0122 24 6 8.6103 -1.1823 -0.9719 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4024 -0.9314 30 1 1.4887 1.6967 2.5459 31 1 3.0988 1.3603 3.2260 32 1 1.7309 3.9746 5.4295 33 1 6.1595 -0.9194 0.4212 34 1 6.7045 0.7037 -0.0653 35 1 4.3107 -0.1664 -2.3887 36 1 4.7429 -0.9955 -4.6664 37 1 6.9550 -1.9104 -5.2446 38 1 8.7367 -1.9887 -3.5471 39 1 8.5589 -2.1319 -0.4393 40 1 9.5817 -1.0906 -1.4579 41 1 8.4782 -0.3623 -0.2661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859166600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:29 Heat of formation + Delta-G solvation = -55.770586 kcal Electronic energy + Delta-G solvation = -22577.871664 eV Core-core repulsion = 19229.608788 eV Total energy + Delta-G solvation = -3348.262876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 6.77 seconds Orbital eigenvalues (eV) -41.60090 -40.33712 -38.14252 -37.03762 -35.09435 -34.05906 -33.75940 -32.62529 -29.75713 -28.30007 -27.27881 -26.81176 -25.12765 -23.03096 -21.74023 -21.59990 -20.81403 -18.99435 -18.65428 -18.18448 -17.53608 -17.13951 -16.74851 -16.13423 -15.96406 -15.73214 -15.56802 -14.96658 -14.68255 -14.58833 -14.17146 -13.99822 -13.95740 -13.52941 -13.33197 -13.16662 -13.03565 -12.92205 -12.88266 -12.58825 -12.28691 -12.23922 -11.92291 -11.88835 -11.81976 -11.70614 -11.47151 -10.64780 -10.33979 -9.73027 -9.65244 -9.51745 -8.24038 -6.38702 0.35885 0.47559 1.06070 1.38092 1.40620 1.49918 1.53624 1.86064 2.38324 2.80698 3.03327 3.08159 3.67366 3.93709 4.00382 4.07667 4.16916 4.18665 4.21323 4.28304 4.44881 4.45327 4.64046 4.76663 4.78290 4.84629 4.87392 4.92735 5.04091 5.08466 5.12487 5.24523 5.32083 5.43477 5.58553 5.63219 5.69373 5.69782 5.72009 5.90963 6.00959 6.09775 6.53194 6.68755 7.25472 7.41990 8.83601 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.003996 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.984062 B = 7005.264884 C = 7894.363348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.183 4.183 3 C 0.141 3.859 4 N -0.576 5.576 5 C 0.279 3.721 6 C -0.549 4.549 7 H 0.053 0.947 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.968 3.032 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.275 1.275 14 C 0.641 3.359 15 O -0.612 6.612 16 O -0.360 6.360 17 C 0.129 3.871 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.130 4.130 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.086 4.086 24 C -0.123 4.123 25 H 0.104 0.896 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.005 0.995 32 H 0.269 0.731 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.254 -10.609 -18.703 22.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C 0.019 3.981 4 N -0.313 5.313 5 C 0.159 3.841 6 C -0.588 4.588 7 H 0.071 0.929 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.792 3.208 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.200 1.200 14 C 0.395 3.605 15 O -0.504 6.504 16 O -0.274 6.274 17 C 0.055 3.945 18 C -0.109 4.109 19 C -0.129 4.129 20 C -0.148 4.148 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.087 4.087 24 C -0.179 4.179 25 H 0.122 0.878 26 H 0.136 0.864 27 H 0.122 0.878 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.054 0.946 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.141 0.859 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.168 0.832 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.461 -10.589 -18.272 22.084 hybrid contribution 0.104 0.913 0.801 1.220 sum 6.565 -9.676 -17.470 21.022 Atomic orbital electron populations 1.24055 0.95137 1.03112 0.97830 1.23227 0.96826 0.97934 1.02279 1.20767 0.92340 0.96621 0.88380 1.47185 1.08301 1.61275 1.14563 1.18850 0.94427 0.92723 0.78072 1.21688 1.41229 0.94227 1.01635 0.92871 1.25803 0.94463 1.03730 0.94645 1.70036 1.42434 1.38170 1.05761 0.85407 0.78854 0.78993 0.77502 1.18701 1.20452 1.19966 1.18199 0.83645 0.77512 0.81153 1.90920 1.54431 1.63043 1.42045 1.86151 1.33406 1.74936 1.32921 1.21620 0.78642 0.98546 0.95742 1.19501 0.95522 1.02407 0.93513 1.21121 0.99089 0.99173 0.93546 1.21434 0.98413 0.98932 0.96025 1.21550 0.92816 0.98437 1.00546 1.21306 1.00769 1.00084 0.91826 1.19852 0.93686 0.98461 0.96656 1.20921 0.97033 1.02785 0.97157 0.87792 0.86415 0.87754 0.89541 0.88750 0.94605 0.97725 0.92211 0.90514 0.90873 0.85913 0.83928 0.83120 0.83210 0.90109 0.89186 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 14.32 67.78 0.97 -3.17 16 2 C -0.18 -5.50 9.85 25.65 0.25 -5.25 16 3 C 0.14 4.92 5.85 85.63 0.50 5.42 16 4 N -0.58 -26.25 2.44 -960.89 -2.34 -28.60 16 5 C 0.28 15.24 5.16 85.63 0.44 15.68 16 6 C -0.55 -31.87 9.39 25.60 0.24 -31.63 16 7 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 8 C 0.01 0.76 5.46 84.65 0.46 1.22 16 9 N -0.92 -55.40 13.29 21.45 0.28 -55.11 16 10 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 11 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 14 C 0.64 29.67 8.39 129.79 1.09 30.76 16 15 O -0.61 -33.14 15.71 19.79 0.31 -32.83 16 16 O -0.36 -13.41 7.51 -55.44 -0.42 -13.82 16 17 C 0.13 4.12 4.58 71.24 0.33 4.45 16 18 C -0.11 -2.89 5.88 -19.87 -0.12 -3.01 16 19 C -0.11 -2.76 9.38 22.27 0.21 -2.56 16 20 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 21 C -0.12 -1.87 10.05 22.27 0.22 -1.65 16 22 C -0.12 -2.09 9.70 22.27 0.22 -1.87 16 23 C -0.09 -1.86 5.88 -19.86 -0.12 -1.98 16 24 C -0.12 -2.20 9.60 71.24 0.68 -1.52 16 25 H 0.10 2.54 7.84 -2.91 -0.02 2.51 16 26 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 27 H 0.10 3.12 8.06 -2.91 -0.02 3.10 16 28 H 0.09 3.02 7.72 -2.39 -0.02 3.00 16 29 H 0.09 2.96 7.38 -2.39 -0.02 2.94 16 30 H 0.04 1.97 8.07 -2.39 -0.02 1.95 16 31 H 0.00 0.29 7.42 -2.38 -0.02 0.27 16 32 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16 34 H 0.07 2.42 7.48 -2.39 -0.02 2.40 16 35 H 0.12 3.20 6.99 -2.91 -0.02 3.18 16 36 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 37 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 38 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.20 8.08 -2.39 -0.02 1.18 16 41 H 0.06 1.19 6.64 -2.39 -0.02 1.17 16 Total: -1.00 -71.51 353.66 6.47 -65.04 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.00 Total: 15.86 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 5.61 Total: 2.63 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -2.06 Total: -83.71 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -0.11 Total: -46.65 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.51 6.47 -65.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859166600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.265 kcal (2) G-P(sol) polarization free energy of solvation -71.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.77 seconds