Wall clock time and date at job start Tue Mar 31 2020 06:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38286 * 119.92900 * 2 1 4 4 C 1.38113 * 120.07291 * 179.97438 * 3 2 1 5 5 C 1.38879 * 119.92676 * 0.02562 * 4 3 2 6 6 N 1.39919 * 120.06726 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00056 * 57.08935 * 6 5 4 8 8 C 1.50704 * 109.46979 * 89.99716 * 7 6 5 9 9 H 1.07995 * 120.00176 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99420 * 180.02562 * 8 7 6 11 11 N 1.31506 * 120.00627 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99733 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47444 * 89.99638 * 12 10 8 14 14 H 1.48492 * 109.47376 * 210.00149 * 12 10 8 15 15 H 1.48505 * 109.47242 * 329.99893 * 12 10 8 16 16 C 1.34781 * 120.00137 * 237.36036 * 6 5 4 17 17 O 1.21285 * 119.99877 * 5.70897 * 16 6 5 18 18 C 1.50693 * 120.00128 * 185.71061 * 16 6 5 19 19 H 1.09007 * 112.84879 * 309.66451 * 18 16 6 20 20 C 1.53777 * 113.61790 * 80.86202 * 18 16 6 21 21 C 1.53955 * 87.02293 * 139.95197 * 20 18 16 22 22 H 1.09003 * 113.61547 * 89.19722 * 21 20 18 23 23 O 1.42896 * 113.66877 * 220.07043 * 21 20 18 24 24 C 1.53783 * 113.61641 * 178.47333 * 18 16 6 25 25 C 1.38868 * 119.85680 * 0.25197 * 5 4 3 26 26 C 1.38110 * 119.93418 * 359.47228 * 25 5 4 27 27 H 1.09004 * 109.47376 * 90.00051 * 1 2 3 28 28 H 1.09005 * 109.46691 * 209.99752 * 1 2 3 29 29 H 1.09002 * 109.47136 * 329.99446 * 1 2 3 30 30 H 1.07995 * 119.96228 * 359.97438 * 3 2 1 31 31 H 1.07995 * 120.03918 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.47129 * 209.99696 * 7 6 5 33 33 H 1.08999 * 109.46883 * 329.99659 * 7 6 5 34 34 H 0.96999 * 120.00533 * 179.97438 * 11 10 8 35 35 H 1.08997 * 113.61741 * 254.52895 * 20 18 16 36 36 H 1.08997 * 113.61104 * 25.43263 * 20 18 16 37 37 H 0.96700 * 114.00129 * 277.55936 * 23 21 20 38 38 H 1.09003 * 113.61056 * 334.56468 * 24 18 16 39 39 H 1.09004 * 113.61595 * 105.46592 * 24 18 16 40 40 H 1.08007 * 120.03594 * 179.74577 * 25 5 4 41 41 H 1.07997 * 119.97185 * 180.27192 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2739 0.0000 0.0005 6 7 5.6731 0.0001 0.0005 7 6 6.4056 0.6895 1.0656 8 6 6.6567 -0.2669 2.2029 9 1 6.3055 -1.2862 2.1388 10 6 7.3341 0.1597 3.3255 11 7 7.7613 1.4009 3.4037 12 14 7.6460 -1.0260 4.7349 13 1 8.9415 -1.7196 4.5208 14 1 7.6931 -0.2732 6.0140 15 1 6.5514 -2.0280 4.7904 16 6 6.3471 -0.6294 -0.9824 17 8 5.7452 -1.1065 -1.9210 18 6 7.8484 -0.7404 -0.9150 19 1 8.3353 0.2157 -0.7223 20 6 8.3419 -1.8775 -0.0051 21 6 9.4195 -2.1535 -1.0694 22 1 10.3374 -1.5853 -0.9191 23 8 9.6585 -3.5439 -1.2967 24 6 8.4620 -1.5180 -2.0914 25 6 3.5781 -1.2017 -0.0053 26 6 2.1970 -1.1984 -0.0001 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6552 2.1327 -0.0004 31 1 4.1163 2.1382 0.0010 32 1 7.3580 1.0501 0.6771 33 1 5.8165 1.5336 1.4241 34 1 8.2375 1.7011 4.1937 35 1 8.7454 -1.5315 0.9465 36 1 7.6229 -2.6888 0.1089 37 1 10.2599 -3.9493 -0.6571 38 1 7.7759 -2.2307 -2.5489 39 1 8.9623 -0.8819 -2.8217 40 1 4.1163 -2.1381 -0.0095 41 1 1.6552 -2.1327 -0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874246275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:41 Heat of formation + Delta-G solvation = -60.478969 kcal Electronic energy + Delta-G solvation = -23334.273733 eV Core-core repulsion = 19985.806686 eV Total energy + Delta-G solvation = -3348.467047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.80684 -40.21902 -38.85592 -36.90365 -35.76040 -34.69809 -32.75692 -31.90327 -29.33480 -28.07985 -26.65801 -26.15519 -25.02368 -23.48734 -22.70964 -21.12585 -19.97172 -18.79468 -18.59941 -18.21587 -17.47217 -16.69308 -16.44915 -16.36040 -16.16098 -15.39735 -15.32485 -14.77970 -14.52908 -14.42328 -14.33718 -14.18370 -13.65993 -13.43188 -13.27428 -13.11710 -12.95006 -12.84054 -12.72693 -12.52049 -12.32161 -12.14902 -12.04055 -11.95054 -11.74901 -11.48138 -10.96581 -10.62152 -10.54388 -10.20149 -9.87131 -8.98329 -8.20437 -6.33258 0.34474 0.47177 1.38344 1.41857 1.50024 1.62741 2.14900 2.40701 2.82018 3.09629 3.30617 3.50474 3.71473 3.83635 3.92255 3.96962 4.04421 4.07882 4.11076 4.47249 4.49198 4.51578 4.57148 4.75828 4.82862 4.86598 4.90804 4.93617 5.07089 5.08532 5.14575 5.16966 5.20588 5.34959 5.40281 5.53022 5.67240 5.68766 5.80753 6.02770 6.16251 6.45764 6.75701 6.92991 7.22202 7.37512 8.84990 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.006661 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.082426 B = 4202.724149 C = 5868.511122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.103 4.103 3 C -0.107 4.107 4 C -0.143 4.143 5 C 0.131 3.869 6 N -0.557 5.557 7 C 0.255 3.745 8 C -0.530 4.530 9 H 0.047 0.953 10 C 0.029 3.971 11 N -0.918 5.918 12 Si 0.948 3.052 13 H -0.265 1.265 14 H -0.282 1.282 15 H -0.279 1.279 16 C 0.524 3.476 17 O -0.582 6.582 18 C -0.126 4.126 19 H 0.123 0.877 20 C -0.133 4.133 21 C 0.092 3.908 22 H 0.114 0.886 23 O -0.575 6.575 24 C -0.105 4.105 25 C -0.132 4.132 26 C -0.112 4.112 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.153 0.847 31 H 0.121 0.879 32 H 0.039 0.961 33 H 0.019 0.981 34 H 0.268 0.732 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.395 0.605 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 -2.460 -5.149 6.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.103 4.103 3 C -0.125 4.125 4 C -0.162 4.162 5 C 0.040 3.960 6 N -0.283 5.283 7 C 0.135 3.865 8 C -0.568 4.568 9 H 0.066 0.934 10 C -0.172 4.172 11 N -0.557 5.557 12 Si 0.774 3.226 13 H -0.190 1.190 14 H -0.208 1.208 15 H -0.204 1.204 16 C 0.315 3.685 17 O -0.463 6.463 18 C -0.147 4.147 19 H 0.141 0.859 20 C -0.172 4.172 21 C 0.033 3.967 22 H 0.132 0.868 23 O -0.383 6.383 24 C -0.143 4.143 25 C -0.151 4.151 26 C -0.130 4.130 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.171 0.829 31 H 0.139 0.861 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.245 0.755 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.448 -2.461 -5.993 7.858 hybrid contribution 0.770 -0.421 1.579 1.807 sum -3.678 -2.882 -4.413 6.427 Atomic orbital electron populations 1.20785 0.88152 1.03864 1.03230 1.20290 0.98074 0.92203 0.99759 1.21177 0.92381 0.99197 0.99727 1.21270 0.95661 0.96529 1.02768 1.18023 0.83386 0.94386 1.00203 1.45957 1.03991 1.52515 1.25804 1.19242 0.91350 0.91895 0.83966 1.21421 1.36404 0.97171 1.01824 0.93430 1.25494 0.95141 0.96473 1.00057 1.69986 1.38644 1.16835 1.30253 0.85703 0.78870 0.79078 0.78980 1.19023 1.20800 1.20366 1.20916 0.90954 0.76138 0.80493 1.90587 1.71401 1.49691 1.34617 1.22424 0.90312 1.01316 1.00638 0.85925 1.23418 0.98879 0.96026 0.98850 1.23354 0.96388 0.82524 0.94411 0.86801 1.86463 1.70873 1.23196 1.57739 1.22924 0.97344 0.98131 0.95882 1.21117 0.95599 0.96333 1.02100 1.21130 0.92306 0.99310 1.00271 0.90078 0.90603 0.90197 0.82919 0.86123 0.94298 0.96258 0.92268 0.90096 0.91863 0.75461 0.90648 0.88467 0.88420 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.94 10.01 71.24 0.71 -1.23 16 2 C -0.10 -2.91 5.88 -19.84 -0.12 -3.03 16 3 C -0.11 -3.23 9.69 22.25 0.22 -3.01 16 4 C -0.14 -5.40 9.32 22.39 0.21 -5.19 16 5 C 0.13 5.70 5.15 38.15 0.20 5.89 16 6 N -0.56 -25.29 2.56 -635.31 -1.63 -26.91 16 7 C 0.25 12.33 4.84 85.63 0.41 12.74 16 8 C -0.53 -27.21 7.98 25.60 0.20 -27.00 16 9 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 10 C 0.03 1.48 5.46 84.66 0.46 1.94 16 11 N -0.92 -49.21 13.29 21.45 0.28 -48.93 16 12 Si 0.95 41.07 29.54 68.60 2.03 43.10 16 13 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 16 C 0.52 23.13 6.98 87.65 0.61 23.74 16 17 O -0.58 -28.06 15.30 -3.04 -0.05 -28.11 16 18 C -0.13 -4.64 3.03 -11.02 -0.03 -4.67 16 19 H 0.12 4.29 6.88 -2.38 -0.02 4.28 16 20 C -0.13 -4.72 6.61 31.18 0.21 -4.52 16 21 C 0.09 2.58 5.21 31.18 0.16 2.74 16 22 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 23 O -0.57 -15.59 13.67 -148.98 -2.04 -17.63 16 24 C -0.11 -3.34 7.23 31.12 0.22 -3.12 16 25 C -0.13 -5.37 8.97 22.39 0.20 -5.17 16 26 C -0.11 -3.62 9.69 22.25 0.22 -3.41 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 1.25 8.08 -2.38 -0.02 1.23 16 29 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 30 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.12 4.45 7.84 -2.91 -0.02 4.42 16 32 H 0.04 1.89 6.31 -2.39 -0.02 1.87 16 33 H 0.02 1.00 7.37 -2.39 -0.02 0.99 16 34 H 0.27 13.65 8.31 -92.71 -0.77 12.87 16 35 H 0.08 3.03 7.62 -2.39 -0.02 3.01 16 36 H 0.06 2.48 8.09 -2.39 -0.02 2.47 16 37 H 0.40 6.90 9.12 -74.06 -0.68 6.23 16 38 H 0.07 2.78 7.45 -2.39 -0.02 2.76 16 39 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 40 H 0.10 4.23 8.06 -2.91 -0.02 4.20 16 41 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -65.99 343.32 2.85 -63.15 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.36 Total: 28.61 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 3.89 Total: -13.28 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -1.34 Total: -75.84 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -2.08 Total: -45.74 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -65.99 2.85 -63.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874246275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.670 kcal (2) G-P(sol) polarization free energy of solvation -65.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds