Wall clock time and date at job start Tue Mar 31 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21297 * 120.00197 * 2 1 4 4 C 1.46842 * 119.99910 * 179.97438 * 2 1 3 5 5 C 1.40057 * 120.09977 * 91.33795 * 4 2 1 6 6 C 1.50700 * 120.05039 * 359.94962 * 5 4 2 7 7 C 1.37087 * 119.89984 * 179.97438 * 5 4 2 8 8 C 1.39219 * 120.10106 * 359.97438 * 7 5 4 9 9 N 1.39309 * 119.90057 * 180.02562 * 8 7 5 10 10 C 1.34772 * 120.00236 * 146.74299 * 9 8 7 11 11 O 1.21284 * 119.99865 * 354.84454 * 10 9 8 12 12 C 1.50698 * 120.00254 * 174.57429 * 10 9 8 13 13 C 1.53002 * 109.47154 * 180.27473 * 12 10 9 14 14 C 1.50697 * 109.46944 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00079 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00004 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99880 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00066 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47029 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46896 * 120.00563 * 18 16 14 21 21 H 1.48498 * 109.47129 * 240.00253 * 18 16 14 22 22 C 1.39222 * 120.19740 * 0.27523 * 8 7 5 23 23 C 1.37083 * 120.10251 * 359.45060 * 22 8 7 24 24 C 1.50704 * 120.05037 * 180.26855 * 23 22 8 25 25 H 1.08997 * 109.47358 * 275.16359 * 1 2 3 26 26 H 1.09002 * 109.47035 * 35.16244 * 1 2 3 27 27 H 1.09000 * 109.46893 * 155.15813 * 1 2 3 28 28 H 1.09000 * 109.47027 * 276.04611 * 6 5 4 29 29 H 1.09002 * 109.46633 * 36.04477 * 6 5 4 30 30 H 1.08997 * 109.47294 * 156.04229 * 6 5 4 31 31 H 1.08001 * 119.95239 * 180.02562 * 7 5 4 32 32 H 0.97003 * 119.99578 * 326.74172 * 9 8 7 33 33 H 1.09000 * 109.46781 * 300.27028 * 12 10 9 34 34 H 1.08997 * 109.47104 * 60.27168 * 12 10 9 35 35 H 1.09000 * 109.46914 * 299.99474 * 13 12 10 36 36 H 1.08997 * 109.47364 * 59.99854 * 13 12 10 37 37 H 0.97006 * 120.00318 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.94157 * 179.70038 * 22 8 7 39 39 H 1.08991 * 109.46994 * 268.61960 * 24 23 22 40 40 H 1.09003 * 109.47011 * 28.62122 * 24 23 22 41 41 H 1.08999 * 109.46850 * 148.61679 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2412 -1.2717 0.0006 5 6 2.6169 -1.8664 -1.2105 6 6 2.2673 -1.2027 -2.5176 7 6 3.3027 -3.0534 -1.2052 8 6 3.6262 -3.6674 0.0016 9 7 4.3237 -4.8734 0.0022 10 6 5.1956 -5.1471 0.9927 11 8 5.4433 -4.3072 1.8319 12 6 5.8583 -6.4989 1.0611 13 6 6.7888 -6.5499 2.2745 14 6 7.4509 -7.9019 2.3433 15 1 7.2304 -8.6498 1.5959 16 6 8.3389 -8.1837 3.3596 17 7 8.6078 -7.2729 4.2693 18 14 9.1603 -9.8594 3.4444 19 1 8.6925 -10.6978 2.3115 20 1 10.6337 -9.6932 3.3614 21 1 8.8081 -10.5190 4.7273 22 6 3.2503 -3.0826 1.2078 23 6 2.5692 -1.8929 1.2122 24 6 2.1681 -1.2578 2.5187 25 1 -0.3634 0.0925 1.0235 26 1 -0.3633 0.8402 -0.5918 27 1 -0.3633 -0.9326 -0.4317 28 1 1.2505 -1.4735 -2.8021 29 1 2.3374 -0.1207 -2.4057 30 1 2.9612 -1.5337 -3.2902 31 1 3.5932 -3.5125 -2.1386 32 1 4.1817 -5.5160 -0.7104 33 1 5.0963 -7.2726 1.1547 34 1 6.4365 -6.6664 0.1525 35 1 7.5507 -5.7761 2.1809 36 1 6.2105 -6.3824 3.1832 37 1 9.2323 -7.4712 4.9846 38 1 3.4992 -3.5649 2.1415 39 1 1.1698 -1.5960 2.7957 40 1 2.8775 -1.5447 3.2951 41 1 2.1673 -0.1732 2.4103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882178185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:39 Heat of formation + Delta-G solvation = -69.345756 kcal Electronic energy + Delta-G solvation = -22088.117520 eV Core-core repulsion = 18739.265981 eV Total energy + Delta-G solvation = -3348.851540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.76142 -39.65805 -38.07692 -34.93067 -33.84562 -33.53977 -31.63473 -30.84213 -29.63498 -27.66980 -26.94933 -25.93582 -23.37775 -21.59727 -21.12678 -19.96446 -19.60824 -17.30545 -16.84507 -16.70671 -16.25221 -15.64716 -15.44525 -15.00581 -14.48075 -14.26598 -14.06271 -13.92432 -13.59740 -13.44414 -13.22794 -13.13701 -12.68205 -12.62887 -12.37582 -12.28144 -12.16709 -12.02714 -11.82827 -11.29224 -11.18745 -10.99080 -10.63125 -10.10193 -10.04856 -9.97146 -9.75216 -9.31046 -9.12330 -8.72091 -8.38269 -8.01870 -6.01401 -4.06289 1.01300 1.30300 1.66580 2.93325 3.24532 3.29465 3.37138 3.40040 3.62171 3.88843 4.42992 4.53499 4.59682 4.81309 4.98218 5.05398 5.13522 5.18284 5.20551 5.31417 5.33914 5.36113 5.43450 5.47957 5.56669 5.61804 5.64467 5.87204 5.98980 6.08343 6.10004 6.19288 6.31475 6.38929 6.52388 6.76692 6.99557 7.22083 7.58009 7.67940 7.76742 7.99625 8.29788 8.50564 9.01735 9.57830 11.09503 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035127 B = 0.002855 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.922632 B = 9806.111473 C =10312.009012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.414 3.586 3 O -0.453 6.453 4 C -0.188 4.188 5 C -0.032 4.032 6 C -0.120 4.120 7 C -0.161 4.161 8 C 0.185 3.815 9 N -0.685 5.685 10 C 0.508 3.492 11 O -0.508 6.508 12 C -0.129 4.129 13 C 0.036 3.964 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.131 4.131 23 C -0.028 4.028 24 C -0.123 4.123 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.410 0.590 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.142 0.858 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.645 10.115 -12.457 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.290 3.710 3 O -0.326 6.326 4 C -0.190 4.190 5 C -0.033 4.033 6 C -0.177 4.177 7 C -0.182 4.182 8 C 0.089 3.911 9 N -0.331 5.331 10 C 0.298 3.702 11 O -0.381 6.381 12 C -0.169 4.169 13 C -0.002 4.002 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.151 4.151 23 C -0.029 4.029 24 C -0.180 4.180 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.147 0.853 32 H 0.246 0.754 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.160 0.840 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.967 11.235 -11.635 24.174 hybrid contribution 0.496 -1.408 -0.283 1.519 sum -17.471 9.827 -11.918 23.320 Atomic orbital electron populations 1.22290 0.93721 1.04780 1.04868 1.22415 0.91655 0.87693 0.69248 1.90581 1.72449 1.34358 1.35201 1.20037 1.06646 0.98621 0.93719 1.19370 0.96307 0.93919 0.93670 1.20871 1.02264 1.00548 0.94013 1.20529 1.04521 0.96370 0.96796 1.17946 0.92057 0.87411 0.93706 1.43901 1.42273 1.17914 1.28991 1.21906 0.77382 0.91346 0.79557 1.90701 1.60563 1.48489 1.38315 1.21924 1.00272 0.90292 1.04363 1.18928 0.93427 0.97193 0.90610 1.21222 1.25393 0.98903 1.11139 0.92482 1.25028 0.96691 0.97005 0.95652 1.70002 1.34937 1.33585 1.14182 0.86524 0.79294 0.84147 0.77931 1.19732 1.20984 1.20976 1.20911 0.99320 0.96545 0.98339 1.19538 0.95761 0.93884 0.93710 1.20908 1.02382 1.00287 0.94389 0.88399 0.89430 0.89556 0.90661 0.91457 0.90834 0.85293 0.75398 0.89658 0.89807 0.95698 0.95708 0.92928 0.83983 0.90548 0.90269 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 10.26 36.01 0.37 -0.98 16 2 C 0.41 4.57 3.74 -30.83 -0.12 4.45 16 3 O -0.45 -6.52 17.85 5.54 0.10 -6.42 16 4 C -0.19 -2.30 5.51 -105.05 -0.58 -2.88 16 5 C -0.03 -0.36 5.90 -104.36 -0.62 -0.97 16 6 C -0.12 -1.00 9.52 36.01 0.34 -0.66 16 7 C -0.16 -1.87 9.54 -39.63 -0.38 -2.25 16 8 C 0.18 2.60 6.28 -83.73 -0.53 2.07 16 9 N -0.69 -9.42 5.31 -9.85 -0.05 -9.47 16 10 C 0.51 9.30 7.56 -10.99 -0.08 9.21 16 11 O -0.51 -11.40 13.65 5.55 0.08 -11.33 16 12 C -0.13 -2.45 5.64 -27.88 -0.16 -2.61 16 13 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 14 C -0.53 -14.63 9.11 -34.44 -0.31 -14.94 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.13 -1.98 8.24 -39.64 -0.33 -2.30 16 23 C -0.03 -0.37 5.90 -104.36 -0.62 -0.99 16 24 C -0.12 -1.36 9.59 36.01 0.35 -1.01 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.61 7.31 -51.93 -0.38 0.23 16 30 H 0.07 0.53 8.04 -51.93 -0.42 0.11 16 31 H 0.13 1.17 8.05 -52.49 -0.42 0.74 16 32 H 0.41 4.07 8.81 -40.82 -0.36 3.71 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.14 2.42 6.40 -52.49 -0.34 2.08 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.06 0.71 7.15 -51.93 -0.37 0.34 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -35.08 350.48 -7.79 -42.87 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.04 Total: 0.50 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.87 Total: -11.47 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.68 Total: -35.76 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.17 Total: -17.75 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.08 -7.79 -42.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882178185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.473 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds