Wall clock time and date at job start Tue Mar 31 2020 06:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38014 * 120.00328 * 2 1 4 4 C 1.38204 * 120.23402 * 180.02562 * 3 2 1 5 5 C 1.39024 * 120.23383 * 0.25123 * 4 3 2 6 6 N 1.39713 * 120.00438 * 179.72373 * 5 4 3 7 7 C 1.38633 * 119.99611 * 359.45056 * 5 4 3 8 8 C 1.50701 * 120.11819 * 180.27103 * 7 5 4 9 9 C 1.39545 * 119.76355 * 0.56683 * 7 5 4 10 10 C 1.47741 * 120.11132 * 179.68179 * 9 7 5 11 11 O 1.21473 * 120.00068 * 270.02507 * 10 9 7 12 12 O 1.34710 * 120.00058 * 90.02460 * 10 9 7 13 13 C 1.45206 * 117.00148 * 179.97438 * 12 10 9 14 14 C 1.52991 * 109.47112 * 179.97438 * 13 12 10 15 15 C 1.50702 * 115.55205 * 65.10545 * 14 13 12 16 16 H 1.07994 * 120.00274 * 266.11431 * 15 14 13 17 17 C 1.37877 * 120.00022 * 86.11141 * 15 14 13 18 18 N 1.31518 * 119.99736 * 353.70475 * 17 15 14 19 19 Si 1.86797 * 120.00122 * 173.70993 * 17 15 14 20 20 H 1.48500 * 109.47199 * 60.00047 * 19 17 15 21 21 H 1.48502 * 109.47006 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47033 * 299.99562 * 19 17 15 23 23 C 1.52999 * 117.50236 * 279.43673 * 14 13 12 24 24 C 1.53002 * 117.49927 * 210.77519 * 14 13 12 25 25 H 1.08995 * 109.47434 * 89.99819 * 1 2 3 26 26 H 1.09004 * 109.46984 * 210.00524 * 1 2 3 27 27 H 1.09002 * 109.47126 * 329.99551 * 1 2 3 28 28 H 1.08005 * 119.87570 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.88393 * 179.97438 * 4 3 2 30 30 H 0.96998 * 119.99806 * 359.97438 * 6 5 4 31 31 H 0.97003 * 120.00009 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.47081 * 270.30207 * 8 7 5 33 33 H 1.09002 * 109.46803 * 30.29713 * 8 7 5 34 34 H 1.08998 * 109.46832 * 150.29477 * 8 7 5 35 35 H 1.08997 * 109.46949 * 300.00057 * 13 12 10 36 36 H 1.09005 * 109.46949 * 59.99629 * 13 12 10 37 37 H 0.97003 * 119.99926 * 179.97438 * 18 17 15 38 38 H 1.09003 * 117.49620 * 359.97438 * 23 14 13 39 39 H 1.08993 * 117.50306 * 145.02110 * 23 14 13 40 40 H 1.09001 * 117.49741 * 214.97738 * 24 14 13 41 41 H 1.08997 * 117.50002 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1952 0.0000 4 6 3.5791 1.2008 -0.0005 5 6 4.2840 0.0025 -0.0063 6 7 5.6811 0.0137 -0.0127 7 6 3.6006 -1.2037 -0.0001 8 6 4.3619 -2.5042 -0.0002 9 6 2.2051 -1.2092 0.0000 10 6 1.4690 -2.4902 -0.0005 11 8 1.1667 -3.0165 -1.0526 12 8 1.1330 -3.0744 1.1659 13 6 0.4101 -4.3313 1.0895 14 6 0.1189 -4.8390 2.5030 15 6 -0.8101 -3.9814 3.3232 16 1 -0.4071 -3.2327 3.9890 17 6 -2.1745 -4.1527 3.2235 18 7 -2.6700 -4.9754 2.3249 19 14 -3.3193 -3.2162 4.3644 20 1 -3.1259 -1.7567 4.1710 21 1 -4.7272 -3.5737 4.0556 22 1 -3.0150 -3.5735 5.7733 23 6 1.2475 -5.5627 3.2402 24 6 0.0491 -6.3534 2.7094 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6551 2.1294 0.0004 29 1 4.1135 2.1393 -0.0009 30 1 6.1593 0.8576 -0.0134 31 1 6.1728 -0.8224 -0.0171 32 1 4.5454 -2.8177 -1.0279 33 1 5.3135 -2.3681 0.5136 34 1 3.7774 -3.2674 0.5137 35 1 -0.5288 -4.1786 0.5573 36 1 1.0141 -5.0661 0.5571 37 1 -3.6300 -5.0962 2.2549 38 1 2.1973 -5.6775 2.7179 39 1 1.3178 -5.4189 4.3184 40 1 -0.6685 -6.7294 3.4387 41 1 0.2102 -6.9880 1.8380 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873482583.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:17 Heat of formation + Delta-G solvation = -62.988451 kcal Electronic energy + Delta-G solvation = -23152.430364 eV Core-core repulsion = 19803.854498 eV Total energy + Delta-G solvation = -3348.575866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77183 -40.22787 -38.56285 -36.95350 -36.16403 -34.03427 -33.71474 -31.76200 -29.32043 -28.31741 -27.31281 -26.67150 -24.76905 -23.00637 -21.76879 -21.43001 -21.21876 -18.95950 -18.56020 -18.36328 -17.65498 -17.08773 -16.58044 -16.39282 -15.86152 -15.60856 -15.26634 -15.15856 -14.82206 -14.30797 -14.20881 -13.95526 -13.86754 -13.62846 -13.56416 -13.05995 -13.01418 -12.95018 -12.81837 -12.53050 -12.41347 -12.20323 -12.11708 -11.74649 -11.73345 -11.39887 -11.26566 -10.80893 -10.50278 -10.11295 -9.79494 -8.34699 -8.14531 -6.25951 0.10435 0.53009 1.04608 1.41753 1.42722 1.50616 1.78082 2.41949 2.72907 3.01601 3.13952 3.38311 3.69384 3.81368 3.90974 4.02197 4.09101 4.32948 4.33846 4.41242 4.45117 4.59603 4.61982 4.63756 4.66265 4.69946 4.77916 4.80591 4.93889 5.07466 5.15252 5.17873 5.24754 5.34915 5.39739 5.52523 5.57941 5.63289 5.73357 5.84907 6.34038 6.55471 6.69335 6.78482 7.03919 7.42644 8.94288 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017939 B = 0.004924 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.470393 B = 5685.089588 C = 6453.695729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.120 4.120 3 C -0.071 4.071 4 C -0.166 4.166 5 C 0.214 3.786 6 N -0.861 5.861 7 C -0.141 4.141 8 C -0.111 4.111 9 C -0.085 4.085 10 C 0.512 3.488 11 O -0.543 6.543 12 O -0.339 6.339 13 C 0.126 3.874 14 C 0.003 3.997 15 C -0.505 4.505 16 H 0.052 0.948 17 C 0.025 3.975 18 N -0.909 5.909 19 Si 0.951 3.049 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.267 1.267 23 C -0.178 4.178 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.029 0.971 27 H 0.097 0.903 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.413 0.587 31 H 0.405 0.595 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.039 0.961 36 H 0.048 0.952 37 H 0.262 0.738 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.769 12.424 -4.162 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.189 4.189 5 C 0.108 3.892 6 N -0.403 5.403 7 C -0.146 4.146 8 C -0.168 4.168 9 C -0.087 4.087 10 C 0.357 3.643 11 O -0.435 6.435 12 O -0.255 6.255 13 C 0.053 3.947 14 C 0.002 3.998 15 C -0.543 4.543 16 H 0.070 0.930 17 C -0.175 4.175 18 N -0.546 5.546 19 Si 0.776 3.224 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.192 1.192 23 C -0.215 4.215 24 C -0.179 4.179 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.116 0.884 28 H 0.178 0.822 29 H 0.181 0.819 30 H 0.244 0.756 31 H 0.235 0.765 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.468 12.142 -4.505 20.174 hybrid contribution -1.001 -0.346 0.233 1.084 sum 14.467 11.796 -4.272 19.150 Atomic orbital electron populations 1.20789 0.91369 1.02769 1.02311 1.19797 0.96088 0.91978 1.04390 1.20981 0.94091 0.96781 0.97117 1.21098 0.93983 0.97266 1.06527 1.17394 0.85676 0.91993 0.94119 1.42417 1.01406 1.12216 1.84250 1.19368 0.90782 0.96154 1.08310 1.20705 1.00491 0.92969 1.02645 1.18821 0.93502 0.89457 1.06887 1.21932 0.75404 0.85163 0.81811 1.90765 1.53466 1.65242 1.33987 1.86716 1.67194 1.38240 1.33302 1.22595 0.92691 0.80499 0.98956 1.18871 0.97623 0.92330 0.90970 1.20556 0.90610 1.19190 1.23897 0.92965 1.25708 0.99451 0.95989 0.96387 1.70103 1.12804 1.37648 1.34052 0.85725 0.77738 0.79154 0.79781 1.19811 1.20813 1.19217 1.23019 0.92519 1.05946 1.00024 1.22468 0.99768 0.94100 1.01606 0.90998 0.95205 0.88429 0.82200 0.81882 0.75610 0.76451 0.90687 0.88388 0.93925 0.94205 0.93345 0.92937 0.89185 0.89518 0.90961 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 9.61 71.23 0.68 -3.04 16 2 C -0.12 -3.78 5.92 -19.58 -0.12 -3.89 16 3 C -0.07 -1.59 9.68 22.21 0.21 -1.38 16 4 C -0.17 -3.11 9.89 22.45 0.22 -2.88 16 5 C 0.21 4.55 6.73 38.17 0.26 4.81 16 6 N -0.86 -10.93 8.99 -51.45 -0.46 -11.39 16 7 C -0.14 -4.08 5.93 -19.45 -0.12 -4.20 16 8 C -0.11 -2.86 9.17 71.24 0.65 -2.21 16 9 C -0.09 -3.07 5.75 -20.11 -0.12 -3.18 16 10 C 0.51 22.67 4.31 70.33 0.30 22.97 16 11 O -0.54 -26.49 16.90 19.92 0.34 -26.15 16 12 O -0.34 -16.47 10.17 -56.19 -0.57 -17.04 16 13 C 0.13 6.43 5.29 71.98 0.38 6.81 16 14 C 0.00 0.13 1.62 -52.93 -0.09 0.04 16 15 C -0.50 -28.48 8.77 25.60 0.22 -28.26 16 16 H 0.05 2.97 7.82 -2.91 -0.02 2.94 16 17 C 0.03 1.40 5.38 84.65 0.46 1.86 16 18 N -0.91 -52.85 12.88 21.45 0.28 -52.57 16 19 Si 0.95 44.02 29.54 68.60 2.03 46.04 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C -0.18 -7.75 9.96 30.62 0.30 -7.44 16 24 C -0.14 -6.70 9.37 30.62 0.29 -6.41 16 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.03 1.19 7.07 -2.38 -0.02 1.17 16 27 H 0.10 2.49 8.09 -2.39 -0.02 2.47 16 28 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.41 2.89 8.84 -92.71 -0.82 2.07 16 31 H 0.40 4.33 6.83 -92.71 -0.63 3.69 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 1.77 6.56 -2.39 -0.02 1.76 16 34 H 0.04 1.33 7.08 -2.39 -0.02 1.31 16 35 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 2.30 8.09 -2.38 -0.02 2.28 16 37 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 38 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 39 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 40 H 0.07 3.61 8.14 -2.39 -0.02 3.59 16 41 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -71.36 348.98 4.77 -66.60 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -0.40 Total: 20.92 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 3.56 Total: -26.40 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -0.19 Total: -63.97 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.23 Total: -43.20 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.36 4.77 -66.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873482583.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.609 kcal (2) G-P(sol) polarization free energy of solvation -71.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds