Wall clock time and date at job start Tue Mar 31 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21297 * 120.00197 * 2 1 4 4 C 1.46842 * 119.99910 * 179.97438 * 2 1 3 5 5 C 1.40057 * 120.09977 * 91.33795 * 4 2 1 6 6 C 1.50700 * 120.05039 * 359.94962 * 5 4 2 7 7 C 1.37087 * 119.89984 * 179.97438 * 5 4 2 8 8 C 1.39219 * 120.10106 * 359.97438 * 7 5 4 9 9 N 1.39309 * 119.90057 * 180.02562 * 8 7 5 10 10 C 1.34772 * 120.00236 * 146.74299 * 9 8 7 11 11 O 1.21284 * 119.99865 * 354.84454 * 10 9 8 12 12 C 1.50698 * 120.00254 * 174.57429 * 10 9 8 13 13 C 1.53002 * 109.47154 * 180.27473 * 12 10 9 14 14 C 1.50697 * 109.46944 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00079 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00004 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99880 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00066 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47029 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46896 * 120.00563 * 18 16 14 21 21 H 1.48498 * 109.47129 * 240.00253 * 18 16 14 22 22 C 1.39222 * 120.19740 * 0.27523 * 8 7 5 23 23 C 1.37083 * 120.10251 * 359.45060 * 22 8 7 24 24 C 1.50704 * 120.05037 * 180.26855 * 23 22 8 25 25 H 1.08997 * 109.47358 * 275.16359 * 1 2 3 26 26 H 1.09002 * 109.47035 * 35.16244 * 1 2 3 27 27 H 1.09000 * 109.46893 * 155.15813 * 1 2 3 28 28 H 1.09000 * 109.47027 * 276.04611 * 6 5 4 29 29 H 1.09002 * 109.46633 * 36.04477 * 6 5 4 30 30 H 1.08997 * 109.47294 * 156.04229 * 6 5 4 31 31 H 1.08001 * 119.95239 * 180.02562 * 7 5 4 32 32 H 0.97003 * 119.99578 * 326.74172 * 9 8 7 33 33 H 1.09000 * 109.46781 * 300.27028 * 12 10 9 34 34 H 1.08997 * 109.47104 * 60.27168 * 12 10 9 35 35 H 1.09000 * 109.46914 * 299.99474 * 13 12 10 36 36 H 1.08997 * 109.47364 * 59.99854 * 13 12 10 37 37 H 0.97006 * 120.00318 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.94157 * 179.70038 * 22 8 7 39 39 H 1.08991 * 109.46994 * 268.61960 * 24 23 22 40 40 H 1.09003 * 109.47011 * 28.62122 * 24 23 22 41 41 H 1.08999 * 109.46850 * 148.61679 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2412 -1.2717 0.0006 5 6 2.6169 -1.8664 -1.2105 6 6 2.2673 -1.2027 -2.5176 7 6 3.3027 -3.0534 -1.2052 8 6 3.6262 -3.6674 0.0016 9 7 4.3237 -4.8734 0.0022 10 6 5.1956 -5.1471 0.9927 11 8 5.4433 -4.3072 1.8319 12 6 5.8583 -6.4989 1.0611 13 6 6.7888 -6.5499 2.2745 14 6 7.4509 -7.9019 2.3433 15 1 7.2304 -8.6498 1.5959 16 6 8.3389 -8.1837 3.3596 17 7 8.6078 -7.2729 4.2693 18 14 9.1603 -9.8594 3.4444 19 1 8.6925 -10.6978 2.3115 20 1 10.6337 -9.6932 3.3614 21 1 8.8081 -10.5190 4.7273 22 6 3.2503 -3.0826 1.2078 23 6 2.5692 -1.8929 1.2122 24 6 2.1681 -1.2578 2.5187 25 1 -0.3634 0.0925 1.0235 26 1 -0.3633 0.8402 -0.5918 27 1 -0.3633 -0.9326 -0.4317 28 1 1.2505 -1.4735 -2.8021 29 1 2.3374 -0.1207 -2.4057 30 1 2.9612 -1.5337 -3.2902 31 1 3.5932 -3.5125 -2.1386 32 1 4.1817 -5.5160 -0.7104 33 1 5.0963 -7.2726 1.1547 34 1 6.4365 -6.6664 0.1525 35 1 7.5507 -5.7761 2.1809 36 1 6.2105 -6.3824 3.1832 37 1 9.2323 -7.4712 4.9846 38 1 3.4992 -3.5649 2.1415 39 1 1.1698 -1.5960 2.7957 40 1 2.8775 -1.5447 3.2951 41 1 2.1673 -0.1732 2.4103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882178185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:37 Heat of formation + Delta-G solvation = -91.839937 kcal Electronic energy + Delta-G solvation = -22089.092941 eV Core-core repulsion = 18739.265981 eV Total energy + Delta-G solvation = -3349.826961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.85914 -40.82731 -39.18685 -36.19641 -35.58895 -34.71723 -33.24353 -32.08367 -30.51750 -28.53486 -27.86952 -27.77450 -24.80010 -23.04848 -22.25384 -21.14341 -20.75202 -18.92138 -18.11323 -17.71361 -17.66601 -17.04839 -16.48927 -16.37208 -16.27080 -15.24384 -15.11406 -14.97446 -14.78919 -14.38834 -14.27331 -14.16307 -14.10819 -13.97930 -13.28887 -13.27003 -13.12359 -13.00370 -12.91654 -12.86767 -12.78775 -12.45191 -12.18205 -11.94841 -11.66582 -11.30958 -11.23666 -10.96739 -10.67460 -10.58550 -9.69121 -9.10642 -8.19269 -6.33148 -0.02317 0.32319 0.81274 1.42327 1.43350 1.55441 1.56604 2.03083 2.42843 2.59795 3.07994 3.14421 3.64033 3.68609 3.89243 4.13411 4.17778 4.24702 4.34711 4.41959 4.47654 4.52139 4.58645 4.63043 4.64953 4.72792 4.76533 4.78021 4.95387 5.01784 5.07474 5.15956 5.26580 5.30639 5.43580 5.46270 5.50559 5.60534 5.83547 5.93412 6.15540 6.39028 6.42362 6.85500 7.16202 7.37418 8.93555 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035127 B = 0.002855 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.922632 B = 9806.111473 C =10312.009012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.419 3.581 3 O -0.494 6.494 4 C -0.196 4.196 5 C -0.033 4.033 6 C -0.118 4.118 7 C -0.151 4.151 8 C 0.162 3.838 9 N -0.661 5.661 10 C 0.511 3.489 11 O -0.562 6.562 12 C -0.116 4.116 13 C 0.040 3.960 14 C -0.541 4.541 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.973 3.027 19 H -0.251 1.251 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.156 4.156 23 C -0.040 4.040 24 C -0.121 4.121 25 H 0.114 0.886 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.431 0.569 33 H 0.113 0.887 34 H 0.112 0.888 35 H -0.018 1.018 36 H -0.016 1.016 37 H 0.262 0.738 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.484 8.919 -15.478 27.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.298 3.702 3 O -0.370 6.370 4 C -0.198 4.198 5 C -0.034 4.034 6 C -0.174 4.174 7 C -0.171 4.171 8 C 0.067 3.933 9 N -0.307 5.307 10 C 0.302 3.698 11 O -0.439 6.439 12 C -0.155 4.155 13 C 0.003 3.997 14 C -0.579 4.579 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.174 1.174 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.177 4.177 23 C -0.040 4.040 24 C -0.177 4.177 25 H 0.132 0.868 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.179 0.821 32 H 0.271 0.729 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.000 1.000 36 H 0.002 0.998 37 H 0.071 0.929 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.861 10.012 -14.725 26.674 hybrid contribution 1.001 -0.951 0.631 1.518 sum -18.860 9.062 -14.094 25.228 Atomic orbital electron populations 1.22326 0.89895 1.06459 1.06328 1.22916 0.93530 0.86312 0.67463 1.90579 1.73627 1.35341 1.37459 1.20395 1.06488 0.99152 0.93729 1.19824 0.95115 0.93690 0.94737 1.20949 1.04343 0.99609 0.92527 1.20823 1.03293 0.96162 0.96841 1.18123 0.93057 0.87757 0.94385 1.43445 1.40698 1.18494 1.28112 1.21678 0.77803 0.90530 0.79834 1.90697 1.62658 1.49852 1.40667 1.21673 1.00043 0.91737 1.02075 1.18711 0.93191 0.95596 0.92224 1.21736 1.25062 0.99668 1.11392 0.90350 1.26138 0.97607 1.01555 0.95228 1.70182 1.36028 1.36402 1.15212 0.85279 0.77789 0.78671 0.78542 1.17435 1.20805 1.20714 1.20816 1.01196 0.97822 0.97862 1.19725 0.95699 0.93514 0.95109 1.20925 1.03436 1.00140 0.93248 0.86778 0.88038 0.87628 0.87874 0.92362 0.89244 0.82054 0.72882 0.86931 0.87032 0.99953 0.99776 0.92897 0.87074 0.87892 0.91792 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 10.26 71.24 0.73 -1.31 16 2 C 0.42 8.63 3.74 27.94 0.10 8.73 16 3 O -0.49 -13.98 17.85 -3.08 -0.06 -14.03 16 4 C -0.20 -4.57 5.51 -20.14 -0.11 -4.68 16 5 C -0.03 -0.66 5.90 -19.69 -0.12 -0.78 16 6 C -0.12 -1.55 9.52 71.24 0.68 -0.87 16 7 C -0.15 -3.14 9.54 22.24 0.21 -2.93 16 8 C 0.16 4.48 6.28 38.43 0.24 4.72 16 9 N -0.66 -17.56 5.31 -303.46 -1.61 -19.17 16 10 C 0.51 19.12 7.56 87.66 0.66 19.78 16 11 O -0.56 -26.99 13.65 -3.04 -0.04 -27.03 16 12 C -0.12 -4.38 5.64 29.85 0.17 -4.21 16 13 C 0.04 2.20 4.26 29.85 0.13 2.32 16 14 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 15 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 16 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 17 N -0.94 -59.24 13.29 21.45 0.28 -58.96 16 18 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 19 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 C -0.16 -4.95 8.24 22.23 0.18 -4.77 16 23 C -0.04 -1.07 5.90 -19.69 -0.12 -1.18 16 24 C -0.12 -2.76 9.59 71.24 0.68 -2.07 16 25 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.10 0.73 8.08 -2.39 -0.02 0.71 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.91 7.31 -2.39 -0.02 0.89 16 30 H 0.09 0.92 8.04 -2.39 -0.02 0.90 16 31 H 0.16 2.24 8.05 -2.91 -0.02 2.22 16 32 H 0.43 7.43 8.81 -92.71 -0.82 6.61 16 33 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 34 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 35 H -0.02 -1.12 8.10 -2.39 -0.02 -1.13 16 36 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 37 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 38 H 0.11 4.17 6.40 -2.91 -0.02 4.15 16 39 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 1.62 8.07 -2.39 -0.02 1.61 16 41 H 0.07 1.47 7.15 -2.39 -0.02 1.45 16 Total: -1.00 -82.17 350.48 4.97 -77.20 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.22 Total: 13.28 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 4.14 Total: -17.14 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -1.33 Total: -78.13 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -0.10 Total: -41.07 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -82.17 4.97 -77.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882178185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.636 kcal (2) G-P(sol) polarization free energy of solvation -82.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds