Wall clock time and date at job start Tue Mar 31 2020 06:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38014 * 120.00328 * 2 1 4 4 C 1.38204 * 120.23402 * 180.02562 * 3 2 1 5 5 C 1.39024 * 120.23383 * 0.25123 * 4 3 2 6 6 N 1.39713 * 120.00438 * 179.72373 * 5 4 3 7 7 C 1.38633 * 119.99611 * 359.45056 * 5 4 3 8 8 C 1.50701 * 120.11819 * 180.27103 * 7 5 4 9 9 C 1.39545 * 119.76355 * 0.56683 * 7 5 4 10 10 C 1.47741 * 120.11132 * 179.68179 * 9 7 5 11 11 O 1.21473 * 120.00068 * 270.02507 * 10 9 7 12 12 O 1.34710 * 120.00058 * 90.02460 * 10 9 7 13 13 C 1.45206 * 117.00148 * 179.97438 * 12 10 9 14 14 C 1.52991 * 109.47112 * 179.97438 * 13 12 10 15 15 C 1.50702 * 115.55205 * 65.10545 * 14 13 12 16 16 H 1.07994 * 120.00274 * 266.11431 * 15 14 13 17 17 C 1.37877 * 120.00022 * 86.11141 * 15 14 13 18 18 N 1.31518 * 119.99736 * 353.70475 * 17 15 14 19 19 Si 1.86797 * 120.00122 * 173.70993 * 17 15 14 20 20 H 1.48500 * 109.47199 * 60.00047 * 19 17 15 21 21 H 1.48502 * 109.47006 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47033 * 299.99562 * 19 17 15 23 23 C 1.52999 * 117.50236 * 279.43673 * 14 13 12 24 24 C 1.53002 * 117.49927 * 210.77519 * 14 13 12 25 25 H 1.08995 * 109.47434 * 89.99819 * 1 2 3 26 26 H 1.09004 * 109.46984 * 210.00524 * 1 2 3 27 27 H 1.09002 * 109.47126 * 329.99551 * 1 2 3 28 28 H 1.08005 * 119.87570 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.88393 * 179.97438 * 4 3 2 30 30 H 0.96998 * 119.99806 * 359.97438 * 6 5 4 31 31 H 0.97003 * 120.00009 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.47081 * 270.30207 * 8 7 5 33 33 H 1.09002 * 109.46803 * 30.29713 * 8 7 5 34 34 H 1.08998 * 109.46832 * 150.29477 * 8 7 5 35 35 H 1.08997 * 109.46949 * 300.00057 * 13 12 10 36 36 H 1.09005 * 109.46949 * 59.99629 * 13 12 10 37 37 H 0.97003 * 119.99926 * 179.97438 * 18 17 15 38 38 H 1.09003 * 117.49620 * 359.97438 * 23 14 13 39 39 H 1.08993 * 117.50306 * 145.02110 * 23 14 13 40 40 H 1.09001 * 117.49741 * 214.97738 * 24 14 13 41 41 H 1.08997 * 117.50002 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1952 0.0000 4 6 3.5791 1.2008 -0.0005 5 6 4.2840 0.0025 -0.0063 6 7 5.6811 0.0137 -0.0127 7 6 3.6006 -1.2037 -0.0001 8 6 4.3619 -2.5042 -0.0002 9 6 2.2051 -1.2092 0.0000 10 6 1.4690 -2.4902 -0.0005 11 8 1.1667 -3.0165 -1.0526 12 8 1.1330 -3.0744 1.1659 13 6 0.4101 -4.3313 1.0895 14 6 0.1189 -4.8390 2.5030 15 6 -0.8101 -3.9814 3.3232 16 1 -0.4071 -3.2327 3.9890 17 6 -2.1745 -4.1527 3.2235 18 7 -2.6700 -4.9754 2.3249 19 14 -3.3193 -3.2162 4.3644 20 1 -3.1259 -1.7567 4.1710 21 1 -4.7272 -3.5737 4.0556 22 1 -3.0150 -3.5735 5.7733 23 6 1.2475 -5.5627 3.2402 24 6 0.0491 -6.3534 2.7094 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6551 2.1294 0.0004 29 1 4.1135 2.1393 -0.0009 30 1 6.1593 0.8576 -0.0134 31 1 6.1728 -0.8224 -0.0171 32 1 4.5454 -2.8177 -1.0279 33 1 5.3135 -2.3681 0.5136 34 1 3.7774 -3.2674 0.5137 35 1 -0.5288 -4.1786 0.5573 36 1 1.0141 -5.0661 0.5571 37 1 -3.6300 -5.0962 2.2549 38 1 2.1973 -5.6775 2.7179 39 1 1.3178 -5.4189 4.3184 40 1 -0.6685 -6.7294 3.4387 41 1 0.2102 -6.9880 1.8380 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873482583.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:19 Heat of formation + Delta-G solvation = -45.452030 kcal Electronic energy + Delta-G solvation = -23151.669928 eV Core-core repulsion = 19803.854498 eV Total energy + Delta-G solvation = -3347.815430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.33584 -38.89806 -36.72451 -35.23230 -35.08444 -32.65547 -31.94035 -30.76379 -27.89579 -26.70867 -25.66711 -25.23931 -23.44889 -21.18195 -20.55814 -20.16805 -19.24550 -17.55897 -17.39969 -16.68862 -15.99166 -15.48844 -15.14930 -14.70039 -14.58131 -14.20111 -14.07541 -13.74856 -13.35666 -13.05521 -12.98434 -12.57825 -12.16289 -12.10742 -12.03606 -11.83328 -11.63623 -11.33416 -11.11141 -10.95425 -10.84155 -10.55247 -10.34872 -10.27459 -10.01038 -9.83875 -9.54289 -8.81856 -8.71985 -8.44665 -8.19917 -7.43513 -6.05195 -4.10264 1.21337 1.56762 2.67818 3.29774 3.32720 3.36505 3.39501 3.74557 3.86414 4.40855 4.79978 4.88142 4.98920 5.13666 5.24706 5.36633 5.43288 5.54929 5.60418 5.64430 5.72518 5.85395 5.92795 5.98479 6.13716 6.23504 6.25136 6.32180 6.34359 6.41865 6.52781 6.62557 6.69636 6.73808 6.83098 7.03799 7.21992 7.36861 7.37498 7.47465 7.63605 7.88323 8.35536 8.44622 8.91403 9.55429 11.04166 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017939 B = 0.004924 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.470393 B = 5685.089588 C = 6453.695729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.094 4.094 3 C -0.079 4.079 4 C -0.176 4.176 5 C 0.207 3.793 6 N -0.879 5.879 7 C -0.122 4.122 8 C -0.113 4.113 9 C -0.049 4.049 10 C 0.507 3.493 11 O -0.512 6.512 12 O -0.328 6.328 13 C 0.113 3.887 14 C 0.038 3.962 15 C -0.489 4.489 16 H 0.063 0.937 17 C 0.070 3.930 18 N -0.882 5.882 19 Si 0.891 3.109 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.205 4.205 24 C -0.144 4.144 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.397 0.603 31 H 0.397 0.603 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.427 9.943 -4.660 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.096 4.096 3 C -0.097 4.097 4 C -0.199 4.199 5 C 0.103 3.897 6 N -0.420 5.420 7 C -0.126 4.126 8 C -0.170 4.170 9 C -0.050 4.050 10 C 0.350 3.650 11 O -0.402 6.402 12 O -0.243 6.243 13 C 0.040 3.960 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.081 0.919 17 C -0.134 4.134 18 N -0.518 5.518 19 Si 0.719 3.281 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.243 4.243 24 C -0.181 4.181 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.225 0.775 31 H 0.227 0.773 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.074 9.648 -5.010 17.004 hybrid contribution -0.393 0.348 0.429 0.678 sum 12.681 9.996 -4.581 16.784 Atomic orbital electron populations 1.20832 0.90564 1.03750 1.02441 1.19646 0.96275 0.91236 1.02473 1.20638 0.93270 0.97060 0.98775 1.20624 0.94311 0.96011 1.08963 1.17303 0.84122 0.92743 0.95526 1.42449 1.02926 1.10760 1.85868 1.19188 0.91713 0.94363 1.07366 1.20689 0.99687 0.94263 1.02325 1.18764 0.92236 0.90963 1.03077 1.21194 0.76338 0.84461 0.82990 1.90812 1.52074 1.64047 1.33280 1.86713 1.67207 1.38583 1.31758 1.22959 0.93988 0.79502 0.99557 1.18765 0.95544 0.91527 0.90425 1.20343 0.89672 1.18922 1.23713 0.91912 1.25001 0.98105 0.95119 0.95128 1.69994 1.12657 1.36349 1.32817 0.86666 0.79631 0.80428 0.81387 1.20075 1.21281 1.20141 1.23010 0.92444 1.08994 0.99814 1.22534 0.99240 0.94962 1.01396 0.91177 0.90793 0.91078 0.85407 0.85935 0.77536 0.77298 0.91101 0.91573 0.91035 0.90535 0.94308 0.92864 0.91605 0.90054 0.89391 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 9.61 36.00 0.35 -1.52 16 2 C -0.09 -1.49 5.92 -104.19 -0.62 -2.11 16 3 C -0.08 -1.00 9.68 -39.68 -0.38 -1.38 16 4 C -0.18 -2.03 9.89 -39.30 -0.39 -2.41 16 5 C 0.21 2.53 6.73 -83.83 -0.56 1.97 16 6 N -0.88 -7.43 8.99 32.39 0.29 -7.13 16 7 C -0.12 -1.82 5.93 -103.99 -0.62 -2.44 16 8 C -0.11 -1.49 9.17 36.01 0.33 -1.16 16 9 C -0.05 -0.86 5.75 -105.01 -0.60 -1.47 16 10 C 0.51 10.62 4.31 34.61 0.15 10.77 16 11 O -0.51 -11.73 16.90 -19.25 -0.33 -12.06 16 12 O -0.33 -7.53 10.17 -40.52 -0.41 -7.94 16 13 C 0.11 2.74 5.29 37.15 0.20 2.93 16 14 C 0.04 0.95 1.62 -155.66 -0.25 0.70 16 15 C -0.49 -13.39 8.77 -34.44 -0.30 -13.69 16 16 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 17 C 0.07 1.90 5.38 -17.82 -0.10 1.81 16 18 N -0.88 -24.84 12.88 55.43 0.71 -24.13 16 19 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.21 -4.51 9.96 -26.69 -0.27 -4.78 16 24 C -0.14 -3.35 9.37 -26.69 -0.25 -3.60 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.38 7.07 -51.93 -0.37 1.01 16 27 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 28 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 29 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.40 2.38 8.84 -40.82 -0.36 2.02 16 31 H 0.40 2.91 6.83 -40.82 -0.28 2.63 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.67 6.56 -51.93 -0.34 0.33 16 34 H 0.07 1.09 7.08 -51.93 -0.37 0.72 16 35 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 36 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 40 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 41 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -31.24 348.98 -8.72 -39.95 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.91 Total: 6.35 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -3.32 Total: -16.38 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 1.01 Total: -31.26 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.74 Total: -20.00 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.24 -8.72 -39.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873482583.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.498 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds