Wall clock time and date at job start Tue Mar 31 2020 06:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99527 * 2 1 4 4 C 1.50698 * 109.46763 * 180.02562 * 3 2 1 5 5 C 1.33021 * 120.00094 * 137.41260 * 4 3 2 6 6 C 1.47069 * 119.99785 * 11.51189 * 5 4 3 7 7 O 1.21629 * 119.99577 * 11.91229 * 6 5 4 8 8 N 1.34767 * 119.99983 * 191.91103 * 6 5 4 9 9 C 1.46497 * 120.00381 * 5.73170 * 8 6 5 10 10 C 1.50704 * 109.47374 * 270.00457 * 9 8 6 11 11 H 1.08000 * 119.99884 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00330 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00602 * 179.97438 * 12 10 9 14 14 Si 1.86808 * 119.99810 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47190 * 90.00102 * 14 12 10 16 16 H 1.48494 * 109.47070 * 210.00112 * 14 12 10 17 17 H 1.48500 * 109.47152 * 330.00069 * 14 12 10 18 18 C 1.39837 * 119.99826 * 185.73457 * 8 6 5 19 19 C 1.38897 * 120.07154 * 57.23676 * 18 8 6 20 20 C 1.38106 * 119.92468 * 179.97438 * 19 18 8 21 21 C 1.38289 * 120.07182 * 0.25480 * 20 19 18 22 22 C 1.50704 * 119.92705 * 179.72412 * 21 20 19 23 23 C 1.38278 * 120.14789 * 359.48648 * 21 20 19 24 24 C 1.38116 * 120.07191 * 0.51375 * 23 21 20 25 25 H 1.09004 * 109.46596 * 299.99211 * 1 2 3 26 26 H 1.08995 * 109.47471 * 59.99571 * 1 2 3 27 27 H 1.08999 * 109.46811 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47045 * 60.00950 * 3 2 1 29 29 H 1.08995 * 109.47588 * 300.00586 * 3 2 1 30 30 H 1.08000 * 120.00711 * 317.41340 * 4 3 2 31 31 H 1.08000 * 120.00275 * 191.51322 * 5 4 3 32 32 H 1.09003 * 109.46893 * 30.00112 * 9 8 6 33 33 H 1.09002 * 109.47423 * 149.99896 * 9 8 6 34 34 H 0.96993 * 120.00494 * 180.02562 * 13 12 10 35 35 H 1.07996 * 120.03563 * 359.95398 * 19 18 8 36 36 H 1.07995 * 119.96543 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.47084 * 89.99778 * 22 21 20 38 38 H 1.08993 * 109.46941 * 209.99674 * 22 21 20 39 39 H 1.09005 * 109.47047 * 330.00051 * 22 21 20 40 40 H 1.08001 * 119.96713 * 180.25815 * 23 21 20 41 41 H 1.07994 * 120.03590 * 179.76801 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2422 1.9797 -0.7804 6 6 3.6178 3.1329 -1.4460 7 8 2.5018 3.4916 -1.1213 8 7 4.2821 3.7923 -2.4155 9 6 5.5712 3.2870 -2.8942 10 6 6.6827 3.8880 -2.0729 11 1 6.4520 4.5778 -1.2745 12 6 7.9941 3.5573 -2.3407 13 7 8.9642 4.0822 -1.6244 14 14 8.3932 2.3637 -3.7211 15 1 8.5849 3.1166 -4.9866 16 1 9.6381 1.6243 -3.3917 17 1 7.2738 1.4013 -3.8824 18 6 3.7410 4.9590 -2.9647 19 6 3.4324 6.0363 -2.1441 20 6 2.8986 7.1872 -2.6898 21 6 2.6664 7.2658 -4.0508 22 6 2.0780 8.5210 -4.6419 23 6 2.9775 6.1970 -4.8712 24 6 3.5116 5.0431 -4.3320 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8901 29 1 1.6885 1.8465 -0.8899 30 1 3.9968 0.4574 0.6319 31 1 5.2931 1.7767 -0.9247 32 1 5.5943 2.2015 -2.7977 33 1 5.7033 3.5617 -3.9407 34 1 9.8868 3.8498 -1.8130 35 1 3.6094 5.9739 -1.0806 36 1 2.6580 8.0251 -2.0524 37 1 2.8817 9.2012 -4.9239 38 1 1.4911 8.2665 -5.5243 39 1 1.4357 9.0032 -3.9049 40 1 2.7988 6.2631 -5.9343 41 1 3.7508 4.2074 -4.9727 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865039925.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:51 Heat of formation + Delta-G solvation = -26.311773 kcal Electronic energy + Delta-G solvation = -22764.082982 eV Core-core repulsion = 19417.097536 eV Total energy + Delta-G solvation = -3346.985446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15678 -38.51800 -37.54333 -35.47516 -33.38808 -32.67110 -31.49959 -30.60300 -28.17697 -27.74359 -26.24195 -24.95647 -23.09728 -22.31873 -21.92319 -20.35516 -18.19640 -17.23483 -17.09926 -16.47710 -15.90574 -15.69708 -15.19347 -15.07848 -14.70674 -14.29428 -13.96359 -13.69398 -13.53794 -13.18588 -13.10475 -12.87259 -12.51579 -12.29128 -12.08965 -12.00613 -11.68954 -11.53682 -11.38839 -11.29331 -11.08285 -10.78716 -10.66079 -10.36157 -9.80529 -9.70932 -9.10417 -9.03978 -8.77401 -8.66258 -8.54757 -7.48732 -6.25861 -4.28509 1.51281 1.78993 1.83874 3.14990 3.21955 3.24003 3.57401 3.66029 4.06929 4.16635 4.22264 5.03694 5.11462 5.13653 5.17425 5.22783 5.34662 5.36193 5.47524 5.52655 5.63291 5.67375 5.70322 5.76125 5.78712 5.85083 6.02070 6.04207 6.13977 6.35698 6.44073 6.50008 6.63988 6.66572 6.68929 6.90544 6.92156 7.11302 7.28873 7.35308 7.54001 7.92916 8.30570 8.69849 8.80913 9.31696 10.86576 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.008332 B = 0.007151 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3359.550893 B = 3914.504497 C = 6571.063721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.399 6.399 3 C 0.071 3.929 4 C -0.083 4.083 5 C -0.181 4.181 6 C 0.549 3.451 7 O -0.551 6.551 8 N -0.545 5.545 9 C 0.208 3.792 10 C -0.542 4.542 11 H 0.080 0.920 12 C 0.079 3.921 13 N -0.887 5.887 14 Si 0.869 3.131 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.171 3.829 19 C -0.102 4.102 20 C -0.108 4.108 21 C -0.108 4.108 22 C -0.107 4.107 23 C -0.110 4.110 24 C -0.128 4.128 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.130 0.870 31 H 0.151 0.849 32 H 0.041 0.959 33 H 0.034 0.966 34 H 0.267 0.733 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.120 0.880 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 -0.547 -2.772 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.318 6.318 3 C -0.004 4.004 4 C -0.103 4.103 5 C -0.201 4.201 6 C 0.342 3.658 7 O -0.433 6.433 8 N -0.270 5.270 9 C 0.088 3.912 10 C -0.580 4.580 11 H 0.098 0.902 12 C -0.125 4.125 13 N -0.524 5.524 14 Si 0.695 3.305 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.187 1.187 18 C 0.079 3.921 19 C -0.122 4.122 20 C -0.127 4.127 21 C -0.108 4.108 22 C -0.164 4.164 23 C -0.129 4.129 24 C -0.148 4.148 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.148 0.852 31 H 0.169 0.831 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.138 0.862 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.319 -0.556 -2.583 13.579 hybrid contribution 0.622 -0.373 -0.594 0.937 sum -12.698 -0.929 -3.177 13.122 Atomic orbital electron populations 1.22658 0.81244 1.02131 1.00030 1.87800 1.19499 1.28922 1.95625 1.22135 0.91249 0.83708 1.03327 1.23326 0.94293 0.97743 0.94922 1.22942 1.02627 0.96095 0.98436 1.18669 0.84385 0.84037 0.78746 1.90645 1.19169 1.68628 1.64888 1.45530 1.21728 1.23190 1.36544 1.20012 0.79766 0.95466 0.95969 1.21300 0.89463 1.28821 1.18424 0.90215 1.24839 0.96020 0.95693 0.95964 1.69876 0.99930 1.43123 1.39517 0.86961 0.78779 0.81830 0.82932 1.19797 1.20688 1.18729 1.17577 0.95837 0.86782 0.91911 1.21114 0.99141 0.91915 1.00034 1.20802 1.00054 0.97440 0.94412 1.19790 1.01143 0.96164 0.93722 1.20710 1.00182 0.94959 1.00559 1.20739 1.00165 0.92886 0.99067 1.21069 1.00808 0.98711 0.94236 0.94287 0.94124 0.89991 0.92125 0.88860 0.85246 0.83100 0.94098 0.94778 0.92246 0.86148 0.86271 0.91553 0.91985 0.91945 0.86248 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 11.01 101.05 1.11 1.53 16 2 O -0.40 -6.07 10.69 -35.23 -0.38 -6.45 16 3 C 0.07 1.13 5.25 36.00 0.19 1.32 16 4 C -0.08 -1.34 9.95 -36.12 -0.36 -1.70 16 5 C -0.18 -3.33 8.96 -37.81 -0.34 -3.67 16 6 C 0.55 11.28 7.11 -12.68 -0.09 11.19 16 7 O -0.55 -11.70 12.84 5.25 0.07 -11.63 16 8 N -0.55 -11.53 2.56 -116.07 -0.30 -11.83 16 9 C 0.21 4.62 3.74 -5.19 -0.02 4.61 16 10 C -0.54 -14.22 9.66 -34.44 -0.33 -14.55 16 11 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 12 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 13 N -0.89 -25.57 13.96 55.43 0.77 -24.80 16 14 Si 0.87 19.58 27.47 -169.99 -4.67 14.91 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 18 C 0.17 3.43 5.14 -83.72 -0.43 3.00 16 19 C -0.10 -1.96 8.98 -39.39 -0.35 -2.31 16 20 C -0.11 -1.74 9.69 -39.61 -0.38 -2.12 16 21 C -0.11 -1.58 5.88 -104.59 -0.62 -2.19 16 22 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 23 C -0.11 -1.66 9.69 -39.61 -0.38 -2.05 16 24 C -0.13 -2.26 9.32 -39.38 -0.37 -2.63 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.09 1.68 5.33 -51.93 -0.28 1.40 16 30 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.15 2.85 6.48 -52.49 -0.34 2.51 16 32 H 0.04 0.87 5.62 -51.93 -0.29 0.58 16 33 H 0.03 0.75 6.81 -51.93 -0.35 0.39 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 36 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.58 8.08 -51.93 -0.42 0.17 16 39 H 0.06 0.60 8.08 -51.93 -0.42 0.19 16 40 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.12 1.98 7.85 -52.49 -0.41 1.57 16 LS Contribution 345.69 15.07 5.21 5.21 Total: -1.00 -30.21 345.69 -7.31 -37.53 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.91 Total: 5.42 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.11 Total: -8.37 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.48 Total: -36.63 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.31 Total: -18.07 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.67 Total: 14.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.21 -7.31 -37.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865039925.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.214 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds