Wall clock time and date at job start Tue Mar 31 2020 06:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00127 * 2 1 4 4 C 1.50695 * 109.47666 * 179.97438 * 3 2 1 5 5 C 1.33016 * 120.00046 * 134.99522 * 4 3 2 6 6 C 1.47066 * 119.99873 * 179.72875 * 5 4 3 7 7 O 1.21627 * 119.99743 * 0.27501 * 6 5 4 8 8 N 1.34776 * 120.00117 * 180.27936 * 6 5 4 9 9 C 1.46504 * 119.99551 * 354.41079 * 8 6 5 10 10 C 1.50695 * 109.47276 * 90.00330 * 9 8 6 11 11 H 1.07999 * 120.00213 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00074 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00260 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00167 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46983 * 90.00001 * 14 12 10 16 16 H 1.48494 * 109.47477 * 209.99842 * 14 12 10 17 17 H 1.48497 * 109.47498 * 330.00336 * 14 12 10 18 18 C 1.39825 * 120.00041 * 174.40768 * 8 6 5 19 19 C 1.38895 * 120.07811 * 303.61756 * 18 8 6 20 20 C 1.38107 * 119.92953 * 179.72388 * 19 18 8 21 21 C 1.38284 * 120.06936 * 0.57146 * 20 19 18 22 22 C 1.50706 * 119.92393 * 179.70484 * 21 20 19 23 23 C 1.38284 * 120.14830 * 359.68155 * 21 20 19 24 24 C 1.38109 * 120.07371 * 0.04310 * 23 21 20 25 25 H 1.09000 * 109.47211 * 299.99801 * 1 2 3 26 26 H 1.09000 * 109.47483 * 59.99742 * 1 2 3 27 27 H 1.09002 * 109.46878 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46876 * 59.99550 * 3 2 1 29 29 H 1.09005 * 109.47024 * 300.00837 * 3 2 1 30 30 H 1.08000 * 119.99614 * 315.00115 * 4 3 2 31 31 H 1.08000 * 119.99810 * 0.02562 * 5 4 3 32 32 H 1.09008 * 109.46800 * 210.00107 * 9 8 6 33 33 H 1.08991 * 109.47528 * 329.99767 * 9 8 6 34 34 H 0.96990 * 120.00571 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.03300 * 359.97438 * 19 18 8 36 36 H 1.07998 * 119.96162 * 180.25692 * 20 19 18 37 37 H 1.09001 * 109.46800 * 269.97871 * 22 21 20 38 38 H 1.08992 * 109.47255 * 29.97499 * 22 21 20 39 39 H 1.09000 * 109.46842 * 149.97986 * 22 21 20 40 40 H 1.08005 * 119.96321 * 180.02562 * 23 21 20 41 41 H 1.07999 * 120.03546 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2401 1.9459 -0.8138 6 6 5.7065 1.8341 -0.8089 7 8 6.2536 1.0438 -0.0637 8 7 6.4441 2.6075 -1.6301 9 6 5.7836 3.4700 -2.6131 10 6 5.5141 4.8188 -1.9972 11 1 5.8053 5.0139 -0.9757 12 6 4.8959 5.8037 -2.7379 13 7 4.5418 5.5664 -3.9821 14 14 4.5612 7.4753 -1.9744 15 1 5.7219 8.3702 -2.2138 16 1 3.3456 8.0661 -2.5894 17 1 4.3503 7.3187 -0.5128 18 6 7.8395 2.5867 -1.5438 19 6 8.4667 2.8714 -0.3377 20 6 9.8450 2.8444 -0.2546 21 6 10.6009 2.5457 -1.3734 22 6 12.1049 2.5236 -1.2805 23 6 9.9798 2.2669 -2.5770 24 6 8.6017 2.2867 -2.6656 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.9983 0.4848 0.6623 31 1 3.7542 2.6479 -1.4753 32 1 6.4295 3.5903 -3.4829 33 1 4.8416 3.0160 -2.9201 34 1 4.1072 6.2593 -4.5033 35 1 7.8771 3.1098 0.5351 36 1 10.3331 3.0616 0.6840 37 1 12.4974 3.5156 -1.5046 38 1 12.4026 2.2344 -0.2727 39 1 12.5027 1.8051 -1.9973 40 1 10.5731 2.0336 -3.4489 41 1 8.1173 2.0684 -3.6058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865039924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:45 Heat of formation + Delta-G solvation = -55.787105 kcal Electronic energy + Delta-G solvation = -22377.224240 eV Core-core repulsion = 19028.960648 eV Total energy + Delta-G solvation = -3348.263593 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.52744 -39.67606 -38.89662 -36.95912 -34.97742 -34.57492 -32.73112 -31.89785 -29.38006 -29.02532 -27.34581 -26.26305 -25.15753 -23.50617 -23.32681 -21.48616 -19.90298 -18.69804 -18.62668 -18.02055 -17.21168 -16.80431 -16.51504 -16.45865 -16.18483 -15.94724 -15.48367 -15.22582 -14.56422 -14.48888 -14.37234 -14.34348 -13.93819 -13.47268 -13.35084 -13.14488 -12.97875 -12.82448 -12.75181 -12.57058 -12.47866 -12.22739 -12.10920 -11.99024 -11.76453 -11.05104 -10.94254 -10.64091 -10.39418 -10.21100 -9.86247 -8.97900 -8.23714 -6.39665 0.11239 0.47706 0.51295 1.39108 1.41072 1.50853 2.10384 2.20390 2.39704 2.81642 2.94320 3.05779 3.71117 3.94551 4.03404 4.05559 4.09126 4.21445 4.36427 4.45911 4.48909 4.50552 4.55860 4.57253 4.60964 4.83691 4.86449 4.89872 4.93122 5.04891 5.14173 5.20016 5.22882 5.36055 5.41201 5.54503 5.65678 5.68213 5.80606 5.97885 6.14884 6.16925 6.40220 6.71093 7.17194 7.32587 8.81381 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.009944 B = 0.005497 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.008078 B = 5092.666784 C = 7255.085279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.090 3.910 4 C -0.061 4.061 5 C -0.197 4.197 6 C 0.543 3.457 7 O -0.583 6.583 8 N -0.554 5.554 9 C 0.253 3.747 10 C -0.545 4.545 11 H 0.049 0.951 12 C 0.026 3.974 13 N -0.917 5.917 14 Si 0.957 3.043 15 H -0.277 1.277 16 H -0.275 1.275 17 H -0.270 1.270 18 C 0.131 3.869 19 C -0.130 4.130 20 C -0.111 4.111 21 C -0.103 4.103 22 C -0.104 4.104 23 C -0.107 4.107 24 C -0.143 4.143 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.137 0.863 32 H 0.024 0.976 33 H 0.038 0.962 34 H 0.270 0.730 35 H 0.101 0.899 36 H 0.147 0.853 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.153 0.847 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 -5.648 4.959 7.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.015 3.985 4 C -0.081 4.081 5 C -0.217 4.217 6 C 0.336 3.664 7 O -0.466 6.466 8 N -0.278 5.278 9 C 0.133 3.867 10 C -0.584 4.584 11 H 0.067 0.933 12 C -0.175 4.175 13 N -0.556 5.556 14 Si 0.782 3.218 15 H -0.202 1.202 16 H -0.200 1.200 17 H -0.195 1.195 18 C 0.039 3.961 19 C -0.150 4.150 20 C -0.129 4.129 21 C -0.103 4.103 22 C -0.160 4.160 23 C -0.125 4.125 24 C -0.163 4.163 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.155 0.845 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.165 0.835 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.171 0.829 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.297 -6.118 5.141 8.315 hybrid contribution -0.775 1.313 0.032 1.525 sum 1.522 -4.805 5.173 7.223 Atomic orbital electron populations 1.22997 0.78769 1.04173 1.01254 1.87866 1.22087 1.27521 1.95730 1.21562 0.88814 0.85408 1.02752 1.23447 0.95405 0.94840 0.94408 1.22659 0.91892 1.03934 1.03241 1.18948 0.89027 0.79321 0.79107 1.90680 1.74654 1.38873 1.42424 1.45786 1.04165 1.41109 1.36756 1.19281 0.92661 0.88234 0.86490 1.21540 1.39917 0.97909 0.99015 0.93277 1.25614 0.94781 1.02034 0.95081 1.69998 1.40919 1.35533 1.09169 0.85561 0.77978 0.79472 0.78750 1.20250 1.19961 1.19483 1.17998 0.83023 0.99678 0.95366 1.21142 0.96001 1.01201 0.96636 1.21141 0.91865 1.00089 0.99812 1.20309 0.98073 0.99284 0.92638 1.20786 0.88163 1.03297 1.03772 1.21177 0.92748 0.99851 0.98726 1.21270 0.95261 1.01976 0.97743 0.92464 0.93157 0.88090 0.89177 0.91196 0.86026 0.84483 0.95826 0.94421 0.92081 0.88074 0.83540 0.90191 0.90466 0.90147 0.82894 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -11.14 10.69 -148.98 -1.59 -12.74 16 3 C 0.09 2.42 6.36 71.23 0.45 2.87 16 4 C -0.06 -2.07 9.47 24.52 0.23 -1.84 16 5 C -0.20 -7.86 8.76 23.42 0.21 -7.65 16 6 C 0.54 25.05 7.40 86.56 0.64 25.69 16 7 O -0.58 -28.66 15.58 -4.12 -0.06 -28.72 16 8 N -0.55 -26.05 2.56 -639.38 -1.64 -27.69 16 9 C 0.25 12.73 4.68 85.63 0.40 13.13 16 10 C -0.55 -29.19 9.30 25.60 0.24 -28.95 16 11 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 12 C 0.03 1.36 5.46 84.65 0.46 1.82 16 13 N -0.92 -50.35 13.29 21.45 0.28 -50.06 16 14 Si 0.96 41.87 29.54 68.60 2.03 43.89 16 15 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 C 0.13 5.76 5.17 38.18 0.20 5.95 16 19 C -0.13 -5.30 8.93 22.40 0.20 -5.10 16 20 C -0.11 -3.56 9.69 22.25 0.22 -3.34 16 21 C -0.10 -2.91 5.88 -19.84 -0.12 -3.02 16 22 C -0.10 -1.93 10.01 71.24 0.71 -1.21 16 23 C -0.11 -3.27 9.69 22.25 0.22 -3.05 16 24 C -0.14 -5.50 9.31 22.40 0.21 -5.29 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 1.81 7.89 -2.38 -0.02 1.79 16 30 H 0.12 4.29 7.49 -2.91 -0.02 4.27 16 31 H 0.14 5.63 6.20 -2.91 -0.02 5.61 16 32 H 0.02 1.26 7.30 -2.38 -0.02 1.24 16 33 H 0.04 1.92 6.36 -2.39 -0.02 1.91 16 34 H 0.27 13.95 8.31 -92.72 -0.77 13.18 16 35 H 0.10 4.33 8.04 -2.91 -0.02 4.30 16 36 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 39 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 40 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.12 4.52 7.79 -2.91 -0.02 4.50 16 Total: -1.00 -66.62 354.28 5.54 -61.08 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 1.01 Total: 22.55 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 5.51 Total: -8.31 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -1.35 Total: -77.75 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -1.66 Total: -41.46 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -66.62 5.54 -61.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865039924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.291 kcal (2) G-P(sol) polarization free energy of solvation -66.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds