Wall clock time and date at job start Tue Mar 31 2020 06:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00127 * 2 1 4 4 C 1.50695 * 109.47666 * 179.97438 * 3 2 1 5 5 C 1.33016 * 120.00046 * 134.99522 * 4 3 2 6 6 C 1.47066 * 119.99873 * 179.72875 * 5 4 3 7 7 O 1.21627 * 119.99743 * 0.27501 * 6 5 4 8 8 N 1.34776 * 120.00117 * 180.27936 * 6 5 4 9 9 C 1.46504 * 119.99551 * 354.41079 * 8 6 5 10 10 C 1.50695 * 109.47276 * 90.00330 * 9 8 6 11 11 H 1.07999 * 120.00213 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00074 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00260 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00167 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46983 * 90.00001 * 14 12 10 16 16 H 1.48494 * 109.47477 * 209.99842 * 14 12 10 17 17 H 1.48497 * 109.47498 * 330.00336 * 14 12 10 18 18 C 1.39825 * 120.00041 * 174.40768 * 8 6 5 19 19 C 1.38895 * 120.07811 * 303.61756 * 18 8 6 20 20 C 1.38107 * 119.92953 * 179.72388 * 19 18 8 21 21 C 1.38284 * 120.06936 * 0.57146 * 20 19 18 22 22 C 1.50706 * 119.92393 * 179.70484 * 21 20 19 23 23 C 1.38284 * 120.14830 * 359.68155 * 21 20 19 24 24 C 1.38109 * 120.07371 * 0.04310 * 23 21 20 25 25 H 1.09000 * 109.47211 * 299.99801 * 1 2 3 26 26 H 1.09000 * 109.47483 * 59.99742 * 1 2 3 27 27 H 1.09002 * 109.46878 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46876 * 59.99550 * 3 2 1 29 29 H 1.09005 * 109.47024 * 300.00837 * 3 2 1 30 30 H 1.08000 * 119.99614 * 315.00115 * 4 3 2 31 31 H 1.08000 * 119.99810 * 0.02562 * 5 4 3 32 32 H 1.09008 * 109.46800 * 210.00107 * 9 8 6 33 33 H 1.08991 * 109.47528 * 329.99767 * 9 8 6 34 34 H 0.96990 * 120.00571 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.03300 * 359.97438 * 19 18 8 36 36 H 1.07998 * 119.96162 * 180.25692 * 20 19 18 37 37 H 1.09001 * 109.46800 * 269.97871 * 22 21 20 38 38 H 1.08992 * 109.47255 * 29.97499 * 22 21 20 39 39 H 1.09000 * 109.46842 * 149.97986 * 22 21 20 40 40 H 1.08005 * 119.96321 * 180.02562 * 23 21 20 41 41 H 1.07999 * 120.03546 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2401 1.9459 -0.8138 6 6 5.7065 1.8341 -0.8089 7 8 6.2536 1.0438 -0.0637 8 7 6.4441 2.6075 -1.6301 9 6 5.7836 3.4700 -2.6131 10 6 5.5141 4.8188 -1.9972 11 1 5.8053 5.0139 -0.9757 12 6 4.8959 5.8037 -2.7379 13 7 4.5418 5.5664 -3.9821 14 14 4.5612 7.4753 -1.9744 15 1 5.7219 8.3702 -2.2138 16 1 3.3456 8.0661 -2.5894 17 1 4.3503 7.3187 -0.5128 18 6 7.8395 2.5867 -1.5438 19 6 8.4667 2.8714 -0.3377 20 6 9.8450 2.8444 -0.2546 21 6 10.6009 2.5457 -1.3734 22 6 12.1049 2.5236 -1.2805 23 6 9.9798 2.2669 -2.5770 24 6 8.6017 2.2867 -2.6656 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.9983 0.4848 0.6623 31 1 3.7542 2.6479 -1.4753 32 1 6.4295 3.5903 -3.4829 33 1 4.8416 3.0160 -2.9201 34 1 4.1072 6.2593 -4.5033 35 1 7.8771 3.1098 0.5351 36 1 10.3331 3.0616 0.6840 37 1 12.4974 3.5156 -1.5046 38 1 12.4026 2.2344 -0.2727 39 1 12.5027 1.8051 -1.9973 40 1 10.5731 2.0336 -3.4489 41 1 8.1173 2.0684 -3.6058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865039924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:46 Heat of formation + Delta-G solvation = -39.495016 kcal Electronic energy + Delta-G solvation = -22376.517762 eV Core-core repulsion = 19028.960648 eV Total energy + Delta-G solvation = -3347.557115 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -39.93883 -38.27504 -37.78951 -35.26645 -33.47966 -32.76601 -31.36462 -30.52167 -27.92332 -27.49566 -26.19878 -25.11573 -23.32682 -22.03729 -21.96281 -20.10522 -18.36711 -17.10174 -16.76124 -16.38255 -16.09910 -15.60284 -15.05951 -15.00026 -14.82540 -14.46288 -14.07099 -13.66923 -13.47202 -13.09841 -12.99528 -12.65090 -12.40769 -12.30713 -12.06991 -11.78202 -11.65802 -11.41908 -11.25981 -11.10125 -11.00632 -10.77644 -10.67830 -10.22455 -9.90334 -9.86298 -9.32892 -9.02995 -8.64985 -8.62000 -8.47239 -7.42027 -6.24004 -4.31673 1.57832 1.86856 1.92613 3.19479 3.26649 3.29783 3.63206 3.77066 4.07774 4.24322 4.32375 5.03930 5.09422 5.19028 5.20117 5.22964 5.29317 5.35501 5.41906 5.43411 5.57813 5.58937 5.74243 5.76629 5.84073 5.85039 5.92873 6.09952 6.16253 6.45182 6.63034 6.64064 6.78639 6.84525 6.96234 6.97643 7.12114 7.14883 7.26752 7.64949 7.72688 7.96377 8.14460 8.71428 8.89200 9.35760 10.82566 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.009944 B = 0.005497 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.008078 B = 5092.666784 C = 7255.085279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.088 3.912 4 C -0.093 4.093 5 C -0.169 4.169 6 C 0.550 3.450 7 O -0.558 6.558 8 N -0.551 5.551 9 C 0.236 3.764 10 C -0.537 4.537 11 H 0.062 0.938 12 C 0.066 3.934 13 N -0.891 5.891 14 Si 0.897 3.103 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.175 3.825 19 C -0.108 4.108 20 C -0.110 4.110 21 C -0.111 4.111 22 C -0.106 4.106 23 C -0.109 4.109 24 C -0.126 4.126 25 H 0.040 0.960 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.128 0.872 31 H 0.144 0.856 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.266 0.734 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.119 0.881 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.309 -5.975 4.348 7.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.012 3.988 4 C -0.113 4.113 5 C -0.189 4.189 6 C 0.341 3.659 7 O -0.439 6.439 8 N -0.276 5.276 9 C 0.118 3.882 10 C -0.575 4.575 11 H 0.080 0.920 12 C -0.137 4.137 13 N -0.529 5.529 14 Si 0.725 3.275 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.197 1.197 18 C 0.082 3.918 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.112 4.112 22 C -0.163 4.163 23 C -0.128 4.128 24 C -0.146 4.146 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.137 0.863 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.560 -6.442 4.532 8.030 hybrid contribution -0.587 1.503 0.192 1.625 sum 0.973 -4.939 4.725 6.904 Atomic orbital electron populations 1.22741 0.81061 1.02637 1.00092 1.87910 1.19610 1.27741 1.95486 1.21557 0.91066 0.84840 1.01289 1.23219 0.93532 0.97484 0.97099 1.22869 0.93232 1.01766 1.01048 1.18514 0.87963 0.79827 0.79559 1.90726 1.73968 1.37804 1.41354 1.45853 1.03260 1.41402 1.37111 1.19644 0.93354 0.88494 0.86749 1.21441 1.39711 0.96829 0.99532 0.91966 1.24918 0.95149 0.98884 0.94734 1.69914 1.40432 1.34377 1.08175 0.86497 0.77928 0.83613 0.79507 1.20413 1.20993 1.19715 1.17601 0.83417 0.96916 0.93836 1.21091 0.94434 0.99675 0.97579 1.20772 0.93141 1.01036 0.97891 1.19773 0.95636 1.02014 0.93731 1.20699 0.91725 1.01820 1.02078 1.20751 0.93810 1.01224 0.97009 1.21102 0.93782 1.01198 0.98485 0.94114 0.93870 0.89700 0.91722 0.91780 0.85431 0.83793 0.94022 0.93760 0.92414 0.86354 0.86407 0.91654 0.92023 0.91995 0.86269 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.51 10.69 -35.23 -0.38 -5.89 16 3 C 0.09 1.23 6.36 36.00 0.23 1.46 16 4 C -0.09 -1.57 9.47 -36.12 -0.34 -1.91 16 5 C -0.17 -3.23 8.76 -37.82 -0.33 -3.56 16 6 C 0.55 12.01 7.40 -12.68 -0.09 11.91 16 7 O -0.56 -13.05 15.58 5.25 0.08 -12.97 16 8 N -0.55 -12.24 2.56 -116.07 -0.30 -12.54 16 9 C 0.24 5.64 4.68 -5.19 -0.02 5.61 16 10 C -0.54 -13.89 9.30 -34.44 -0.32 -14.21 16 11 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 12 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -24.12 13.29 55.43 0.74 -23.38 16 14 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 C 0.17 3.67 5.17 -83.72 -0.43 3.24 16 19 C -0.11 -2.13 8.93 -39.39 -0.35 -2.48 16 20 C -0.11 -1.82 9.69 -39.61 -0.38 -2.20 16 21 C -0.11 -1.70 5.88 -104.58 -0.62 -2.32 16 22 C -0.11 -1.21 10.01 36.01 0.36 -0.84 16 23 C -0.11 -1.75 9.69 -39.61 -0.38 -2.13 16 24 C -0.13 -2.36 9.31 -39.38 -0.37 -2.73 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.86 7.89 -51.93 -0.41 0.45 16 30 H 0.13 2.21 7.49 -52.49 -0.39 1.82 16 31 H 0.14 2.81 6.20 -52.49 -0.33 2.48 16 32 H 0.04 1.05 7.30 -51.92 -0.38 0.67 16 33 H 0.04 1.06 6.36 -51.93 -0.33 0.73 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.12 2.37 8.04 -52.49 -0.42 1.95 16 36 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 39 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 40 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.12 2.21 7.79 -52.49 -0.41 1.80 16 LS Contribution 354.28 15.07 5.34 5.34 Total: -1.00 -29.99 354.28 -7.59 -37.58 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.01 Total: 3.60 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.04 Total: -7.09 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.44 Total: -35.92 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.29 Total: -18.86 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.99 -7.59 -37.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865039924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.912 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds